Bayesian mapping of quantitative trait loci (QTL) controlling soybean cyst nematode resistant

The soybean cyst nematode (SCN) is one of the most economically important pathogens of soybean. Molecular mapping of quantitative trait loci (QTL) for resistance to SCN is a proven useful strategy in order to assist in the development of resistant soybean cultivars. In the present study, a Bayesian modeling approach was performed to map QTL controlling genetic resistance to SCN races 3 and 14. For this purpose, a population of recombinant inbred lines derived from the cross between line Y23 (susceptible) and cv. Hartwig (resistant) was used. A total of 144 microsatellites markers (Simple Sequence Repeats) were selected and synthesized for mapping purpose. Posterior marginal parameter distributions were computed using the Reversible Jump Markov Chain Monte Carlo (RJ-MCMC) algorithm. It was determined the existence of four QTLs on three linkage groups (LG); that is LG A2 for race 3, LG C2 for race 14, and LG G for both races. The estimates of posterior modes of the heritability were 0.038 and 0.53 for the LGs A2 and G respectively (race 3). For the race 14 the posterior modes of the heritability were 0.044 and 0.05 for the LGs C2 and G. The identified QTLs explained about 57 and 9 % of the total phenotypic variance, for the races 3 and 14, respectively. These results confirm the effectiveness of the Bayesian method to map QTL controlling resistance to SCN in soybean. Accordingly, integrating QTL mapping with Bayesian methods will enable response to selection for quantitative traits of interest in soybean to be improved.     

Reference limits for biochemical and hematological analytes of dairy cows one week before and one week after parturition

Since dairy cows during the transition period have multiple endocrine and metabolic changes, it is necessary to determine the reference limits of laboratory analytes in normal transition cows. Reference limits for the weeks before and after calving were determined in dairy cows. Animals that had adverse clinical outcomes after calving and cows that were culled or had mastitis within the first 7 days after calving were excluded. All biochemical analytes (β-hydroxybutyrate, fatty acids, glucose, cholesterol, urea, calcium, and phosphorus) were statistically different between precalving and postcalving groups. The hematological analytes were not significantly different except for eosinophils. The data from precalving and postcalving cows were significantly different from reference limits in a university-associated laboratory derived from early- and mid-lactation cows. Different reference limits for precalving and postcalving dairy cows should be determined for biochemical analytes to ensure appropriate interpretation of results.     

Developing a platform for genomic medicine in Mexico

Mexico is preparing to develop a genomic medicine program focused on national health problems. Modern Mexicans result from an admixture of more than 65 native Indian groups with Spaniards, leading to a unique genetic makeup and a characteristic set of disease susceptibilities. Since 1999, more than 100 experts from different fields have joined efforts with government, academia, and industry to identify priorities and goals for genomic medicine in Mexico. The plan includes establishment of an Institute of Genomic Medicine with strong intramural and extramural programs. This project is expected to ease the social and financial burden of health problems in Mexico.     

Whole-tree water balance and indicators for short-term drought stress in non-bearing ‘Barnea’ olives

Drainage-weighing lysimeters allowed monitoring of water balance components of non-bearing olive (Olea europaea cv Barnea) trees over a 3-month period including short-term events of controlled but severe water stress. The objective of the study was to evaluate a variety of soil and plant-based water status and drought stress monitoring methods on the basis of tree-scale evapotranspiration (ET). As the trees entered into and recovered from water stress, meteorological data, actual ET (ET_a), soil water content and changes in leaf turgor pressure were continuously monitored. Additionally, midday measurements of stem water potential, stomatal conductance, canopy temperature, and quantum yield of PSII photochemistry were conducted. Diurnal (dawn to dusk) measurements of all the above were made hourly on days of maximum stress. Shoot elongation rate was measured for periods of stress and recovery. Quantum yield of PSII photochemistry, stomatal conductance, and stem water potential all successfully indicated reductions in whole-tree water consumption beginning at moderate stress levels. These measured parameters fully recovered to the levels of non-stressed trees soon after water application was renewed. Shoot elongation was reduced 25-30% for the 10-day period during and following drought and recovered thereafter to levels of non-stressed trees. Whole-tree ET_a was reduced by as much as 20% even following full recovery of the leaf level parameters, suggesting reduced canopy size and growth due to the stress period. Non-destructive, continuous (turgor pressure) and remotely sensed (canopy temperature) methods showed promising potential for monitoring effects of water stress, in spite of technological and data interpretation challenges requiring further attention.     

Drosophila suzukii (Diptera: Drosophilidae) distribution modelling improves our understanding of pest range limits

Abstract

Spatial distributions models (SDM) are often used in invasive pest management to understand current and potential distribution. Using data on the well-studied spotted wing drosophila as a model, we compared distribution patterns of the range-limit with commonly applied correlative and mechanistic models. Correlative models risk underestimation whereas simple mechanistic models provide overestimated range predictions, although using both approaches for the spotted wing drosophila improved range-limit predictions. Model choice when dealing with pests is central to the accurate identification of invasive species limit range and consequently for the deployment of monitoring and early detection programs.     

