Construction of risk assessment manual for genetically modified rice (Oryza sativa L.)

Journal of Crop Science and Biotechnology - Worldwide, grain consumption is increased and grain prices are rising. This has led to a steady increase in the production of highly productive and more...     

Development of a variable number of tandem repeats typing scheme for the bacterial rice pathogen Xanthomonas oryzae pv. oryzicola

Xanthomonas oryzae pv. oryzicola is an important bacterial pathogen responsible for outbreaks of bacterial leaf streak (BLS) on rice, mostly occurring in Asia and parts of Africa. To better monitor epidemics and assess population structures, efficient tools that allow the precise identification and diagnosis of pathogenic populations are needed. In this study, we explored variable numbers of tandem repeats (VNTR) as a fast, reliable, and cost-effective molecular typing tool. Screening of three X. oryzae pv. oryzicola genome sequences (Philippine strain BLS256, Chinese strain GX01, and Malian strain MAI10) predicted 28 candidate VNTR loci. Primer pairs for polymerase chain reaction (PCR) amplification of all 28 loci were designed and applied to a panel of 20 X. oryzae pv. oryzicola strains originating from Asia and Africa. Sequencing of PCR amplicons revealed 25 robust and polymorphic VNTR loci that are shared among Asian and African X. oryzae pv. oryzicola strains. A dendrogram constructed from 25 VNTR loci indicated that most Asian strains are clearly discriminated from African strains. However, in agreement with previous reports, one strain from Mali is related to Asian strains, pointing to a possible introduction of Asian strains to the African continent. The new VNTR-based tool described here is useful for studies of population structures and epidemiological monitoring of X. oryzae pv. oryzicola.     

A rapid, sensitive, and cost-efficient assay to estimate viability of potato cyst nematodes

Potato cyst nematodes (PCNs) are quarantine organisms, and they belong to the economically most relevant pathogens of potato worldwide. Methodologies to assess the viability of their cysts, which can contain 200 to 500 eggs protected by the hardened cuticle of a dead female, are either time and labor intensive or lack robustness. We present a robust and cost-efficient viability assay based on loss of membrane integrity upon death. This assay uses trehalose, a disaccharide present at a high concentration in the perivitelline fluid of PCN eggs, as a viability marker. Although this assay can detect a single viable egg, the limit of detection for regular field samples was higher, ≈10 viable eggs, due to background signals produced by other soil components. On the basis of 30 nonviable PCN samples from The Netherlands, a threshold level was defined (ΔA(trehalose) = 0.0094) below which the presence of >10 viable eggs is highly unlikely (true for ≈99.7% of the observations). This assay can easily be combined with a subsequent DNA-based species determination. The presence of trehalose is a general phenomenon among cyst nematodes; therefore, this method can probably be used for (for example) soybean, sugar beet, and cereal cyst nematodes as well.     

Untersuchungen zur Fangleistung von Schlitzfallen und Fangholzhaufen bei der lokalen Dichteabsenkung von Buchdrucker (Ips typographus)-Populationen

Two kinds of pheromone-based trap systems are used in the integrated system against the European Spruce Bark Beetle: a standardized commercial slot-trap and an attract-and-kill system using insecticide-coated spruce wood. To determine the individual benefits and limits in both systems, a comparative survey has been done in 2008, respecting the slightly different requirements for deploying both systems with maximum efficiency. The observed results showed that both systems are able to attract large numbers of spruce bark beetles, however the wooden attract-and-kill system removed both larger numbers and higher percentages of the attracted individual beetles. During the survey, the wood traps were able to incapacitate between 80 and 90?% of the attracted beetles, while the slot-traps kept only 50?C60?% contained. While the use of a non-specific insecticide in a freely accessible trap system always bears the risk of attracting and killing individuals of non-targeted species, the survey gave no indication that specialised antagonists of the spruce bark beetle or other non-target-species has been overly affected. The percentage of non-target-organisms has been 0.3?% in total. It was concluded that, while both systems have the capability to reduce the local population of European Spruce Bark Beetles, the natural wood trap system using an insecticide has the ability to control a much larger population and should therefore be considered the primary choice if the conditions on the site indicating a high risk of a continuous bark beetle infestation.     

