The influence of the herbicide 2-methyl-4-chlorophenoxyacetic acid (MCPA) on the mineralization of litter-derived alkanes and the abundance of the alkane monooxygenase gene (alkB) in the detritusphere of Pisum sativum (L.)

In the present study, the temporal and spatial variation of the abundance of the alkane monooxygenase gene alkB and 16S rRNA genes in different soil compartments was analysed in the presence or absence of 2-methyl-4-chlorophenoxyacetic acid (MCPA) after the addition of pea litter to soil in a microcosm study. Samples were analysed shortly after litter addition (T0) and 1?week (T1), 3?weeks (T3) and 6?weeks (T6) after the addition of litter. In addition also, the quantity and quality of litter-derived alkanes was analysed and measured. The results revealed a fast and complete degradation of MCPA in all compartments throughout the experiment. Nevertheless, significant changes in the distribution patterns of short- and middle-chained alkanes suggest an interaction of MCPA and alkane degradation. alkB gene copy numbers were highly influenced by the time point of analysis and by the investigated soil compartment. Overall, an increase in alkB gene copy numbers from T0 to T3 was visible in the upper soil compartments whereas a decrease compared to T0 was measured in the deeper soil compartments. MCPA addition resulted in an increase of alkB abundance at T6. Gene copy numbers of 16S rRNA were not influenced by sampling time and soil compartment. In contrast to the control treatments, a slight increase in 16S rRNA gene copy numbers was visible at T1 and T3 compared to T0 in all soil compartments.     

Saponins show high entomotoxicity by cell membrane permeation in Lepidoptera

BACKGROUND: In this study, the effects of three saponins and one sapogenin with a triterpenoid or steroid structure in two lepidopteran insect cell lines, ovarian Bm5 and midgut CF‐203 cells, were analysed with regard to cell viability, cell membrane permeation, EcR responsiveness and DNA fragmentation. In addition, the entomotoxic action of Q. saponaria saponin with primary midgut cell cultures and larval stages of the cotton leafworm Spodoptera littoralis was tested. RESULTS: Both lepidopteran cell lines show a high sensitivity to all four sapo(ge)nins, with a concentration‐dependent viability loss and EC₅₀ values of 25–100 µM in MTT bioassays. A trypan blue assay with Q. saponaria saponin confirmed rapid cell membrane permeation to be a cause of cytotoxicity. Saponins caused no EcR activation in Bm5 cells, but a loss of ecdysteroid signalling was observed with IC₅₀ values of 5–10 µM . Lower saponin concentrations induced DNA fragmentation, confirming their potential to induce apoptosis. Finally, Q. saponaria saponin caused cytotoxicity in primary midgut cell cultures of S. littoralis (EC₅₀ = 4.7 µM ) and killed 70–84% of S. littoralis larvae at pupation at 30‐70 mg g^?1, while lower concentrations retarded larval weight gain and development. CONCLUSIONS: The data obtained provide evidence that saponins exert a strong activity on lepidopteran cells, presumably based on a cytotoxic action due to permeation of the cell membrane. Primary midgut cell cultures and larvae of S. littoralis showed high sensitivity to Q. saponaria saponin, indicating the insect midgut as a primary target for entomotoxicity and the potential use of saponins in the control of pest Lepidoptera. Copyright © 2012 Society of Chemical Industry     

Genetic diversity of maize inbred lines in relation to downy mildew

A major emphasis in maize breeding in Asian countries has been the improvement for resistance to downy mildew, a serious disease that causes significant yield losses. A total of 102 inbred lines, including lines from Asian breeding programs, Mexico, USA and Germany, were analyzed with 76 SSR markers to measure diversity and investigate the effect of selection for downy mildew resistance. A mean polymorphism information content of 0.59, with a range of 0.14 to 0.83, was observed. Diversity at the gene level showed an average of 5.4 alleles per locus and a range of two to 16 alleles per locus, with a total of 409 alleles. About half of the alleles in the Asian lines had frequencies of 0.10 or less, and only 2% had frequencies > 0.80, indicating the presence of many alleles, and thus a high level of diversity. Some of the high-frequency alleles were in chromosomal regions associated with disease resistance. However, the frequencies of alleles in three SSR loci that are linked to a QTL for resistance to downy mildews in Asia were not significantly different in the subtropical/tropical Asian lines as compared to all the lines in the study. Lines from the US, Germany, and China, comprised three clusters of temperate maize(GS = 0.31), while those from India, Indonesia, Philippines, Thailand, Vietnam and CIMMYT comprised seven indistinct clusters of subtropical and subtropical maize (GS = 0.29). We conclude that maize breeding activity in Asia has not caused a decline in the overall amount of diversity in the region. This revised version was published online in July 2006 with corrections to the Cover Date.     

