Synthetic Aperture Radar (SAR) images improve habitat suitability models

Context

The ability to detect ecological networks in landscapes is of utmost importance for managing biodiversity and planning corridors.

Objectives

The objective of this study was to evaluate the information provided by a synthetic aperture radar (SAR) image for landscape connectivity modeling compared to aerial photographs (APs).

Methods

We present a novel method that integrates habitat suitability derived from remote sensing imagery into a connectivity model to explain species abundance. More precisely, we compared how two resistance maps constructed using landscape and/or local metrics derived from AP or SAR imagery yield different connectivity values (based on graph theory), considering hedgerow networks and forest carabid beetle species as a model.

Results

We found that resistance maps using landscape and local metrics derived from SAR imagery improve landscape connectivity measures. The SAR model is the most informative, explaining 58% of the variance in forest carabid beetle abundance. This model calculates resistance values associated with homogeneous patches within hedgerows according to their suitability (canopy cover density and landscape grain) for the model species.

Conclusions

Our approach combines two important methods in landscape ecology: the construction of resistance maps and the use of buffers around sampling points to determine the importance of landscape factors. This study was carried out through an interdisciplinary approach involving remote sensing scientists and landscape ecologists. This study is a step forward in developing landscape metrics from satellites to monitor biodiversity.

     

Molecular characerization of the interaction between the fungal pathogen Cladosporium fulvum and tomato

The fungus Cladosprium fulvum is a biotrophic leaf pathogen of tomato. The fungus develops in the intercellular space without forming specialized feeding structures and does not affect the leaf tissue. The outcome of the C. fulvum-tomato interaction can be described by the gene-for-gene model. Failure of infection is expressed by a hypersensitive response. Two fungal proteins, ECP1 and ECP2, have been isolated and their corresponding genes have been cloned. In a compatible interaction including many physiological races ECP1 and ECP2 are highly produced and a role in pathogenicity is suggestive. The ecp1 gene shows some homology with tumor necrosis factor receptors (TNFRs) while the ecp2 gene shows no homology with sequences known in data bases. However, disruption of one of the two genes showed no reduced pathogenicity of the fungus. Two race-specific elicitors, AVR4 and AVR9, have been isolated and their corresponding genes have been cloned. The avirulence genes Avr4 and Avr9 are only present in C. fulvum avirulent on Cf-4 and Cf-9 cultivars, respectively. The expression of these two genes is, like the expression of the ecp genes, highly induced when the fungus grows in planta. Disruption of the Avr9 gene in wild type avirulent races leads to virulence on tomato genotypes carrying the complementary resistance gene Cf-9. A single base-pair change in the avirulence gene Avr4 leads to virulence on tomato genotypes carrying the Cf-4 resistance gene. Isolation, characterization and possible function of ECP1, ECP2, AVR4, and AVR9 will be discussed.     

Comparative efficiencies of isopropyl and tert-butyl alcohols for extracting zeins from maize endosperm

Protein of endosperm of maize grains originating from three wild-type inbreds and their opaque-2 versions were solubilized in diverse extracts (E) by the sequential use of 0.5 M NaCl, water (E(1,2)), alcohol plus a reducing agent (E(3)), and salt plus a reducing agent (E(4)). Zeins were isolated in extracts E(3) and E(4) obtained by using 55% (w/w) isopropyl alcohol (i-PrOH) + 0.2% dithiothreitol (DTT) followed by 0.5 M NaCl + 0.2% DTT buffered at pH 10 or 60% tert-butyl alcohol (t-BuOH) + 0.2% DTT followed by 0.5% sodium acetate + 0.2% DTT in 30% t-BuOH. For a given genotype the percentage of extracted zeins was independent of the nature of the alcohol. The latter had a slight effect on the respective magnitude of E(3) and E(4): E(3) increased at the expense of E(4) when t-BuOH was substituted to i-PrOH for their isolation. The percentage of the total endosperm nitrogen present in E(3) + E(4) was identical to that of fractions F(II) + F(III) + F(IV) isolated according to the classical Landry-Moureaux extraction procedure. SDS-PAGE analysis revealed the presence of all types of zeins (alpha, beta, gamma, and delta) in E(3) and F(III), residual zeins in E(4) isolated with t-BuOH, and streaking only in E(4) and F(IV) isolated with NaCl at pH 10. The data together with those of the literature were discussed with regard to the influence of procedure on the yield of zeins using alcoholic extraction.     

