Introgression of <Emphasis Type="Italic">Gossypium barbadense</Emphasis> L. into Upland cotton germplasm RMBUP-C4S1

Gossypium barbadense L. cotton has significantly better fiber quality than Upland cotton (G. hirsutum L.); however, yield and environmental adaptation of G. barbadense is not as wide as Upland. Most cotton in the world is planted to Upland cultivars. Many attempts have been made, over a considerable number of years, to introgress fiber quality alleles from G. barbadense into Upland. However, introgression barriers, primarily in the form of interspecific incompatibility, have limited these traditional approaches. The use of chromosome substitution lines (CSL) as a bridge should provide a more efficient way to introgress alleles from G. barbadense into Upland. We crossed 18 G. barbadense CSL to three cultivars and developed a random mated population. After five cycles of random mating followed by one generation of self-pollination to increase the seed supply, we grew the random mated population and used 139 G. barbadense chromosome specific SSR markers to assess a random sample of 96 plants for introgression. We recovered 121 of 139 marker loci among the 96 plants. The distribution of the G. barbadense alleles ranged from 10 to 28 alleles in each plant. Among the 96 plants we found individual plants with marker loci from 6 to 14 chromosomes or chromosome arms. Identity by descent showed little relatedness among plants and no population structure was indicated by a heat map. Using CSL we were able to develop a mostly Upland random mated population with considerable introgression of G. barbadense alleles which should be useful for breeding.     

Marker-assisted backcross selection in an interspecific <Emphasis Type="Italic">Cucumis</Emphasis> population broadens the genetic base of cucumber (<Emphasis Type="Italic">Cucumis sativus</Emphasis> L.)

Cucumber (Cucumis sativus L.) is a major cucurbit vegetable species whose genetic base has been drastically reduced during its domestication. The crop’s narrow genetic base (3–12% DNA polymorphism) has resulted from the use of limited genetic material and intense selection during plant improvement. Recently, however, interspecific hybridization has been successful in Cucumis via mating of C. hystrix Chakr. and C. sativus, which resulted in the amphidiploid C. hytivus. We report herein a marker-assisted strategy for increasing genetic diversity in cucumber through introgression backcrossing employing C. hytivus. The comparatively late-flowering but high-yielding, indeterminate, monoecious line WI 7012A (P₁; donor parent) derived from a C. hytivus × C. sativus-derived line (long-fruited Chinese C. sativus cv. Beijingjietou) was initially crossed to the determinate, gynoecious C. sativus line WI 7023A (P₂; recurrent parent 1), and then advanced backcross generation progeny (BC₂) were crossed with the gynoecious indeterminate line WI 9-6A (P₃; recurrent parent 2). More specifically, a single F₁ individual (P₁ × P₂) was backcrossed to P₂, and then BC progeny were crossed to P₂ and P₃, where marker-assisted selection (MAS) for genetic diversity (8 mapped and 16 unmapped markers; designated Sel) or no selection (designated NSel) was applied to produce BC₃P₂ (Sel) and BC₃P₃ (Sel), and BC₂P₂ (NSel) and BC₂P₂S₁ (NSel) progeny. Relative vegetative growth, number of lateral branches (LB), days to flowering (DF), yield (fruit number), and fruit quality [as measured by length:diameter (L:D) and endocarp:total diameter (E:T) ratios] were assessed in parents and cross-progeny. DF varied from ~20 (BC₃P₂Sel) to ~25 days (BC₂P₃Sel) among the populations examined, where progeny derived from P₂ possessed the shortest DF. Differences in cumulative yield among the populations over six harvests were detected, varying from ~8 fruits per plant in BC₃P₂ (Sel) to ~39 fruits per plant in BC₂P₃ (Sel). Although the vigorous vegetative growth of line P₁ was observed in its backcross progeny, highly heterozygous and polymorphic backcross progeny derived from P₃ were comparatively more vigorous and bore many high-quality fruit. Response to selection was detected for LB, DF, L:D, and E:T, but the effectiveness of MAS depended upon the parental lines used. Data indicate that the genetic diversity of commercial cucumber can be increased by introgression of the C. hystrix genome through backcrossing.     

Detecting epistatic effects associated with cotton traits by a modified MDR approach

Genetic expression of a trait is complicated and it is usually associated with many genes including their interactions (epistasis) and genotype-by-environment interactions. Genetic mapping currently focuses primarily on additive models or marginal genetic effects due to the complexity of epistatic effects. Thus, there exists a need to appropriately identify favorable epistatic effects for important biological traits. Several multifactor dimensionality reduction (MDR) based methods are important resources to identify high-order gene–gene interactions. These methods are mainly focused on human genetic studies. Many traits in plant systems are not only quantitatively inherited but also are often measured in repeated field plots under multiple environments. In this study, we proposed a mixed model based MDR approach, which is suitable for inclusion of various fixed and random effects. This approach was used to analyze a cotton data set that included eight agronomic and fiber traits and 20 DNA markers. The results revealed high order epistatic effects were detected for most of these traits using this modified MDR approach.     

