Amplification of acetylcholine-binding catenanes from dynamic combinatorial libraries

Directed chemical synthesis can produce a vast range of molecular structures, but the intended product must be known at the outset. In contrast, evolution in nature can lead to efficient receptors and catalysts whose structures defy prediction. To access such unpredictable structures, we prepared dynamic combinatorial libraries in which reversibly binding building blocks assemble around a receptor target. We selected for an acetylcholine receptor by adding the neurotransmitter to solutions of dipeptide hydrazones [proline-phenylalanine or proline-(cyclohexyl)alanine], which reversibly combine through hydrazone linkages. At thermodynamic equilibrium, the dominant receptor structure was an elaborate [2]-catenane consisting of two interlocked macrocyclic trimers. This complex receptor with a 100 nM affinity for acetylcholine could be isolated on a preparative scale in 67% yield.     

Nest inheritance is the missing source of direct fitness in a primitively eusocial insect

Animals that cooperate with nonrelatives represent a challenge to inclusive fitness theory, unless cooperative behavior is shown to provide direct fitness benefits. Inheritance of breeding resources could provide such benefits, but this route to cooperation has been little investigated in the social insects. We show that nest inheritance can explain the presence of unrelated helpers in a classic social insect model, the primitively eusocial wasp Polistes dominulus. We found that subordinate helpers produced more direct offspring than lone breeders, some while still subordinate but most after inheriting the dominant position. Thus, while indirect fitness obtained through helping relatives has been the dominant paradigm for understanding eusociality in insects, direct fitness is vital to explain cooperation in P. dominulus.     

Appendage regeneration in adult vertebrates and implications for regenerative medicine

The regeneration of complex structures in adult salamanders depends on mechanisms that offer pointers for regenerative medicine. These include the plasticity of differentiated cells and the retention in regenerative cells of local cues such as positional identity. Limb regeneration proceeds by the local formation of a blastema, a growth zone of mesenchymal stem cells on the stump. The blastema can regenerate autonomously as a self-organizing system over variable linear dimensions. Here we consider the prospects for limb regeneration in mammals from this viewpoint.     

Carbon storage and spatial distribution patterns of paddy soils in China

Carbon storage in agricultural soils plays a key role in terrestrial ecosystem carbon cycles. Paddy soil is one of the major cultivated soil types in China and is of critical significance in studies on soil carbon sequestration. This paper estimated the organic and inorganic carbon density and storage in paddy soils, and analyzed the paddy soil stock spatial distribution patterns in China based on subgroups and regions using the newly compiled 1:1 000 000 digital soil map of China as well as data from 1 490 paddy soil profiles. Results showed that paddy soils in China cover an area of about 45.69 Mhm², accounting for 4.92% of total soil area in China. Soil organic and inorganic carbon densities of paddy soils in China showed a great heterogeneity. Paddy soil organic carbon densities (SOCD) in soil profile ranged from 0.53 to 446.2 kg/m² (0 to 100 cm) while the paddy soil inorganic carbon densities (SICD) ranged from 0.05 to 90.03 kg/m². Soil organic carbon densities of paddy soils in surface layer ranged from 0.17 to 55.38 kg/m² (0 to 20 cm), with SICD of paddy soils ranging from 0.01 to 21.85 kg/m². Profile based and surface layer based paddy soil carbon storages (SCS) are 5.39 Pg and 1.79 Pg, respectively. Paddy soil organic carbon storage (SOCS) accounts for 95% of the total carbon storage. Profile based and surface layer based SOCS of paddy soils are 5.09 Pg and 1.72 Pg, respectively. Soil inorganic carbon storage (SICS) of paddy soils accounts for 5% of the total carbon storage in China. Profile based and surface layer based paddy SICS are 0.30 Pg and 0.07 Pg respectively. Among all the eight paddy soil subgroups, hydromorphic, submergenic and percogenic paddy soils account for 85.2% of the total paddy soil areas all over China. Consequently, profile based carbon storages of these three subgroups account for 78.1% of the total profile based paddy SCS in China. Most paddy soils in China are distributed in the East-China, South-China and South-west China regions, therefore, 92.6% of China’s profile based paddy SCS focuses on these three regions. The estimates of soil carbon stocks in paddy soils will help to identify areas or soil subgroups which are of particular interest for soil carbon gains and losses. Translated from Ecology and Environment, 2006, 15(4): 659–664 [译自: 生态环境]     

The unusual nature of recent snowpack declines in the North American cordillera

In western North America, snowpack has declined in recent decades, and further losses are projected through the 21st century. Here, we evaluate the uniqueness of recent declines using snowpack reconstructions from 66 tree-ring chronologies in key runoff-generating areas of the Colorado, Columbia, and Missouri River drainages. Over the past millennium, late 20th century snowpack reductions are almost unprecedented in magnitude across the northern Rocky Mountains and in their north-south synchrony across the cordillera. Both the snowpack declines and their synchrony result from unparalleled springtime warming that is due to positive reinforcement of the anthropogenic warming by decadal variability. The increasing role of warming on large-scale snowpack variability and trends foreshadows fundamental impacts on streamflow and water supplies across the western United States.     