Transpirational response to water availability for winter wheat as affected by soil textures

Soil texture and evaporative demand have been reported to be the main factors which influence the transpirational response to soil water deficits. However, experimental evidences are not enough. The objective of this study was to investigate the transpirational response to soil water availability in soils of different textures under different evaporative demand levels. The three main soils of the Loess Plateau of China (loamy clay, clay loam and sandy loam) were selected and six constant soil water treatments were applied for winter wheat (Triticum aestivum L.) grown in pots. In order to reduce the influence of environmental conditions and plant factors, a normalized daily transpiration rate was used to develop the relationships with volumetric soil water content and soil water suction. Results showed that, under various levels of evaporative demand, a linear-plateau function with a critical value could be used to describe the dynamic change of the normalized transpiration rate with soil drying. Soil texture significantly influenced both the critical and the slope values of the linear-plateau equations, however, evaporative demand significantly affected the critical values of volumetric soil water content and soil suction for the loamy clay and clay loam only. Therefore, for saving water, different strategies are needed for these three soils.     

Signal-driven computations in speech processing

Learning a language requires both statistical computations to identify words in speech and algebraic-like computations to discover higher level (grammatical) structure. Here we show that these computations can be influenced by subtle cues in the speech signal. After a short familiarization to a continuous speech stream, adult listeners are able to segment it using powerful statistics, but they fail to extract the structural regularities included in the stream even when the familiarization is greatly extended. With the introduction of subliminal segmentation cues, however, these regularities can be rapidly captured.     

Evaluation of auditory function in a population of clinically healthy cats using evoked otoacoustic emissions

Cats may demonstrate deafness due to a variety of aetiologies and the current preferred method for assessing auditory function is the brainstem auditory evoked response (BAER). The BAER has largely been replaced by otoacoustic emission (OAE) testing in human neonatal deafness screening as the equipment is more readily available, is cheaper and the test is less invasive and simpler. This is the first study to demonstrate that transient evoked OAEs (TEOAE) and distortion product OAEs (DPOAE) can be recorded in cats using commercially available equipment. Protocols for recording the emissions and analysing the results are given. DPOAE testing is suggested to be quicker in this population of healthy cats and shows promise in rapidly providing detailed information about auditory function at a variety of different frequencies.     

Carbonate accumulation and weathering of the granitic substratum of Tanecherfi Basin, northeastern Morocco

In the Tanecherfi Basin a granitic body is partly overlain by a calcrete, which only seems superimposed.Morphologically, the profiles consist of three horizons. The lowest one corresponds to a filling of carbonates into the weathered granitic rocks. Microscopically, the carbonates cut the primary minerals along open cracks and voids. In the second horizon, the increased carbonation results in calcite septa that gradually isolate rock cells inclosed in a micritic matrix forming a cortex. Gradually, the rock residues vanish and glaebules appear. The upper horizon is characterized by a micritic matrix associated with the disappearance of the nodules.These morphologic relations are confirmed by chemical data. The primary minerals are weathered: silica is locally released and precipitates partly around the glaebules; magnesium combines into the carbonate structure, but locally combines with the silica of the cortex of the glaebules. Aluminium seems to be totally removed.The granite-calcrete relationships indicate a weathering process rather to a simple superposition.     

Agronomic performance of no-tillage relay intercropping with maize under smallholder conditions in Central Brazil

In the context of conservation agriculture on small scale farms of the Brazilian Cerrado, we hypothesized that planting a cover crop in relay with a commercial crop improves the efficiency of use of available natural resources, increasing biomass for use as fodder without reducing the grain yield of the main crop. The objective of this study was to measure the performance of two intercropped systems in terms of total above-ground biomass production and maize (Zea mays) grain yield: pigeon pea (Cajanus cajan) and Brachiaria (Brachiaria ruziziensis) sown as cover crops in established maize under a no-tillage management. The cover crops were sown at two different dates and a comparison was made with the three crops sown as a sole crop at the early sowing date. The experiment was conducted during the 2007-2008 and 2008-2009 growing seasons. Maize grain yield was not reduced by the presence of the relay cover crops in comparison with maize as the sole crop, even when the cover crop was sown soon after maize emergence. In contrast, the production of above-ground biomass by the cover crop was significantly lower when grown with maize than it was when grown as a sole crop. In the intercropped systems, when sown early, the cover crop produced higher total biomass than when sown late. Total above-ground biomass production of maize intercropped with a cover crop was much higher than that of any of the crops sown alone: the total biomass (average of the two growing seasons) produced by maize and pigeon pea was more than double that of maize grown alone. The land equivalent ratio (LER) of maize grain yield and biomass production was higher than one whatever the intercropped system used. It was particularly high when maize was intercropped with early sown pigeon pea; grain yield LER and biomass LER reaching, respectively, 1.72 and 1.73 in 2007-2008 and 2.02 and 2.03 in 2008-2009. These high LER values provide evidence for the complementary and the high efficiency of use of available resources by the intercropped plants and thus the advantage of such systems to produce both maize grain and cover crop forage under the conditions of our study.