Composite Likelihood Inference for Multivariate Gaussian Random Fields

In the recent years, there has been a growing interest in proposing covariance models for multivariate Gaussian random fields. Some of these covariance models are very flexible and can capture both the marginal and the cross-spatial dependence of the components of the associated multivariate Gaussian random field. However, effective estimation methods for these models are somehow unexplored. Maximum likelihood is certainly a useful tool, but it is impractical in all the circumstances where the number of observations is very large. In this work, we consider two possible approaches based on composite likelihood for multivariate covariance model estimation. We illustrate, through simulation experiments, that our methods offer a good balance between statistical efficiency and computational complexity. Asymptotic properties of the proposed estimators are assessed under increasing domain asymptotics. Finally, we apply the method for the analysis of a bivariate dataset on chlorophyll concentration and sea surface temperature in the Chilean coast.     

Effect of biochar on nutrient retention and nectarine tree performance: A three‐year field trial

We performed a series of experiments in controlled conditions to assess the potential of hardwood‐derived biochar either as a source or as a removing additive of macronutrients [nitrate‐nitrogen (NO₃‐N), ammonium‐N (NH₄‐N), potassium (K), phosphorus (P), and magnesium (Mg)] in solution. In addition, a 3‐year field trial was carried out in a commercial nectarine orchard to evaluate the effect of increasing soil‐applied biochar rates on tree nutritional status, yield, fruit quality, soil pH, soil NO₃‐N, and NH₄‐N concentration and soil water content. In controlled conditions, the concentrations of K, P, Mg, and NH₄‐N in solution were significantly increased and positively correlated with biochar rates. Biochar was ineffective in removing NO₃‐N, K, P, and Mg from enriched solutions, while at the rate of 40 g L^?1 biochar removed almost 52% of the initial NH₄‐N concentration. In a mature, irrigated, fertilized, commercial nectarine orchard (Big Top/GF677) on a sandy‐loam soil in the Italian Po Valley, soil‐applied biochar at the rates of 5, 15, and 30 t ha^?1 were effective in reducing the leached amount of NH₄‐N in the top 0.25 m soil layer over 13 months, as estimated by ion exchange resin lysimeters. Nevertheless, independent of the rate, biochar did not affect soil pH, soil N mineral availability, soil moisture, tree nutritional status, yield, and fruit quality. We conclude that, unless an evident constraint is identified, in non‐limiting conditions (e.g., water availability and soil fertility), potential benefits from biochar application in commercial orchards are hidden or negligible.     

Comparison of enzyme-linked immunosorbent assay and RT-PCR for the detection of porcine epidemic diarrhoea virus

Porcine epidemic diarrhoea (PED) is a contagious enteric disease of pigs caused by a coronavirus. A double antibody sandwich enzyme-linked immunosorbent assay (DAS-ELISA) based on the use of monoclonal antibodies was developed for the detection of porcine epidemic diarrhoea virus (PEDV). The DAS-ELISA was compared with RT-PCR in the examination of 506 specimens collected during 2006-2007 from pigs originating from different farms located in the Po valley. Both faecal samples obtained directly from the rectum of live animals showing clinical signs and intestinal samples collected from the caecum of deceased pigs were included in the study. The correlation between the two methods was higher when testing faecal samples (K = 0.97, 95% CI: 0.94-1.00) than testing intestinal samples (K = 0.62, 95% CI: 0.35-0.89). The use of ELISA technology provided an efficient and effective mean of evaluating the presence of coronavirus PED antigen in field samples and indicates that this procedure is a very useful tool in epidemiological studies.     

微粉化（细磨）豆粕和全脂大豆对肉鸡氨基酸回肠消化率的影响（文摘）

试验旨在研究微粉化（细磨）豆粕（SBM）和全脂大豆（FFSB）对23日龄肉鸡氨基酸的表观回肠消化率系数（CIAD）和真消化率系数（CITD）的影响。试验采用完全随机区组设计,按饲粮分为4个处理组,即微粉化SBM组、微粉化FFSB组、粗糙SBM组、粗糙FFSB组,每个处理组设6个重复,每个重复8只。微粉化SBM和FFSB的平均粒径（MPS）分别为47和41μm,而粗糙SBM和FFSB的平均粒径分别为881和778μm。     

Antimicrobial susceptibility of clinical strains of Streptococcus suis isolated from pigs in Spain

The antimicrobial susceptibility of 151 clinical Streptococcus suis strains isolated from diseased pigs in Spain was determined by a microdilution method. Isolates were mostly susceptible to beta-lactam antimicrobials, aminoglycosides, enrofloxacin, novobiocin and spectinomycin. More than 87% of the S. suis isolates were resistant to tetracyclines, sulphonamides, macrolides and clindamycin. Strains of serotype 9 were significantly more resistant than strains of serotype 2 (P<0.05) to tylosin (94% versus 77%) and clindamycin (94% versus 64%). Eighty-seven percent of the S. suis isolates were resistant to at least four antimicrobials and nine isolates (6%) were resistant to at least six antimicrobials. The most frequently identified multidrug pattern involved resistance against tetracyclines, sulphonamides, macrolides and lincosamides, with 69% of the isolates exhibiting this resistotype. Fifteen out of the 22 strains of serotype 2 (68.2%), and 84 out of the 98 of the strains of serotype 9 (85.7%) exhibited this resistotype, indicating its widespread distribution among the strains of the two most frequently isolated serotypes.     