Using DNA from museum specimens to preserve the integrity of evolutionarily significant unit boundaries in threatened species

Use of DNA from museum samples is a powerful tool to directly establish historical ESU boundaries in areas where populations of a species have been extirpated. The brush-tailed rock-wallaby (Petrogale penicillata) has suffered extensive reductions in range and population size since European settlement in Australia. Populations of this species have been grouped into three putative evolutionarily significant units (ESUs) which were likely once contiguous along the south-east coast of Australia. However, there is currently a gap of ∼320 km between extant populations of the southern and central ESUs. Conservation plans for the brush-tailed rock-wallaby include re-introductions of animals to locations within their former range. In order to preserve the historic geographic integrity of the genetic lineages within the species, it is necessary to map the boundary between the southern ESU and central ESU to allow more informed management decisions about which lineages should be used to re-stock specific geographic locations. We have extracted DNA from samples from museum specimens that come from locations between the southernmost extant colony of the central ESU and the remaining wild colony of the southern ESU. We sequenced a 177 bp interval of the left domain of the mitochondrial DNA control region and used phylogenetic analysis to group obtained sequences with previously published sequences belonging to the three ESUs. We have extended the range of the central ESU southwards and the range of the southern ESU northwards such that the gap between the ESUs is now approximately 160 km. We recommend that, where suitable historical museum collections exist, this technique be incorporated into re-introduction plans for other threatened species.     

Deactivation of the biological activity of paraquat in the soil environment: a review of long-term environmental fate

During the many years of paraquat usage, wide ranges of investigations of its environmental impact have been conducted. Much of this information has been published, but key, long-term field studies have not previously been presented and assessed. The purpose of this review is to bring together and appraise this information. Due to the nature of paraquat residues in soils, the major part (some 99.99%) of a paraquat application that reaches the soil within the typical Good Agricultural Practice (GAP) is strongly adsorbed to soils of a wide variety of textures. This is in equilibrium with an extremely low concentration in soil solution. However, the paraquat in soil solution is intrinsically biodegradable, being rapidly and completely mineralized by soil microorganisms. The deactivation of the biological activity of paraquat in soils, due to sorption, has been investigated thoroughly and systematically. It is recognized that the determination of total soil residues by severe extraction procedures provides no insight into the amount of paraquat biologically available in soil. Consequently, the key assay developed for this purpose, namely, the strong adsorption capacity-wheat bioassay (SAC-WB) method, has proved to be valuable for determination of the adsorption capacity relevant to paraquat for any particular soil. This method has been validated in the field with a series of long-term (>10 years) trials in different regions of the world. These trials have also shown that, following repeated applications of very high levels of paraquat in the field, residues not only reach a plateau but also subsequently decline. This demonstrates that the known biodegradation of paraquat in soil pore water plays an important role in field dissipation. The biological effects of paraquat in the field have been assessed under unrealistically high treatment regimes. These trials have demonstrated that the continued use of paraquat under GAP conditions will have no detrimental effects on either crops or soil-dwelling flora and fauna. Any such effects can occur only under extreme use conditions (above the SAC-WB), which do not arise in normal agricultural practice.     

The impact of harvester ants on decomposition, N mineralization, litter quality, and the availability of N to plants in the Mojave Desert

In arid areas of North America, nests of the seed-harvesting ant Pogonomyrmex rugosus tend to be elevated in mineral nitrogen and other soil nutrients relative to other microhabitats. We investigated the roles of decomposition, N mineralization, and plant nutrient uptake in maintaining high standing stocks of nutrients in P. rugosus ant nests. Decomposition rates of standard cellulose substrates placed on the surface of ant nests and other desert microhabitats suggest that conditions found in ant nests and bare areas are conducive to higher rates of decomposition than conditions under shrubs. In laboratory incubations of moist soil, net N mineralization rates were significantly higher in soil from ant nests than from bare areas and under two of three plant species. Net N mineralization rates measured in situ were much lower than those measured in laboratory incubations, but ant nest soil still exhibited higher rates at one of two sites. Litter collected from ant mounds, composed chiefly of seed chaff, was similar in N content to litter collected from underneath the dominant plant species, but had a significantly higher mean δ¹⁵N. Using this distinctive isotope signature as a tracer, we found no evidence that large perennial shrubs tap ant nests as a source of N. An invasive, annual grass species was significantly enriched in ¹⁵N, had higher leaf %N, and produced more seeds when growing on the mound than when growing several meters away; however P. rugosus nest surfaces are typically free of such annuals. We conclude that both high rates of nutrient cycling relative to other Mojave Desert microhabitats and low N utilization by the surrounding vegetation contribute to high standing stocks of mineral N in P. rugosus nests.     

Detomidine-butorphanol sedation in equine clinical practice

Combinations of detomidine (mean dose rate 13 micrograms/kg) and butorphanol (mean dose rate 26 micrograms/kg) were used to sedate 61 horses for a variety of surgical or diagnostic procedures in general equine practice. Three horses were sedated on more than one occasion. The degree of sedation was graded from 3 to 0 (deep sedation to no effect) and any side effects were recorded. Forty-three per cent of the horses were graded 3, 46 per cent were graded 2, 8 per cent were graded 1 and 3 per cent were graded 0. Bradycardia and ataxia were the major side effects. The combination was judged to be effective and safe for use in general practice. In 56 horses (92 per cent) the necessary procedure was carried out under excellent conditions and in only one horse was the degree of sedation considered to be totally unsatisfactory.