Mobile terrestrial laser scanner applications in precision fruticulture/horticulture and tools to extract information from canopy point clouds

LiDAR sensors are widely used in many areas and, in recent years, that includes agricultural tasks. In this work, a self-developed mobile terrestrial laser scanner based on a 2D light detection and ranging (LiDAR) sensor was used to scan an intensive olive orchard, and different algorithms were developed to estimate canopy volume. Canopy volume estimations derived from LiDAR sensor readings were compared to conventional estimations used in fruticulture/horticulture research and the results prove that they are equivalent with coefficients of correlation ranging from r = 0.56 to r = 0.82 depending on the algorithms used. Additionally, tools related to analysis of point cloud data from the LiDAR-based system are proposed to extract further geometrical and structural information from tree row crop canopies to be offered to farmers and technical advisors as digital raster maps. Having high spatial resolution information on canopy geometry (i.e., height, width and volume) and on canopy structure (i.e., light penetrability, leafiness and porosity) may result in better orchard management decisions. Easily obtainable, reliable information on canopy geometry and structure may favour the development of decision support systems either for irrigation, fertilization or canopy management, as well as for variable rate application of agricultural inputs in the framework of precision fruticulture/horticulture.     

Ecological and histopathological aspects of Didymodiclinus sp. (Trematoda: Didymozoidae) parasite of the dusky grouper,Epinephelus marginatus (Osteichthyes: Serranidae), from the western Mediterranean Sea

The dusky grouper Epinephelus marginatus (Lowe) is an ecologically and commercially important fish species of the Atlantic and Mediterranean coastal rocky habitats. Despite records of didymozoid infections in several grouper species, the identification and pathogenesis of these parasites in E. marginatus are lacking. The aim of this study is to characterize the didymozoids of E. marginatus, particularly their mechanisms of infection and histopathological features. Dusky groupers (n = 205) were caught off Majorca Island (western Mediterranean Sea) and examined for parasites. Of the fish sampled, 45% were infected with white and yellow didymozoid capsules and brown nodules, found on the gills and pseudobranchs. Parasite abundance had a strong positive relationship with the fish length; only fish larger than 20 cm were infected, suggesting infection via consumption of an intermediate host, for which E. marginatus size was a limiting factor. The capsules contained two convoluted viable adult trematodes, identified as Didymodiclinus sp., in close contact with host capillary vessels, with no evidence of the tissue inflammatory response. Conversely, nodules containing degraded parasites were surrounded by an intense inflammatory infiltrate. The findings suggest that Didymodiclinus sp. have the potential to evade the host's immune system by inhibiting the inflammatory response.     

Influence of different dietary doses of n-3- or n-6-rich vegetable fats and alpha-tocopheryl acetate supplementation on raw and cooked rabbit meat composition and oxidative stability

This study evaluates the effects of replacing beef tallow added to rabbit feeds (3% w/w) by different doses (0%, 1.5% and 3% w/w) of n-6- or n-3-rich vegetable fat sources (sunflower and linseed oil, respectively) and alpha-tocopheryl acetate supplementation (0 and 100 mg/kg) on the fatty acid composition, alpha-tocopherol content, and oxidation levels [assessed by analyzing thiobarbituric acid (TBA) and lipid hydroperoxide values] in rabbit meat. We also measured these parameters after cooking and refrigerated storage of cooked rabbit meat. Both dietary alpha-tocopheryl acetate supplementation and the dose and source of fat added to feeds influenced meat fatty acid composition, modifying the n-6/n-3 ratio, which was more nutritionally favorable when linseed oil was used. Furthermore, the addition of linseed oil and the supplementation with alpha-tocopheryl acetate enhanced long-chain PUFA biosynthesis. However, the addition of 3% linseed oil increased meat oxidation, and although it was reduced by dietary supplementation with alpha-tocopheryl acetate in raw meat, this reduction was not as effective after cooking. Therefore, dietary supplementation with 1.5% linseed oil plus 1.5% beef tallow and with alpha-tocopheryl acetate would be recommended to improve the nutritional quality of rabbit meat.     

