Chlamydial infections in duck farms associated with human cases of psittacosis in France

Five severe cases of psittacosis in individuals associated with duck farms were notified in France between January and March 2006. Diagnostic examination included serology and/or molecular detection by PCR from respiratory samples. As a consequence, we investigated all duck flocks (n=11) that were housed in the three farms where human infections occurred. While serology by complement fixation test was negative for all samples, cloacal and/or tracheal chlamydial excretion was detected by PCR in all three units. Notably, one duck flock was tested strongly positive in 2 of the 3 affected farms, and Chlamydophila (C.) psittaci strains were isolated from cloacal and/or tracheal swab samples from both farms. Human samples and duck isolates exhibited the same PCR-RFLP restriction pattern, which appeared to be an intermediate between genotypes A and B. Analysis of ompA gene sequences and comparison to those of the type strains showed that the isolates could not be strictly assigned to any of the generally accepted genotypes of C. psittaci. Further analysis by MLVA of the PCR-positive human samples revealed two distinct patterns, which were related to previously isolated C. psittaci duck strains.     

Drilling to gabbro in intact ocean crust

Sampling an intact sequence of oceanic crust through lavas, dikes, and gabbros is necessary to advance the understanding of the formation and evolution of crust formed at mid-ocean ridges, but it has been an elusive goal of scientific ocean drilling for decades. Recent drilling in the eastern Pacific Ocean in Hole 1256D reached gabbro within seismic layer 2, 1157 meters into crust formed at a superfast spreading rate. The gabbros are the crystallized melt lenses that formed beneath a mid-ocean ridge. The depth at which gabbro was reached confirms predictions extrapolated from seismic experiments at modern mid-ocean ridges: Melt lenses occur at shallower depths at faster spreading rates. The gabbros intrude metamorphosed sheeted dikes and have compositions similar to the overlying lavas, precluding formation of the cumulate lower oceanic crust from melt lenses so far penetrated by Hole 1256D.     

Postlarvae and juveniles of a selected line of Penaeus stylirostris are resistant to infectious hypodermal and hematopoietic necrosis virus infection

A susceptibility study of postlarvae (PL) and juvenile Super Shrimp®, a selected line of Penaeus stylirostris, was conducted to compare their resistance to infectious hypodermal and hematopoietic necrosis virus (IHHNV) infection to that of a specific pathogen free (SPF) population of P. vannamei. Super Shrimp® PLs were fed with IHHNV-infected shrimp tissue for 2 days and then maintained on a pelletized ration for an additional 28 days. PLs were sampled at days 0, 1, 2, 3, 4, 6, 10, 15, 20, 25 and 30. There was no apparent mortality during the experimental period. Tissue DNA extracted from the PLs was analyzed for the presence of IHHNV by PCR. Low levels of IHHNV were detected only in DNA extracts from samples at days 1, 2, and 3. No IHHNV DNA was detected from days 4 to 30. The days that the PLs were weakly IHHNV-PCR positive were during the period that they were being fed with IHHNV-tissue, and thus, the IHHNV DNA signal was suspected to be from the infected tissue used as a feed. Through both histology and in situ hybridization, we confirmed that tissues of Super Shrimp® PLs were not infected with IHHNV. PCR results of another IHHNV challenge study with juveniles of Super Shrimp® were similar to those with PLs. These results indicate that IHHNV did not replicate in the PL and juvenile Super Shrimp®. In contrast, P. vannamei juveniles, which were used as a positive control, showed a more intense IHHNV infection, as determined by PCR detection, beginning at 6 days postchallenge and increasing throughout the remainder of the study. In addition, the IHHNV-infected P. vannamei at 30 days postchallenge showed histological changes characteristic of IHHNV infection and had a positive reaction for IHHNV with in situ hybridization. Our studies show that Super Shrimp® are resistant to IHHNV infection. This is the first unequivocal demonstration of resistance to viral infection in shrimp.     

Les lagunes ivoiriennesThe lagoons of the Ivory Coast

The first evaluation of the acquired knowledge on the brackish water environment of the Ivory Coast is presented here.Situated along the north coast of the Gulf of Guinea, between 2°50′ W and 5°25′ W, the lagoons have a total surface area of 1200 km². The climate of the coast area is similar to the equatorial climate. The annual rainfall is about 2000 mm and distributed in two rainy seasons. Each of the three main lagoons has a different hydrological system which depends on the contribution of the continental fresh water and on exchange with the marine environment. In the Ebrié lagoon, the annual contribution of the fresh water is estimated to be four times the volume of the lagoon. The entry of the sea water is 14 times this volume.The temperature of the water averages 29°C and varies little throughout the year. In the Ebrié lagoon for example, there is considerable variation in salinity over the area depending on the seasonal contribution of the continental fresh water and the exchange with the sea water. The degree of salinity also depends on the morphology and the bathymetry of the different parts. Many intermediate situations are noted, from high gradients (seasonal and vertical) to low gradients within stable oligohaline areas (salinity from 3 to 5‰. On the contrary, the Aby lagoon is less influenced by the marine environment. The salinity gradient is more stable, and the water is more oligohaline.In the marine influenced area, the seasonal variation of pH is the result of mixing between sea and fresh water. However, a low pH is noted particularly in the western part of the Ebrié Lagoon. The concentrations of dissolved oxygen in the surface water are generally 4–7 ppm. Its vertical distribution varies greatly during the different seasons and over the different areas. Deoxygenation conditions are often observed, for example in some polluted bays in the Abidjan area, and in the central basin of the Aby lagoon. Generally, the desalinated water is characterized by its poor nutrient contents and particularly the lack of nitrate. This phenomenon probably is related to the rapid recycling of the nutrients. The biomass of the phytoplankton is generally very high and the concentration of chlorophyll a represents more than 35 mg/m³ in the western part of the Ebrié lagoon. The corresponding primary production is about 300 mg of carbon/m³ per hour.The zooplankton is represented mostly by the copepod Acartia clausi. The first estimation of the turnover time of the total biomass is between 1.2 and 3.8 days. In the population of the benthos, molluses represent the bulk of the biomass. The importance of some crustaceans—crabs and shrimps—is noted.Among the ichthyologic fauna, there are many types of biological cycles depending on the various types of salinity tolerances and on the conditions of the reproduction cycle. The lagoon stocks are exploited by means of various types of artisanal fishing gear (individual or collective). The estimation of catches for 1977 was about 7000 tons (of which 60% was represented by Ethmalosa), 70% of the total catch is made by purse seines and beach seines. For the three lagoons, the production should probably be 15–20 000 metric tons, despite obvious signs of over-exploitation.Conclusions are oriented towards a discussion of the heterogeneity, the productivity and the fragility of the lagoon ecosystems.     