Human α-defensin 6 promotes mucosal innate immunity through self-assembled peptide nanonets

Defensins are antimicrobial peptides that contribute broadly to innate immunity, including protection of mucosal tissues. Human α-defensin (HD) 6 is highly expressed by secretory Paneth cells of the small intestine. However, in contrast to the other defensins, it lacks appreciable bactericidal activity. Nevertheless, we report here that HD6 affords protection against invasion by enteric bacterial pathogens in vitro and in vivo. After stochastic binding to bacterial surface proteins, HD6 undergoes ordered self-assembly to form fibrils and nanonets that surround and entangle bacteria. This self-assembly mechanism occurs in vivo, requires histidine-27, and is consistent with x-ray crystallography data. These findings support a key role for HD6 in protecting the small intestine against invasion by diverse enteric pathogens and may explain the conservation of HD6 throughout Hominidae evolution.     

A three-stage symbiosis forms the foundation of seagrass ecosystems

Seagrasses evolved from terrestrial plants into marine foundation species around 100 million years ago. Their ecological success, however, remains a mystery because natural organic matter accumulation within the beds should result in toxic sediment sulfide levels. Using a meta-analysis, a field study, and a laboratory experiment, we reveal how an ancient three-stage symbiosis between seagrass, lucinid bivalves, and their sulfide-oxidizing gill bacteria reduces sulfide stress for seagrasses. We found that the bivalve-sulfide-oxidizer symbiosis reduced sulfide levels and enhanced seagrass production as measured in biomass. In turn, the bivalves and their endosymbionts profit from organic matter accumulation and radial oxygen release from the seagrass roots. These findings elucidate the long-term success of seagrasses in warm waters and offer new prospects for seagrass ecosystem conservation.     

Adenylate cyclases of Trypanosoma brucei inhibit the innate immune response of the host

The parasite Trypanosoma brucei possesses a large family of transmembrane receptor-like adenylate cyclases. Activation of these enzymes requires the dimerization of the catalytic domain and typically occurs under stress. Using a dominant-negative strategy, we found that reducing adenylate cyclase activity by about 50% allowed trypanosome growth but reduced the parasite's ability to control the early innate immune defense of the host. Specifically, activation of trypanosome adenylate cyclase resulting from parasite phagocytosis by liver myeloid cells inhibited the synthesis of the trypanosome-controlling cytokine tumor necrosis factor-α through activation of protein kinase A in these cells. Thus, adenylate cyclase activity of lyzed trypanosomes favors early host colonization by live parasites. The role of adenylate cyclases at the host-parasite interface could explain the expansion and polymorphism of this gene family.     

Recent plant diversity changes on Europe's mountain summits

In mountainous regions, climate warming is expected to shift species' ranges to higher altitudes. Evidence for such shifts is still mostly from revisitations of historical sites. We present recent (2001 to 2008) changes in vascular plant species richness observed in a standardized monitoring network across Europe's major mountain ranges. Species have moved upslope on average. However, these shifts had opposite effects on the summit floras' species richness in boreal-temperate mountain regions (+3.9 species on average) and Mediterranean mountain regions (-1.4 species), probably because recent climatic trends have decreased the availability of water in the European south. Because Mediterranean mountains are particularly rich in endemic species, a continuation of these trends might shrink the European mountain flora, despite an average increase in summit species richness across the region.     

Automated observation and analysis of earthworm surface behaviour under experimental habitat quality and availability conditions

Currently, the driving factors of active earthworm dispersal across the soil surface are not sufficiently understood, and distances traversed by individual earthworms have rarely been quantified. Research progress has been hampered by the lack of adequate observation methods as well as fast, objective and quantitative measurements of nocturnal earthworm behaviour.In this work, we report on the potential of a new, automated method using infrared-sensitive webcams and computer image analysis. Nightly surface activities of Lumbricus terrestris L. were monitored quantitatively while manipulating levels of disturbance, burrow availability and congener presence in standard observation units.The automated observation system proved to be simple and inexpensive to build, provided reliable quantitative measures of locomotive behaviour without animal disturbance, and considerably reduced human workload and bias.Waterlogging of the burrow zone stimulated surface activities around and away from the home burrow as compared to habitat disturbance by pesticide application and vibration. However, dispersing earthworms never settled in prefabricated burrows. Surface activity of individuals subjected to waterlogged conditions was influenced by the availability of alternative habitat. Minimal habitat disturbance (vibration) and the presence of conspecific individuals resulted in an increased amount of burrow-anchored, possibly sexually oriented, behaviour, but reciprocal burrow visits and mating were not observed. Pesticide application did not result in dispersal, increased foraging activities or sexual attraction attempts during this short-term study.The presence, extent and mechanisms of the remote assessment of important cues in the surroundings of the home burrow by L. terrestris need further research. Infrared monitoring opens new research avenues of earthworm surface behaviour studies (e.g. density-dependent dispersal, habitat selection, (re)colonization, invasion).