Time of Day Effect on Foliar Nutrient Concentrations in Corn and Soybean

Foliar nutrient concentrations vary during the day. Field research was conducted to quantify and better understand this variation in corn (Zea mays L.) and soybean (Glycine max L. Merr.) with foliar sampling during the vegetative and reproductive stages. Time of day effects occurred inconsistently across nutrients. Nitrogen (N), manganese (Mn), iron (Fe), and zinc (Zn) foliar concentrations were generally high early in the day. Phosphorus (P), potassium (K), calcium (Ca), magnesium (Mg), and sulfur (S) foliar concentrations varied inconsistently with time of day, while concentrations of boron (B) in both crops and copper (Cu) in corn were not affected. Limiting foliar sampling to after 10:00 AM reduced the variation for soybean but not for corn. Interpretation by Diagnosis and Recommendation Integrated System (DRIS) did not reduce the time of day effect. The variation caused by time of day, along with other causes, affects confidence in interpretation of foliar results suggesting use of the information with either additional foliar sampling or soil testing in making nutrient management decisions.     

Soil phosphorus testing for intensive vegetable cropping

Environmental concerns and rapidly decreasing phosphorus (P) resources caused a renewed interest in improving soil P tests for a more efficient P fertilization. This led to the development of better P fertilizer recommendation systems for major arable crops and grass. Nevertheless, these P fertilizer recommendation systems seem to fail for intensive vegetable crops, with often a very short growing season and limited rooting system. This leads to low P use efficiencies in the horticultural sector. In order to address this problem we set up a study to answer following questions: (1) which soil P test predicts the plant available P content for intensive vegetable crops the best and (2) can new insights, such as combining different soil P tests, improve P fertilizer recommendations for intensive vegetable crops? To this end, bulk samples of 41 soils with very different P status (based on ammonium lactate extractable P) were collected. The plant available P content of these soils was determined using six commonly used soil P tests (P‐CaCl₂, P‐water, P‐Olsen, P‐acetate, P‐lactate, and P‐oxalate) and a P fertilizer pot experiment with endive (a very P sensitive vegetable crop) was conducted. Six pots of each soil were planted with endive. Three of these pots received no P fertilization (0P) and three pots received ammonium polyphosphate equivalent to 24 kg P ha^?1 (24P). All other factors were kept constant. Relative crop yield of the 0P fertilized plants compared to the 24P fertilized plants was determined. Plotting these relative yields against the P status of the soil per soil P test allowed to fit a Mitscherlich curve through the data. Also the combination of two different soil P tests to predict the relative yield with a Mitscherlich equation was evaluated. The coefficients of variation of the soil P tests, the R² values and the relative standard errors of the parameter estimates revealed that P‐acetate and P‐water predicted the relative yield of the 0P plants the best and that combining two different soil P tests gave no extra predictive power. This finding may form the basis for the development of a new P fertilizer recommendation system for intensive vegetable crops, leading to an improved P use efficiency in horticulture. In order to develop this new system more data relating soil P test values with RY of intensive vegetable crops should be collected.     

Local response of bacterial densities and enzyme activities to elevated atmospheric CO2 and different N supply in the rhizosphere of Phaseolus vulgaris L.

Altered flux of labile C from plant roots into soil is thought to influence growth and maintenance of microbial communities under elevated atmospheric CO₂ concentrations. We studied the abundance and function of the soil microbial community at two levels of spatial resolution to assess the response of microorganisms in the rhizosphere of the whole root system and of apical root zones of Phaseolus vulgaris L. to elevated CO₂ and high or low N supply.

At the coarser resolution, microbial biomass C, basal respiration and phospholipid fatty acid (PLFA) patterns in the rhizosphere remained unaffected by elevated CO₂, because the C flux from the whole root system into soil did not change [as shown by Haase, S., Neumann, G., Kania, A., Kuzyakov, Y., Römheld, V., Kandeler, E., 2007. Elevation of atmospheric CO₂ and N-nutritional status modify nodulation, nodule carbon supply, and root exudation of Phaseolus vulgaris L. Soil Biology & Biochemistry 39, 2208–2221]. At a higher spatial resolution, more low-molecular-weight compounds were released from apical root zones under elevated CO₂. Thus, at an early stage of plant growth (12 days after sowing), elevated CO₂ induced an increase of enzyme activities (xylosidase, cellobiosidase and leucine-aminopeptidase) in the rhizosphere soil of apical root zones. At later stages of plant growth (21 days after sowing), however, enzyme activities (those above as well as N-acetyl-β-glucosaminidase and phosphatase) decreased under elevated CO₂. The abundance of total and denitrifying bacteria in the rhizosphere soil of apical root zones was unaffected by CO₂ elevation or N supply. Plant age seemed to be the main factor influencing the density of the bacterial community. In conclusion, the soil microbial community in the apical root zone responded to elevated CO₂ by altered enzyme regulation (production and/or activity) and not by greater bacterial abundance.     