Prevalence of gastric ulcers in Thoroughbred broodmares in pasture: a preliminary report

Gastroscopic examinations were performed in 62 Thoroughbred broodmares (33 pregnant, 29 non-pregnant) at one breeding farm to investigate the prevalence of gastric ulceration. Age, pregnancy status, race earnings, last race start, herd size, medical history, number of live foals, breeding years, feed type and number of feedings were recorded, plus coat condition and body condition score were determined. Twenty-one mares were re-evaluated after foaling, and the foaling date, foal weight at birth and placenta weight were recorded.The overall prevalence of gastric ulcers was 70.9%, with a median ulcer score of 3.0 (range: 2–5). Most ulcers were present on the squamous portion of the stomach, while two mares had glandular ulcers. There were no differences in the presence, location and severity of gastric ulcers between pregnant and non-pregnant mares. Furthermore, there were no significant associations between the variables measured and the presence of gastric ulceration. The prevalence of gastric ulceration in this specific population of horses was higher than expected and further investigation is warranted to determine the factors that contributed to this finding.     

Short-term responses of ground-active beetles to alternative silvicultural systems in the Warra Silvicultural Systems Trial,Tasmania, Australia

The Warra Silvicultural Systems Trial (SST) in Tasmania, Australia provides a framework for investigating the responses of beetles (Order: Coleoptera) to three alternative systems in lowland wet eucalypt forest: aggregated retention; dispersed retention; and understorey islands retained in clearfelled areas. Beetles from three families known to be sensitive to forest management, the families Carabidae (ground-beetles), Curculionidae (weevils) and Leiodidae (fungus-beetles), were collected with pitfall traps prior to harvest, and in the first and third years post-harvest. The retained aggregates in the aggregated retention system maintained beetle assemblages reasonably typical of mature forests, at least in these early years following harvesting. These aggregates appear to provide a stable habitat, with similar species composition in the first and third years post-harvest. In contrast, the harvested areas of the aggregated retention system contained low numbers of beetle species affiliated with mature forest, as did the understorey islands and the dispersed retention system. Relative to clearfelling, all alternative silvicultural systems appeared to be of some benefit to beetles affiliated with mature forest, but aggregated retention retained far greater numbers of these beetles compared to the other systems in Tasmanian wet eucalypt forest.     

Legume cover cropping effects on early growth and soil nitrogen supply in eucalypt plantations in south-western India

Growth and soil N supply in young Eucalyptus tereticornis stands at two sites in Kerala, India, were examined in response to cover cropping with three legume species (Pueraria phaseoloides, Stylosanthes hamata, and Mucuna bracteata). The effects of legume residues on soil N supply were investigated in a long-term (392 day) laboratory incubation using leaching micro-lysimeters. Residues from the eucalypt and legume species had different rates of net N release during the laboratory incubation. Net N release was significantly related to residue N concentration (R² =0.94), the C:N ratio (R² =0.91), the lignin:N ratio (R² =0.83), and the (lignin + soluble polyphenol):N ratio (R² =0.95). Nitrogen release rates declined in the order Mucuna > Pueraria > Eucalyptus > Stylosanthes. There was no net N release from Stylosanthes residues during the 392-day laboratory incubation, whereas Mucuna and Pueraria released N throughout the incubation period. Net N release from mixtures of legume and eucalypt residues was not additive in the early phase of the incubation, probably because eucalypt residues initially immobilized a portion of the legume-derived N in addition to the soil-derived N. Legume establishment had no significant effect on tree growth at one site (Kayampoovam), but resulted in depressed tree growth at the lower rainfall site (Punnala) at 18 months. There were no significant treatment effects on growth at Punnala after that time. Cover cropping with legumes during the early phase of forest plantation growth may be a useful mechanism to enhance soil N supply and optimize the synchrony between N supply and tree N uptake. Although these effects did not translate into improved plantation growth in the 3 years of this study, improved soil organic matter and N fertility may help ensure sustainable productivity over several rotations in the future. This study showed that the effect of legumes on N dynamics varies markedly with legume species. This, together with other factors (e.g. competition with trees, N fixation capacity), will be important in selecting suitable species for cover cropping in forest plantations.     

Is the decline of soil microbial biomass in late winter coupled to changes in the physical state of cold soils?

During winter when the active layer of Arctic and alpine soils is below 0 °C, soil microbes are alive but metabolizing slowly, presumably in contact with unfrozen water. This unfrozen water is at the same negative chemical potential as the ice. While both the hydrostatic and the osmotic components of the chemical potential will contribute to this negative value, we argue that the osmotic component (osmotic potential) is the significant contributor. Hence, the soil microorganisms need to be at least halotolerant and psychrotolerant to survive in seasonally frozen soils. The low osmotic potential of unfrozen soil water will lead to the withdrawal of cell water, unless balanced by accumulation of compatible solutes. Many microbes appear to survive this dehydration, since microbial biomass in some situations is high, and rising, in winter. In late winter however, before the soil temperature rises above zero, there can be a considerable decline in soil microbial biomass due to the loss of compatible solutes from viable cells or to cell rupture. This decline may be caused by changes in the physical state of the system, specifically by sudden fluxes of melt water down channels in frozen soil, rapidly raising the chemical potential. The dehydrated cells may be unable to accommodate a rapid rise in osmotic potential so that cell membranes rupture and cells lyse. The exhaustion of soluble substrates released from senescing plant and microbial tissues in autumn and winter may also limit microbial growth, while in addition the rising temperatures may terminate a winter bloom of psychrophiles.Climate change is predicted to cause a decline in plant production in these northern soils, due to summer drought and to an increase in freeze-thaw cycles. Both of these may be expected to reduce soil microbial biomass in late winter. After lysis of microbial cells this biomass provides nutrients for plant growth in early spring. These feedbacks, in turn, could affect herbivory and production at higher trophic levels.