Comparison of viraemia- and clinical-based estimates of within- and between-pen transmission of classical swine fever virus from three transmission experiments

Analyses of recent classical swine fever (CSF) epidemics in the European Union have shown that silent circulation of CSF virus (CSFV) occurs before the first outbreak is detected and this may lead to a large epidemic. However, severity of CSF disease signs may be linked with efficacy of disease transmission, the most severely affected animals having a higher infectivity than the less affected ones. The purpose of this study was to combine disease transmission quantification methods with CSF clinical signs quantification tools to investigate whether clinical signs, considered as infectivity markers, may allow us to calculate reliable estimates for disease transmission parameters. Data from three transmission experiments were used, varying according to the viral strain (Eystrup or Paderborn) and to the contact structure between experimentally inoculated and contact animals (direct or indirect contact). Within- and between-pen basic reproduction ratios (R0) were compared using viraemia data or clinical data. Between-pen R0 estimates were close and not significantly >1, with either strain or computation mode (using viraemia or clinical data). Conversely, within-pen R0s (Paderborn strain) computed using clinical data appeared higher than the estimates obtained using viraemia data. A models comparison (Bayes information criterion) showed a better fit of the clinical-based models, for both strains. This suggests that, in affected herds, the most severely affected animals could play a prominent role in CSFV transmission.     

Isolation and characterisation of a xylanase inhibitor Xip-II gene from durum wheat

Cereals contain xylanase inhibitor proteins (XIPs) which inhibit microbial xylanases from glycoside hydrolase families 10 and 11. Here, we report for the first time the isolation and characterisation of a genomic clone containing a xylanase inhibitor gene. This gene, Xip-II, isolated from a durum wheat genomic library (Triticum durum Desf.) encodes a mature protein of 307 amino acid (aa) residues that shares highest aa sequence identity (64%) with the rice RIXI xylanase inhibitor. XIP-II showed inhibition against family 11 xylanases and no chitinase activity. In silico analysis of the 5′ promoter region of Xip-II revealed sequences with similarity to known cis regulatory elements upstream from the initiation codon. In particular, the identification of a number of cis-acting elements controlling the expression of defence and seed-specific genes supports the role for this class of inhibitors in plant defence against pathogens but also provides new clues on a potential role in plant development.     

Resistance to various antibiotics of Salmonella and Escherichia coli isolated from registrable farm feeds

Resistance to 20 antibiotics of 128 Salmonella and 97 Escherichia coli isolates from various registrable farm feeds was determined. A high frequency of comparatively low levels of resistance was found in both the Salmonella and E. coli isolates. This, together with an elevated frequency of multiple resistance, indicates that problems related to an effective transfer in bacterial populations of resistance to certain antibiotics are a distinct possibility. The addition of antibiotics, such as penicillin and tetracyclines, to animal feeds can create conditions for rapid selection amongst bacteria resistant to antibiotics. The numbers of resistant bacteria in the animal environment may be increased and may lead to the development of veterinary and human health problems from the possible transfer of antimicrobial resistance from animal pathogens to human pathogens or spreading in the human population of animal pathogens resistant to antibiotics. There is a need for caution in the use of antibiotics, particularly in animal feeds. Extended survey of, and epidemiological research on, farm feeds, manufacturing mills and animal production units are emphasized.     

Presence of the <Emphasis Type="Italic">Eucalyptus</Emphasis> gall wasp <Emphasis Type="Italic">Ophelimus maskelli</Emphasis> and its parasitoid <Emphasis Type="Italic">Closterocerus chamaeleon</Emphasis> in Portugal: First record,geographic distribution and host preference

The Eucalyptus gall wasp Ophelimus maskelli (Hymenoptera: Eulophidae) and its parasitoid Closterocerus chamaeleon (Hymenoptera: Eulophidae) were observed for the first time in Portugal, in 2006 and 2007, respectively. Data on the distribution of O. maskelli in Portugal, differences in the susceptibility of two host species, Eucalyptus globulus and Eucalyptus camaldulensis, and parasitism by C. chamaeleon are given.