A motorized grinder for making soil thin sections

A small hand-held device is described which enables an operator to grind soil thin sections very rapidly as compared to conventional hand grinding. The apparatus is relatively inexpensive and easy to construct as it comprises only a simple motorized grinder and grit impregnated discs 2.5 cm in diameter.     

Leaf respiratory acclimation to climate: comparisons among boreal and temperate tree species along a latitudinal transect

In common gardens along an ～900 km latitudinal transect through Wisconsin and Illinois, U.S.A., tree species typical of boreal and temperate forests were compared with respect to the nature and magnitude of leaf respiratory acclimation to contrasting climates. The boreal representatives were trembling aspen (Populus tremuloides Michx.) and paper birch (Betula papyrifera Marsh.), while the temperate species were eastern cottonwood (Populus deltoides Bartr ex. Marsh var. deltoides) and sweetgum (Liquidambar styraciflua L.). Assessments were conducted on seedlings grown from seed sources collected near southern and northern range boundaries, respectively. Nighttime rates of leaf dark respiration (R(d)) at common temperatures, as well as R(d)'s short-term temperature sensitivity (energy of activation, E(o)), were assessed for all species and gardens twice during a growing season. Little evidence of R(d) thermal acclimation was observed, despite a 12 °C range in average air temperature across gardens. Instead, R(d) variation at warm temperatures was linked most closely with prior leaf photosynthetic performance, while R(d) variation at cooler temperatures was most strongly related to leaf nitrogen concentration. Moreover, E(o) differences across species and gardens appeared to stem from the somewhat independent limitations on warm versus cool R(d). Based on this construct, an empirical model relying on R(d) estimates from leaf photosynthesis and nitrogen concentration explained 55% of the observed E(o) variation.     

Determinants of annual fluxes of CO2 and N2O in long-term no-tillage and conventional tillage systems in northern France

The greenhouse gases CO₂ and N₂O emissions were quantified in a long-term experiment in northern France, in which no-till (NT) and conventional tillage (CT) had been differentiated during 32 years in plots under a maize–wheat rotation. Continuous CO₂ and periodical N₂O soil emission measurements were performed during two periods: under maize cultivation (April 2003–July 2003) and during the fallow period after wheat harvest (August 2003–March 2004). In order to document the dynamics and importance of these emissions, soil organic C and mineral N, residue decomposition, soil potential for CO₂ emission and climatic data were measured. CO₂ emissions were significantly larger in NT on 53% and in CT on 6% of the days. From April to July 2003 and from November 2003 to March 2004, the cumulated CO₂ emissions did not differ significantly between CT and NT. However, the cumulated CO₂ emissions from August to November 2003 were considerably larger for NT than for CT. Over the entire 331 days of measurement, CT and NT emitted 3160 ± 269 and 4064 ± 138 kg CO₂-C ha⁻¹, respectively. The differences in CO₂ emissions in the two tillage systems resulted from the soil climatic conditions and the amounts and location of crop residues and SOM. A large proportion of the CO₂ emissions in NT over the entire measurement period was probably due to the decomposition of old weathered residues. NT tended to emit more N₂O than CT over the entire measurement period. However differences were statistically significant in only half of the cases due to important variability. N₂O emissions were generally less than 5 g N ha⁻¹ day⁻¹, except for a few dates where emission increased up to 21 g N ha⁻¹ day⁻¹. These N₂O fluxes represented 0.80 ± 0.15 and 1.32 ± 0.52 kg N₂O-N ha⁻¹ year⁻¹ for CT and NT, respectively. Depending on the periods, a large part of the N₂O emissions occurred was probably induced by nitrification, since soil conditions were not favorable for denitrification. Finally, for the period of measurement after 32 years of tillage treatments, the NT system emitted more greenhouses gases (CO₂ and N₂O) to the atmosphere on an annual basis than the CT system.     

Measuring antioxidant effectiveness in food

Many new in vitro methods have been developed to evaluate antioxidant activity. Unfortunately, these in vitro methods often correlate poorly with the ability of compounds to inhibit oxidative deterioration of foods because the in vitro assays do not account for factors such as the physical location of the antioxidant, its interaction with other food components, and environmental conditions. To accurately evaluate the potential of antioxidants in foods, models must be developed that have the chemical, physical, and environmental conditions expected in food products. This paper outlines model systems of the evaluation of antioxidants in three types of foods: bulk oil, oil-in-water emulsions, and muscle foods. These model systems are not intended to be inclusive of all possible methods to measure lipid oxidation and antioxidant activity. However, use of these models would allow researchers to more easily compare research results from one paper to another.     