Local and systemic immune responses to Echinococcus granulosus in experimentally infected dogs

Local and systemic immune responses were studied in six dogs experimentally infected with the dog/sheep tapeworm Echinococcus granulosus. All dogs developed similar IgG antibody response to parasite antigens. In contrast, IgE and IgA responses differed widely. No relationship between IgA responses and parasite burden at the end of the infection were observed. Further, clear differences in the anti-parasite IgA response in serum as compared with specific IgA forming cells in mesenteric lymph nodes were observed within the same dog. An inverse association of anti-parasite IgE and parasite load seemed to be present, with the strongest IgE response in the one dog that had no worms in the intestine at the end of the experiment. No differences were observed in the numbers of intestinal mast cells and goblet cells among all infected dogs. However, the dog with no detectable parasite load had a marked reduction of detected mast cells in the submuscular and muscular layer of the mucosa. Our data give new insight into the immune response of dogs during E. granulosus infection and provide information that may be useful for the rational design of vaccines for the control of hydatid disease.     

Histochemical skeletal muscle fibre types in the sheep

In this study, the differentiation of adult and postnatal muscle fibres in sheep longissimus thoracis muscle has been characterized. By using a variety of histochemical methods, we have investigated the m-ATPase and metabolic activities of skeletal muscle fibres in adult sheep and lambs aged between 1 day and 3 months. Types I, IIA, IIB and IIC fibres were identified. The results showed that the interpretation of the fibre type composition depends on the methods used. The findings also revealed that the fibre types IIA and IIB can be separated histochemically in sheep by using the correct m-ATPase technique, even at early stages of postnatal development, and that the origin of the four different fibres of the adult can be traced back to early postnatal stages.     

Detection of Citrus Leaf Blotch Virus Using Digoxigenin-Labeled cDNA Probes and RT–PCR

Citrus leaf blotch virus (CLBV) was detected by dot-blot hybridization (DBH), and tissue print hybridization (TPH) and by one-step RT–PCR in citrus plants growing both in the greenhouse and in the field. DBH with digoxigenin-labeled cDNA probes allowed CLBV detection in dsRNA-rich and total RNA preparations equivalent to 5 and 0.1mg of infected tissue, respectively. DBH gave intense signals with RNA extracts from young bark, tender shoots and young leaves, whereas the best hybridization signals with TPH were obtained using tender shoots and young leaf petioles. One-step RT–PCR was 10-fold more sensitive than DBH and amplification was obtained with all infected tissues. CLBV was readily detected in young leaves of infected Eureka lemon, Marsh grapefruit, Nules clementine, Navelina orange and Nagami kumquat in the greenhouse, using either hybridization or RT–PCR, but not in leaves of Pineapple sweet orange. Detection in field trees was less consistent and was only achieved by RT–PCR and DBH. CLBV was detected by DBH and RT–PCR in different citrus varieties from several geographic areas showing bud union crease on trifoliate rootstocks, but not in neighbor trees with the same symptoms or in other varieties showing bud union crease on those rootstocks. Failure to detect CLBV in trees with bud union crease could be due to low virus titer or uneven distribution within the plant. Alternatively, a different agent could be involved in causing bud union crease.     

Nitric oxide synthase expression in the endothelium of pulmonary arterioles in normal and pulmonary hypertensive chickens subjected to chronic hypobaric hypoxia

To determine whether or not exposure to chronic hypoxia and subsequent development of pulmonary hypertension syndrome (PHS) induce alterations in endothelial nitric oxide (NO) production in broiler's pulmonary vascular bed of broilers, we studied the expression of nitric oxide synthase enzyme in pulmonary endothelial cells by a nicotinamide adenine dinucleotide phosphate (NADPH)-diaphorase histochemical staining reaction. For this purpose, 60 broilers of three different ages (17, 30, and 42 days) were used. The animals were distributed in two groups: a) 30 healthy (nonhypertensive) broilers and b) 30 chicks with PHS. All broilers in group b had fewer NADPH-diaphorase-positive endothelial cells in arterioles than did the nonhypertensive broilers. These differences were highly significant (P < 0.01). These results demonstrate for, the first time in broilers, that hypoxia-induced pulmonary hypertension is associated with a decrease of endothelial-derived NO expression in pulmonary vessels.     

Brucellosis in Central America

Brucellosis is a disease of domestic animals and humans in Central America (CA). Bovine and swine brucellosis caused by Brucella abortus and Brucella suis, respectively, have been identified in all CA countries, while ovine and caprine brucellosis caused by Brucella melitensis has been detected in Guatemala. The prevalence of bovine brucellosis is estimated between 4 and 8%, with higher prevalence in dairy herds, with losses calculated at US$ 25 million per year. National Control Programs based in calf vaccination and removal of the reactors have had little impact in the control of brucellosis in CA. In a region where experimentation with new vaccines is not affordable, unrestricted adult vaccination by the conjunctival route with S19 is recommended. This strategy is expected to reduce the prevalence and density of the bacteria to numbers where “clean” vaccination would be possible. Thereafter, serological identification and elimination of the reactors could be initiated under more favorable conditions of herd infection.