Intrinsic Biodegradation of Heavy Oil from Nakhodka and the Effect of Exogenous Fertilization at a Coastal Area of the Sea of Japan

We performed a field experiment in thebiodegradation of heavy oil spilled from the Russian tankerNakhodka on a beach in the Sea of Japan. We collectedoil-contaminated cobbles and treated half with nitrogen andphosphorus slow-release fertilizers to stimulate microbialdegradation of the oil; the other half acted as unfertilizedcontrols. The cobbles were placed in porous acrylic vessels andsubmerged. We monitored changes in the oils, macronutrients,microbial community structure and amount of chlorophyll a. There were no significant differences in these criteriabetween the fertilized and unfertilized vessels, apart from anincrease in chlorophyll a in the fertilized vessels.However, there was a major intrinsic degradation of semi-volatile oil compounds in the unfertilized vessels; this occurred at a rate similar to that in the fertilized vessels, despite the low concentration of macronutrients in the seawater at the site.     

Dicalcium phosphate reaction with soils during 2N ammonium sulfate extraction

The consistent method for fractionation of soil phosphorus has already been recommended by M.L. Jackson et al. (1,2,3) based on the solubility product of different soil phosphates, and being widely applied for soil research and practice. Lately, some criticism of the method arose as to the probability of dissolution in 0.5 M ammonium fluoride solution of freshly formed dicalcium phosphate and other reaction products of fertilizer recently added to soil. Since dicalcium phosphate is of nature soluble in ammonium fluoride, as well as aluminium phosphate, if dicalcium phosphate was contained in appreciable amount in soil, so that the value of aluminum phosphate to be dissolved into ammonium fluoride must become higher beyond the real value. It is, therefore, significant to know the fate of applied phosphate fertilizer and the status of native labile phosphate.     

Analysis of the promoter of mutated human whey acidic protein (WAP) gene

Although whey acidic protein (WAP) has been identified in the milk of a range of species, it has been predicted that WAP is not secreted into human milk as a result of critical point mutations within the coding region. In the present study, we first investigated computationally the promoter region of mutated human WAP genes by comparing with those of other known WAP genes. Computational database analyses showed that the human WAP promoter region was highly conserved, as in other species with milk WAP. Next, we evaluated the activity of the human WAP promoter (2.6 kb) using a reporter gene assay. MCF-7 cells were stably transfected with the hWAP/hGH (human growth hormone) fusion gene, cultured on Matrigel, and treated with lactogenic hormones. Radioimmunoassay detected hGH in the culture medium, indicating that the human WAP promoter was responsible for the lactogenic hormones. The human WAP promoter was significantly more active in MCF-7 cells than the mouse WAP promoter (2.4 kb). The present results provide us with important information on the molecular evolution of milk protein genes.     

A simple and efficient method for extraction of PCR-amplifiable DNA from chicken eggshells

Recently, we reported a method for discriminating a Japanese brand of chicken, the Hinai-jidori. As an application of this method for discriminating Hinai-jidori eggs, we here report an efficient method for extracting maternal DNA from eggshells. Eggshell powder was completely decalcified with EDTA solution, and then DNA was isolated by conventional phenol-chloroform extraction and ethanol precipitation. The efficiency of DNA recovery from eggshells was 50-fold higher than that of a previously reported method. The recovered DNA could be used for PCR, and 10 markers for identifying the Hinai-jidori chicken were detected. The genotypes of the Hinai-jidori exactly matched those of the Hinai-dori breed. Using this method, Hinai-jidori and Hinai-dori eggs could be distinguished from the eggs of Rhode Island Reds. This is the first report of a technique that can be used to discriminate the eggs of Hinai-jidori from those of other chickens, and it can also be utilized to validate the labeling of Hinai-jidori eggs in the market.     