Functional expression in pichia pastoris of an acidic pectin methylesterase from jelly fig (Ficus awkeotsang)

A cDNA fragment encoding an acidic pectin methylesterase (PME) of jelly fig achene was successfully expressed in Pichia pastoris under the control of the glyceraldehydes-3-phosphate dehydrogenase promoter. The recombinant PME was produced as a secretory protein by N-terminal fusion of a cleavable prepropeptide for signal trafficking, and thus easily harvested from the culture medium. Compared with native N-glycosylated PME (38 kDa) purified from jelly fig achenes, this recombinant PME (45 kDa) appeared to be hyperglycosylated. Activity staining indicated that the recombinant PME was functionally active. Yet the hyperglycosylated recombinant PME possessed thermostability and enzymatic capability over a broad pH range equivalent to those of the native PME. The success of functional production of this acidic jelly fig PME in P. pastoris has significantly broadened its applications in industry.     

Determination of monounsaturated alkyl side chain 2-alkylcyclobutanones in irradiated foods

The 2-alkylcyclobutanones (2-ACBs) are formed from triglycerides by irradiation treatment and may be used as markers for this type of food processing. This paper describes a detection method for the analysis of monounsaturated alkyl side chain 2-ACBs, which is formed upon irradiation from monounsaturated fatty acids which frequently are the most abundant fatty acids in foods. The estimated radioproduction yields of the cis-2-(dodec-5'-enyl)-cyclobutanones (cis-2-dDeCB) and the cis-2-(tetradec-5'-enyl)-cyclobutanones (cis-2-tDeCB) were 1.0 +/- 0.5 and 0.9 +/- 0.2 nmol.mmol(-1) precursor fatty acid.kGy(-1), respectively, being similar to that of saturated 2-ACBs. The stability study of the s- and mu-2-ACBs in poultry meat samples irradiated at 10 kGy and stored for 3-4 weeks at 4 degrees C and 25 degrees C showed that these compounds undergo some transformation, their amounts being reduced by about 50%. These storage losses did not depend on the saturation state of the alkyl side chain. The EI-MS detection limit of 2-tDeCB is 3 times higher (0.6 pmol) than that of 2-dodecylcyclobutanone (0.2 pmol). Consequently, when the oleic acid content of the analyzed food exceeds the content of palmitic acid by a factor of 3, it would be of an advantage to apply 2-tDeCB as a marker for detection of the irradiation treatment.     

Evaluating the relationship between ecological and habitat conditions using hierarchical models

Understanding the relationship between an index of biological community state and habitat is important for policy makers and environmental managers. A common approach to modeling this relationship is to use regression. However, this simple method becomes complicated when the data are clustered and have both within-cluster and between-cluster spatial correlation. This article proposes a Bayesian hierarchical model that incorporates both types of spatial correlation. This model yields both an understanding of the within-cluster relationships as well as an overall relationship between these variables. We apply this method to evaluate the relationship between the index of biotic integrity (a common measure of fish condition) and the qualitative habitat evaluation index (a common measure of habitat quality). This method allows us to show that there is a relationship between the biological community state and habitat and that this relationship varies across river basins, while accounting for the within- and between-spatial correlations.     

Population differentiation and genetic variation inform translocation decisions for Liatris scariosa var. novae-angliae, a rare New England grassland perennial

Augmentation of small rare species populations is sometimes suggested on genetic grounds. However, outbreeding depression via dilution of local adaptation or break-up of genomic coadaptation may occur. These effects depend on the causes of population divergence. Here, we compare genetic measures of population divergence in Liatris scariosa var. novae-angliae, a rare New England perennial. We measured G_ST, neutral marker subdivision, and Q_ST, quantitative subdivision of propagule and juvenile plant traits. G_ST was relatively high. Q_ST for leaf shape exceeded G_ST, indicating local adaptation, while Q_ST for other traits fell within or below the G_ST range. Local adaptation appears low for juvenile traits, although the high G_ST cautions against translocation because of potential coadaptation. If translocation is still required, however, donor populations should contain high quantitative genetic diversity. We assess population size and allozyme diversity as predictors of quantitative genetic variation, but find these poor proxies for direct measurement.