Dairy Cattle Manure Effects on Soil Quality: Porosity,Earthworms, Aggregates and Soil Organic Carbon Fractions

In the European Union, the maintenance of soil quality is a key point in agricultural policy. The effect of additions of dairy cattle (Bos taurus) manure (DCM) during a period of 11 years were evaluated in a soil under irrigated maize (Zea mays L.) monoculture. DCM was applied at sowing, at wet‐weight rates of 30 or 60 Mg ha⁻¹yr⁻¹ (30DCM or 60DCM). These were compared with a mineral‐N treatment (300 kg N ha⁻¹, MNF), applied at six to eight emerged leaves and with a control (no N, no manure). Treatments were distributed in a randomized block design. Factors analysed were stability against wetting stress disaggregation, porosity, soil organic carbon (SOC) fractions and earthworm abundance, studied eight months after the last manure application. The application rate of 30DCM increased aggregate stability and the light SOC fraction, but not the pore volume, nor the earthworm abundance, compared with MNF. The DCM rates did not result in unbalanced agronomic advantages versus MNF, as high yields (12–16 Mg ha⁻¹ yr⁻¹) were obtained. In Mediterranean environments, the use of DCM should be encouraged mainly because of its contribution to the light SOC fraction which protects dry macro‐aggregates from implosion (slaking) during the wetting process. Thus, in intensive agricultural systems, it protects soil from physical degradation. Copyright © 2016 John Wiley & Sons, Ltd.     

Patterns of species and functional diversity around a coastal marine reserve: a fisheries perspective

• 1. Marine protected areas (MPAs) are expected to function simultaneously as biological conservation and fisheries management tools, but empirical evidence linking biodiversity conservation with fisheries benefits is scarce. Around the Medes Islands marine reserve (Spain, NW Mediterranean) patterns of fish catch diversity, catch (CPUE) and income (IPUE) were assessed and the economic value of diversity for local fisheries was explored by combining a Geographic Information System (GIS) analysis with geostatistics.
• 2. Catch data were derived from the trammel net fleet operating around the MPA to gain information on species diversity, functional diversity, functional redundancy, CPUE and IPUE.
• 3. Results revealed significant impact of both the fishing prohibition in the MPA and the presence of seagrass beds on diversity metrics, catch and income. Clear differences in functional redundancy in fish assemblages were found within the study area, indicating greater resilience of the fish assemblage against fishing pressure or human impact close to the MPA (?2 km). In contrast, fish assemblages beyond 2 km of the MPA border are more vulnerable to disturbance. High values of diversity, CPUE and IPUE overlapped close to the MPA border and close to seagrass beds.
• 4. The spatial approach developed suggests that, in addition to the more commonly studied effect of density‐dependent spillover of adult fish, increased levels of ecological diversity and economic diversity can also result in fisheries benefits of an MPA. Hence, the fishing regulations in and around the Medes Islands marine reserve have shown that biological conservation and fisheries benefits can be complementary in the long‐term, which should be considered in future policies for MPAs or MPA networks.

Copyright © 2008 John Wiley & Sons, Ltd.     

Reduced crop sowing density improves performance of rare arable weed species more effectively than reduced fertilisation

Characteristic arable weed species of dryland cereal fields have undergone significant declines, due to agricultural intensification, to the point that some of them are considered rare. Crop edges host higher abundances of arable weed species, therefore they may act as a refuge for the conservation of these rare arable species. Using mesocosms, we experimentally tested how conditions at field edges (i.e. lower sowing densities and less intensive fertiliser applications) operate on the growth (biomass and height) and reproduction (reproductive biomass and flower onset) of six rare arable species. We found the rare arable species achieved lower biomass when growing with wheat compared with growing alone, and biomass of most of species was lower under high wheat sowing density than under low sowing density. In contrast, fertiliser application affected only two of the six arable species tested, especially when they were growing alone. Although the time to flowering was not affected by the conditions tested, reproductive biomass showed the same trends as overall biomass. These results indicate that conservation of rare arable species must primarily consider reductions in crop competition to increase their biomass and reproductive ability.     