Use of fluorescent proteins to visualize interactions between the Bakanae disease pathogen <Emphasis Type="Italic">Gibberella fujikuroi</Emphasis> and the biocontrol agent <Emphasis Type="Italic">Talaromyces</Emphasis> sp. KNB-422

Talaromyces sp. isolate KNB-422, isolated from a rice seedling, is a biofungicidal agent effective against several seedborne pathogens of rice including Gibberella fujikuroi, which causes Bakanae disease. Because the fungal mode of action (MOA) has not yet been clarified, we used the fluorescent protein markers GFP and RFP to visualize cell–cell interactions between the biocontrol agent and the pathogen G. fujikuroi. In slide culture, the hyphal cell wall of G. fujikuroi collapsed, and fluorescence of its cytoplasm disappeared 3 days after contact with hyphae of Talaromyces sp. On inoculated rice plants, both fungi occupied the same regions of coleoptiles and roots, where the biocontrol effect of Talaromyces sp. must be exerted. Our observations suggest that the MOA of Talaromyces sp. is mycoparasitic.     

Enhancement of callose production by a combination of aluminum and iron in suspension-cultured tobacco (Nicotiana tabacum) cells

In nutrient medium, aluminum (A1) enhances ferrous ion [Fe(II)] -mediated per oxidation of lipids, which results in the loss of the plasma membrane integrity and the accumulation of A1 in tobacco cells. Under these conditions, the mechanism of callose production and possible involvement of callose in the accumulation of Al were investigated. Callose production was enhanced by both Al and Fe(II), but not by A1 or Fe(II) alone, and the enhancement was inhibited by a lipophilic antioxidant, suggesting that the enhancement of callose production is caused by the A1-enhanced, Fe(II)-mediated peroxidation of lipids. The enhancement of callose production depended on the presence of external Ca²⁺ in the treatment medium. The activity of β-l,3-glucan synthase in the microsomes was increased several times by the addition of Ca²⁺ in the assay medium, although the activity in the microsomes was reduced by the treatment of cells with Al and Fe(II) together. Therefore, it is likely that callose production is enhanced by exogenous Ca²⁺ via the AI-enhanced, Fe(II)-mediated peroxidation of lipids. During the exposure of the cells to Al and Fe(II), callose production started and increased simultaneously with Al accumulation. However, the digestion of callose in the cell wall materials prepared from the A1-treated cells by laminarinase did not release A1, suggesting that callose is not involved in the binding or trapping of A1.     

Gross nitrification rates in four Japanese forest soils: heterotrophic versus autotrophic and the regulation factors for the nitrification

Measurements of gross NH ₄ ⁺ and NO ₃ ^? production in forest soils were conducted using the ¹⁵N pool dilution method. Mineral topsoils (0?C10?cm depth) were collected from four forests from northern to southern Japan with a natural climate gradient to elucidate the mechanisms regulating gross nitrification rates in forest soils. Additionally, we attempted to evaluate the relative importance of heterotrophic nitrification in gross total nitrification using acetylene as a specific inhibitor of autotrophic nitrification. Distinct differences were found among sites in the gross rates of NH ₄ ⁺ production (3.1?C11.4?mg?N?kg^?1?day^?1) and gross total nitrification (0.0?C6.1?mg?N?kg^?1?day^?1). The rates of gross heterotrophic nitrification were low in this study, indicating that heterotrophic nitrification is of minor importance in most forest mineral topsoils in Japan. Significant relations were found between gross autotrophic nitrification and gross NH ₄ ⁺ production, soil N, and soil C concentrations, but none was found between gross autotrophic nitrification and soil pH. We determined the critical value of the gross NH ₄ ⁺ production rates for gross autotrophic nitrification under which no gross autotrophic nitrification occurred, as well as the critical soil C/N ratio above which gross autotrophic nitrification ceased. Results show that tight coupling of production and consumption of NH ₄ ⁺ prevents autotrophic nitrifiers from utilizing NH ₄ ⁺ as long as NH ₄ ⁺ availability is low.     

Chemical Characteristics in Stemflow of Japanese Cedar in Japan

To clarify the characteristics in stemflow of Japanese cedar (Cryptomeria japonica), we conducted the annual and extensive observation. We examined the chemistry of bulk and wet deposition, throughfall and stemflow at 26 forested sites in June and September 1998. The each sampling site was broadly distributed in all over the Japanese archipelago. The stemflow pH of Japanese cedar was significantly lower (p<0.01) than precipitation and stemflow of broad-leaved species in both months. There were significant anion deficits in stemflow of Japanese cedar, suggesting that organic anions derived from plant sources play an important role in the stemflow acidity. Our results suggested that the strong stemflow acidity in Japanese cedar was derived from an internal biological characteristic rather than influences of external acidic deposition.