Shifts in rhizosphere microbial communities and enzyme activity of Poa alpina across an alpine chronosequence

This study quantifies the influence of Poa alpina on the soil microbial community in primary succession of alpine ecosystems, and whether these effects are controlled by the successional stage. Four successional sites representative of four stages of grassland development (initial, 4 years (non-vegetated); pioneer, 20 years; transition, 75 years; mature, 9500 years old) on the Rotmoos glacier foreland, Austria, were sampled. The size, composition and activity of the microbial community in the rhizosphere and bulk soil were characterized using the chloroform-fumigation extraction procedure, phospholipid fatty acid (PLFA) analysis and measurements of the enzymes β-glucosidase, β-xylosidase, N-acetyl-β-glucosaminidase, leucine aminopeptidase, acid phosphatase and sulfatase. The interplay between the host plant and the successional stage was quantified using principal component (PCA) and multidimensional scaling analyses. Correlation analyses were applied to evaluate the relationship between soil factors (C_org, N_t, C/N ratio, pH, ammonium, phosphorus, potassium) and microbial properties in the bulk soil. In the pioneer stage microbial colonization of the rhizosphere of P. alpina was dependent on the reservoir of microbial species in the bulk soil. As a consequence, the rhizosphere and bulk soil were similar in microbial biomass (ninhydrin-reactive nitrogen (NHR-N)), community composition (PLFA), and enzyme activity. In the transition and mature grassland stage, more benign soil conditions stimulated microbial growth (NHR-N, total amount of PLFA, bacterial PLFA, Gram-positive bacteria, Gram-negative bacteria), and microbial diversity (Shannon index H) in the rhizosphere either directly or indirectly through enhanced carbon allocation. In the same period, the rhizosphere microflora shifted from a G⁻ to a more G⁺, and from a fungal to a more bacteria-dominated community. Rhizosphere β-xylosidase, N-acetyl-β-glucosaminidase, and sulfatase activity peaked in the mature grassland soil, whereas rhizosphere leucine aminopeptidase, β-glucosidase, and phosphatase activity were highest in the transition stage, probably because of enhanced carbon and nutrient allocation into the rhizosphere due to better growth conditions. Soil organic matter appeared to be the most important driver of microbial colonization in the bulk soil. The decrease in soil pH and soil C/N ratio mediated the shifts in the soil microbial community composition (bacPLFA, bacPLFA/fungPLFA, G⁻, G⁺/G⁻). The activities of β-glucosidase, β-xylosidase and phosphatase were related to soil ammonium and phosphorus, indicating that higher decomposition rates enhanced the nutrient availability in the bulk soil. We conclude that the major determinants of the microflora vary along the successional gradient: in the pioneer stage the rhizosphere microflora was primarily determined by the harsh soil environment; under more favourable environmental conditions, however, the host plant selected for a specific microbial community that was related to the dynamic interplay between soil properties and carbon supply.     

Degradation of an Atrazine and Metolachlor Herbicide Mixture in Pesticide-Contaminated Soils from Two Agrochemical Dealerships in Iowa

The fate of atrazine and metolachlor,applied as a mixture, in soil taken from twopesticide-contaminated sites in Iowa (denoted as Alphaor Bravo) were determined in laboratory studies. Atrazine and metolachlor degradation, as well asatrazine mineralization, were greater in soilcollected from Kochia scoparia L. (Schrader)rhizosphere than in soils from unvegetated areas. Theradiolabeled ¹⁴C-carbinol and¹⁴C-morpholinone metabolites were identified in¹⁴C-metolachlor-applied soil 60 d aftertreatment. The half-life for atrazine in Alpha soilwas significantly less in the rhizosphere soil (50 d)than in unvegetated soil (193 d). Quantities ofspecific atrazine degraders were one to two orders ofmagnitude greater in Bravo soils than in Alpha soils. In an experiment with plants present, significantlymore ¹⁴C-atrazine was taken up by K.scoparia (9.9% of the applied ¹⁴C) than by Brassica napus L. Significantly less atrazine wasextractable from soils vegetated with K.scoparia than from soils vegetated with B.napus or unvegetated soils.     

Gel formation mechanism and gel properties controlled by Ca2+ in chia seed mucilage and model substances

Polygalacturonic acid (PGA) is considered as a model substance for mucilage to study mucilage–soil interactions, assuming that the gel formation mechanism of mucilage is comparable to the one of PGA. However, some studies question the accepted hypothesis, which states that, like for PGA, this mechanism relies on cross‐links between uronic acid and calcium for mucilage. The aim of this study was therefore to understand the influence of the abundance and degree of esterification of uronic acids and the influence of calcium on the gel formation mechanism in mucilage as compared to model substances. The mucilage used was from chia seeds, as it is easily available in great quantity and has gel properties shared by root mucilage. Results reported here demonstrate that, while the gel formation mechanism of PGA relied on specific cross‐links with calcium and led to heterogeneous gels, low‐methoxy pectin (LMP) formed homogeneous calcium gels also characterized by nonspecific ionic interactions with calcium. On the contrary, despite similar uronic acid content to LMP, chia seed mucilage was mostly governed by weak electrostatic interactions between entangled polymer chains, which conferred the gel poor water retention. Addition of calcium reduced repulsion and molecular expansion, resulting in a reduction of the water content in chia seed mucilage. Finally, the discrepancies between PGA, LMP and chia seed mucilage discredit the use of PGA as model for chia seed mucilage. Comparison with root mucilage is still needed. This study offers the keys for further mechanistic understanding on the influence of mucilage on soil properties.