Morphological and molecular evaluation for germinability in rice varieties under low-temperature and anaerobic conditions

Direct-seeding cultivation of rice is increasing in Asia instead of transplanting system, because of its lower cost and operational simplicity. Low-temperature germinability (LTG) and anaerobic germinability (AG) are important characters for breeding of varieties for wide-spread adaptation of direct-seeding cultivation in rice. This study was performed to evaluate LTG and AG of seven rice varieties and identify varieties with strong germinability on both low-temperature and anaerobic conditions. The mean germination rate and germination vigor of seven varieties were 51.7% and 6.0 under low-temperature condition, respectively. Among these varieties, Cheongcheongjinmi and Hwanggeumnodeul had the highest germination rate of 80%, indicating that Cheongcheongjinmi and Hwanggeumnodeul have a good LTG. In anaerobic conditions, the germination rate and coleoptile length for all varieties were 47.6% and 3.2 cm, respectively. Of them, the highest germination rate and coleoptile length were observed in Subo and Hopum, respectively, suggesting that these two varieties are tolerant to anaerobic during germination stage. Molecular evaluation by SDS-PAGE revealed that the protein patterns differed at 50 kDa, 40 kDa, and 22 kDa between low-temperature and anaerobic conditions. Varieties identified as good LTG or AG in this study may be used for developing new direct-seeding rice cultivars through pyramiding these traits in the breeding program.     

The complete chloroplast genome sequence of <Emphasis Type="Italic">Glycyrrhiza lepidota</Emphasis> (Nutt.) Pursh - An American wild licorice

The wild species are considered as primary and secondary genepools for the world’s most important food crops. Here, we sequenced the complete chloroplast (cp) genome sequence of an American wild licorice, Glycyrrhiza lepidota for the first time to investigate their phylogenetic relationship among inverted-repeat-lacking clade (IRLC) legumes. The total length of the chloroplast genome is 127,939 bp, with 34.2% overall GC content. The chloroplast genome harbors 110 known genes, including 76 protein-coding genes, four ribosomal RNA genes, and 30 tRNA genes. Similar to other closely related plastomes, rpl22 and rps16 are absent. A total of 464 cp microsatellites (cpSSRs) were analyzed in the G. lepidota. The majority of the SSRs in this cp genome are penta-nucleotides (61.6%). Locally collinear blocks (LCBs) identified between the Glycyrrhiza glabra and G. lepidota cp genomes were showed that they were well conserved with respect to gene organization and order. Moreover, the phylogenetic analysis indicates that G. lepidota is closely related to its confamilial counterparts than to the other taxa of the IRLC legumes.     

High-throughput detection of antioxidants in mulberry fruit using correlations between high-resolution mass and activity profiles of chromatographic fractions

Background

Plant extracts contain a huge variety of pharmacologically active substances. Conventionally, various chromatographic methods must be applied several times to purify functional compounds to measure their functional activity. However, conventional purification methods are time-consuming and expensive due to the laborious purification process. Recently, a high-throughput discovery method that replaces such time-consuming purification processes was introduced; this method uses 15 T ultra-high-resolution Fourier transform ion cyclotron resonance mass spectrometry (15 T FT-ICR MS) and a high-throughput screening method. This 15 T FT-ICR MS provides unparalleled resolution and sub-ppm accuracy in mass measurements, while simultaneously detecting multiple compounds without separation. The high-throughput, simultaneous multi-component discovery method known as Scaling of Correlations between Activity and Mass Profiles (SCAMP) was used to detect functional compounds in a plant extract. We validated the performance of SCAMP using 33 fractions from antioxidant-rich mulberry ethyl acetate extract and known standard antioxidants.

Results

The mulberry fruit was first separated into 33 fractions by LC and analyzed using high-resolution mass spectrometry. The antioxidative strength of the 33 fractions and standard antioxidants was measured. To validate the efficiency of this antioxidant discovery method, correlations between the antioxidation activity profile and changes in mass intensity of components within the 33 fractions were calculated to provide relative scores for the antioxidant candidate list. Enrichment curves and area under the curve (AUC) values were then calculated to compare the performance of the methods. Using this improved scoring method, five strong antioxidants, chlorogenic acid (14.2 ng), dihydoxy quercetin (46.2 ng), rutin (154.0 ng), quercetin (71.7 ng) and luteolin (3.5 ng) in 2 kg mulberry fruit, were found within the top 20 candidates.

Conclusions

We calculated AUCs in order to compare scoring methods quantitatively. Scoring systems were compared and calculated AUCs, where the AUCs for new scoring systems (0.98 and 0.99) were higher than the previously used correlation coefficient (AUC = 0.89). Using the new scoring algorithms, we successfully enriched thirteen unknown strong antioxidant candidates in addition to known antioxidants, methyl syringin and naringenin (3.5 ng) in mulberry extract. Targeted purification of these unknown candidates will significantly reduce purification time and labor.