Output of gastrointestinal nematode eggs in the feces of captive gazelles (Gazella dama mhorr, Gazella cuvieri and Gazella dorcas neglecta) in a semiarid region of southeastern Spain.

Feces from 62 captive African gazelles, including Mhorr gazelles (Gazella dama mhorr), Cuvier's gazelles (Gazella cuvieri), and Dorcas gazelles (Gazella dorcas neglecta), were examined over the course of a year to quantitate nematode egg excretion patterns. Strongyloides sp. eggs appeared only in G. dama during the rainy season. Trichostrongylidae egg excretion showed a marked seasonal variation, with very low levels during the dry and hot period, a finding that is probably attributable to hypobiosis of the predominant species (Camelostrongylus mentulatus). Eggs of the Nematodirus sp., predominantly Nematodirus spathiger, were excreted throughout the year. No seasonal pattern was observed in Trichuris sp. egg excretion.     

Wheat and barley cultivars show plant traits acclimation and increase grain yield under simulated shade in Mediterranean conditions

Agroforestry systems are reported as climate‐resilient productive systems, but it is yet unclear how tree shade affects crops performance. The aim of this work was to assess how the phenology, plant traits and grain yield of wheat and barley were affected by shade. In an open greenhouse experiment, we cultivated in pots nine cultivars differing in precocity for each species and imposed three artificial shading levels (S0 ~ 0%, S1 ~ 25%, S2 ~ 50%) at the start of cereal booting. Our results showed that shade speeded up first growth stages in both species, until the starting of milk development. Barley showed consistent phenological responses to the three irradiance levels among cultivars, but not wheat that showed larger phenological differences among cultivars at moderate shade. Deep shade prolonged the time needed for wheat grain ripening. Both species increased grain yield by 15%–20% with shade, driven by shade‐acclimations of plant traits that differed among species. For wheat, grain yield was determined by the assemblage of traits that contribute to yield, such as grain weight, precocity and non‐photochemical quenching, while, for barley, SPAD value, precocity to reach phenological stages, grains per spike and plant height had the strongest influence. These traits varied widely among cultivars and seem of interest to identify best suited cultivars for shading conditions of Mediterranean agroforestry systems.     

Mammal population losses and the extinction crisis

The disappearance of populations is a prelude to species extinction. No geographically explicit estimates have been made of current population losses of major indicator taxa. Here we compare historic and present distributions of 173 declining mammal species from six continents. These species have collectively lost over 50% of their historic range area, mostly where human activities are intensive. This implies a serious loss of ecosystem services and goods. It also signals a substantial threat to species diversity.     

Coastal ecosystem-based management with nonlinear ecological functions and values

A common assumption is that ecosystem services respond linearly to changes in habitat size. This assumption leads frequently to an "all or none" choice of either preserving coastal habitats or converting them to human use. However, our survey of wave attenuation data from field studies of mangroves, salt marshes, seagrass beds, nearshore coral reefs, and sand dunes reveals that these relationships are rarely linear. By incorporating nonlinear wave attenuation in estimating coastal protection values of mangroves in Thailand, we show that the optimal land use option may instead be the integration of development and conservation consistent with ecosystem-based management goals. This result suggests that reconciling competing demands on coastal habitats should not always result in stark preservation-versus-conversion choices.     

Sustainability of regulated deficit irrigation in a mid-maturing peach cultivar

The level of irrigation restriction to apply in a deficit irrigation (DI) programme for sustainable peach (‘Baby gold 6’) production was investigated. The experiment involved four irrigation treatments over five consecutive seasons (2007–2011). They were full irrigation (control), reducing irrigation by 20 % during the first half of stage III (DI-80 %), withholding irrigation until reaching a light stress level (DI-L) and withholding irrigation until reaching a moderate stress level (DI-M). The withholding of irrigation in both DI-L and DI-M was applied only during stage II and postharvest periods and was based on midday stem water potential thresholds (Ψ _stem). For the DI-L treatment ?1.5 MPa was used in both periods, and for DI-M ?1.8 and ?2.0 MPa were used during stage II and postharvest, respectively. Average Ψ _stem values during DI periods were approximately ?1.4 and ?1.2 MPa for DI-M and DI-L, respectively. The pre-defined thresholds required to trigger irrigation were rarely reached. No significant differences between treatments were found in terms of yield in any experimental year. However, DI-M and to a lesser extent DI-L had lower final fruit fresh mass at harvest related to lower Ψ _stem after three consecutive years of the experiment (during 2010 and 2011). Therefore, in terms of fruit size, DI was not sustainable. Rather than lowering Ψ _stem thresholds, we recommend discontinuing DI after 3-year application.