Changes in the spawning habitat of two small pelagic fish in the Northwestern Mediterranean

We investigated the effects of three sea surface oceanographic variables (temperature, salinity, and chlorophyll a) on the abundance of eggs and larvae of two summer‐spawning species in the NW Mediterranean Sea, the anchovy Engraulis encrasicolus and the round sardinella Sardinella aurita, based on data from ichthyoplankton surveys carried out in the 1980s, 2000s, and 2010s. The environmental data showed an increase in seawater temperature and salinity along time, coupled with a decrease in chlorophyll a (proxy for primary production). These long‐term directional changes in environmental conditions helped explain the important reduction observed in the abundance of eggs and larvae of anchovy, as well as shrinking of spawning habitat in this species. At the same time, the probability of occurrence of round sardinella has increased from practically zero in the 1980s to probabilities near 1 along the coastal area of the study region in the two decades of the 21st century. Given that the trends observed in the environmental variables along the three decades of study are expected to continue during the 21st century, as a consequence of climate change, the spawning habitat of anchovy is expected to continue decreasing, while round sardinella habitat can expand. Considering that anchovy is of high commercial importance in NW Mediterranean fisheries, while round sardinella has very low commercial interest, our results show that the viability of small pelagic fisheries in the area may be compromised.     

A rapid spectral-reflectance-based fingerprinting approach for documenting suspended sediment sources during storm runoff events

Purpose  

This paper reports on the development of a rapid and simple spectra-reflectance-based fingerprinting approach for documenting suspended sediment sources during storm runoff events. The methodology was applied in the rural Wollefsbach catchment (4.4 km², NW Luxembourg).     

Interference competition in a threatened seabird community: A paradox for a successful conservation

It is often assumed that conservation actions targeting a threatened community (e.g. habitat protection) will result in similar benefits for all species. However, complex interactions between species, such as interference competition, may result in displacement of subordinate, vulnerable species. We analysed here the spatio-temporal population dynamics of a threatened seabird community since the protection in the 1980s of several breeding sites at the Ebro Delta, western Mediterranean, Spain during 1980-2007. Competition for the most suitable patches was governed by body size, with smaller species avoiding associations with larger, dominant species. We tested whether the density increase of the larger species (yellow-legged gull Larus michahellis and Audouin’s gull Larus audouinii) at La Banya (the highest quality patch within the Delta) affected species diversity at the local level. As expected, such diversity decreased, resulting also from the colonisation of other sites by smaller species, some abandoning the former area. The conservation paradox appeared because the interference competition was dominated not only by the largest species of the community, the yellow-legged gull, which is sometimes considered a pest species, but also by the vulnerable Audouin’s gull, a flagship species which has ca. 65% of the total world population at La Banya. Nevertheless, the availability of alternative patches within the Ebro Delta ensured a high biodiversity at regional scale. Results highlight the role of turnover of competing species within a community in ecosystem function and stability, and the importance of alternative sites and dispersal abilities for the conservation of vulnerable communities.     

Geostatistical methods to study spatial variability of soil cations after a prescribed fire and rainfall

Prescribed fire is a technique sometimes used in forest management but the effects on soil are not fully understood. Soil is a complex system and the spatial variability of properties and processes may increase after a disturbance like fire. We modelled three soil cations Ca²⁺, Mg²⁺ and K⁺ with probabilistic methods and geostatistics in order to assess the spatial effects of a prescribed fire within a plot (108 m²). Soil samples were collected during 6 different sampling campaigns (pre fire, post fire, 2 months, 5 months, 1 year, and 3 years after the prescribed fire). The sampling interval was designed to detect the effect of rainfall (1315 mm for the 3 years with 72 mm/h peak intensity) on the spatial soil changes as consequence of processes such as: leaching, soil erosion, etc. We developed an index of response to compare each cation after the prescribed fire with its pre-fire levels. Results showed that calcium and magnesium recover with time to their original concentrations. Potassium increase slightly in half of the plot just after fire; however, three years after fire the concentration was two orders of magnitude lower than the pre-fire state. The divalent cations (Ca²⁺ and Mg²⁺) were more homogeneous but the monovalent cation (K⁺) was more heterogeneous after the fire. Furthermore the maximum rainfall period triggered different spatial processes and the type of process was a function of the valence of the cation.