     

Benthic nutrient fluxes at longline sea squirt and oyster aquaculture farms and their role in coastal ecosystems

To assess the impact of aquaculture activities, we measured the primary production, total sediment oxygen consumption, and benthic nutrient flux at two aquaculture farms (sea squirt and oyster) and one reference site. The estimated primary production in the water column ranged from 19–169 mmol C m⁻² d⁻¹. Total sediment oxygen consumption rates ranged from 58 to 328 mmol m⁻² d⁻¹, 1.1 to 40 mmol m⁻² d⁻¹ for nitrogen, 0.17 to 3.0 mmol m⁻² d⁻¹ for phosphate, and 7.3 to 74 mmol m⁻² d⁻¹ for silicate. The average total sediment oxygen consumption at the longline farms was >2.5 times higher than the reference site. Nitrate was significantly removed by denitrification at the longline farms in July and September and ranged from −5.4 to −0.09 mmol m⁻² d⁻¹, which is higher than for other coastal sediments. The benthic fluxes of nitrogen and phosphate at longline farms were up to 16 and six times higher than at the reference site, respectively. The average nitrogen requirements of the primary producers were 9.3 mmol m⁻² d⁻¹ at the sea squirt farm, 7.0 mmol m⁻² d⁻¹ at the oyster farm, and 13.5 mmol m⁻² d⁻¹ at the reference site, corresponding to 88, 316, and 27.2% of the nitrogen supplied by benthic fluxes, respectively. Our results suggest that benthic nutrient fluxes at longline farms are a major nutrient source for primary production in coastal waters.     

Effects of Dietary Supplementation of Black Soldier Fly (Hermetia illucens) Larvae Oil on Broiler Health

Insects are a potential source of proteins and fats which can be incorporated into diets of broiler chickens. Accordingly, black soldier fly larvae oil (BSFLO) needs to be tested as an appropriate fat source to produce healthy chickens for consumers. Therefore, the objective of the present study was to evaluate the effects of the replacement of soybean oil (SBO) with BSFLO in broiler diets on intestinal health and blood profiles. A total of 210 one-day-old male broilers were randomly allocated to three dietary treatments (10 replicates of seven birds per group): a control diet and two experimental diets in which SBO was replaced with 50% (50 BSFLO) or 100% (100 BSFLO) BSFLO. At the end of the study (35 days), 18 birds (six broilers per treatment) were slaughtered to determine the intestinal morphology, digestibility, and volatile fatty acid (VFA) profile. Blood samples were collected from 24 randomly selected birds (eight broilers per treatment) to determine the blood profiles. BSFLO supplementation positively affected villus height but did not affect digestibility. BSFLO showed no adverse effects on the VFA and blood profiles. In conclusion, the results of this study suggest that SBO can be replaced by BSFLO without any adverse effects on broiler health.     

Effects of surface laminate type and recycled fiber content on properties of three-layer medium density fiberboard

ABSTRACT

High global production of medium-density fiberboard (MDF) in recent years could generate an equal quantity of waste MDF at the end of its service life, requiring recycling of waste MDF instead of landfilling or incineration. This study investigated effects of the addition of recycled fiber (RF) obtained from surface laminated MDFs with three different materials to the properties of three-layer recycled MDF (rMDF). Three types of surface laminates such as low-pressure laminate, polyethylene terephthalate, and polyester coating were hammer milled, and then went through a patent-pending fiber recovery system to obtain the resultant RFs that were added to the core layer of rMDF. These RFs at three contents (10, 20, and 30%) were blended with 12% of urea-formaldehyde (UF) resin prior to hot-pressing. Statistical analysis showed that the best internal bonding strength, modulus of rupture, and modulus of elasticity of rMDF panels were obtained for LPL-rMDF with a 20% RF content. Thickness swelling, water absorption, and formaldehyde emission of rMDF were reduced by increasing the RF content. These findings suggest that a minimum RF content of 20% can be replaced with virgin fibers for the rMDF manufacture, indicating the feasibility of recycling waste laminated MDF into three-layer rMDF.     

Genotypic and phenotypic characterization of Edwardsiella isolates from different fish species and geographical areas in Asia: Implications for vaccine development

The genus Edwardsiella is one of the major causes of fish diseases globally. Herein, we examined 37 isolates from ten different fish species from India, South Korea and Taiwan to gain insight into their phenotypic and genotypic properties, of which 30 were characterized as E. tarda with phenotypic homology estimated at 85.71% based on API‐20E biochemical tests. Genotyping using 16S rRNA put all isolates together with E. anguillarum, E. hoshinae, E. tarda, E. piscicida and E. ictaluri reference strains in a monophyletic group. In contrast, the gyrB phylogenetic tree clearly separated E. ictaluri, E. tarda and E. hoshinae reference strains from our isolates and put our isolates into two groups with group I being homologous with the E. anguillarum reference strain while group II was homologous with the E. piscicida reference strain. Hence, our findings point to E. piscicida and E. anguillarum as species infecting different fish species in Asia. Homology of the ompW protein suggested that strains with broad protective coverage could be identified as vaccine candidates. This study underscores the importance of combining genotyping with phenotyping for valid species classification. In addition, it accentuates the importance of phylogenetic comparison of bacterial antigens for identification of potential vaccine candidates.