Designing spatially-explicit reserve networks in the presence of mandatory sites

In the selection of reserve networks there are special sites whose ecologic, strategic or morphologic values dictate their inclusion. The existence of regional rare or confined-distribution species is one among other reasons that often determines the existence of such mandatory sites. Moreover, quite often these mandatory sites are located far apart. Although several methods have been proposed to accommodate structural connectivity in reserve selection, they were not devised to deal specifically with such mandatory sites. Those that encourage aggregation of sites by means of criteria incorporated in the objective function do not seem suitable to acquire consistent connectivity levels in the presence of mandatory sites. Methods that enforce “full connectivity” tend to produce long and narrow solutions, which results in efficiency deficits and biological unsuitability, as they force the selection of more sites of less quality to ensure connectivity. Hence specific methods to select ecological reserves when mandatory sites exist are needed. Here we discuss and propose a 0-1 linear programming model to deal with this issue. The model was applied in two data sets of forest breeding birds and butterflies. Its solutions and computational performances are discussed.     

Soil mapping for precision agriculture using support vector machines combined with inverse distance weighting

Precision Agriculture - Kriging has been shown to be the best interpolator to interpolate maps in precision agriculture. However, Kriging requires a high number of sampling points to generate...     

Use of genetic markers to identify the illegal trade of billfish in the second largest fishing warehouse of Latin America

1. Billfish are oceanic pelagic species that are often caught by tuna fleets and are of great interest for sport fishing. Two species of billfish have specific legislation prohibiting their marketing and export in Brazil.
2. DNA barcoding is a universal system of molecular identification based on a sequence of mitochondrial DNA cytochrome oxidase subunit I (COI), which serves as a diagnostic genomic marker in each species.
3. The barcode DNA technique was used to identify billfish marketed in the second largest fishing warehouse in Latin America, the CEAGESP (Companhia de Entrepostos e Armazéns Gerais de São Paulo), located in São Paulo, Brazil. Seventy‐nine samples of billfish were collected during three inspection visits carried out by Instituto Brasileiro do Meio Ambiente e dos Recursos Naturais Renováveis.
4. After DNA sequencing, 70 samples (88.60%) were identified to the species level; 21 (30.00%) were identified as Xiphias gladius, 43 (61.42%) as Istiophorus platypterus and six (8.57%) as Kajikia albida. The sale of this latter species is prohibited in Brazil and it is considered Vulnerable on the list of endangered species of the IUCN and in the official list of species of endangered Fauna – Fish and Aquatic Invertebrates.
5. Molecular analyses proved to be very efficient at uncovering irregularities in the identification of the white marlin (K. albida), which was traded illegally in CEAGESP, demonstrating the ineffectiveness of the current monitoring techniques used and emphasizing the need for the adoption of better public policies for the conservation of the species.

     

Conservation of Amazonian aquatic mammals

1. Aquatic mammals worldwide are highly threatened in freshwater ecosystems where they are affected by direct human activities (e.g. hunting) as well as indirect human alteration of freshwater ecosystems (e.g. dams, mining activity). Although aquatic mammals of the Amazon Basin are experiencing many growing threats, little is known about the escalating impacts on them, current limitations in protection mechanisms, and possible strategies to ensure their conservation. This study synthesizes the available information on Amazonian aquatic mammals, including the ecological characteristics of these species, key threats, population status and conservation prospects.
2. Amazonian aquatic mammals comprise seven species – Inia geoffrensis, Inia boliviensis, Inia araguaiaensis, Sotalia fluviatilis, Trichechus inunguis, Pteronura brasiliensis and Lontra longicaudis – which are characterized by low reproductive rates and keystone ecosystem roles. These species are endangered mainly by biological resource use, natural ecosystem modifications, energy production and mining, and climate change. Although information is sparse, there is evidence that these threats are inducing population declines of Inia spp., and hindering the recovery of populations of P. brasiliensis.
3. Protection mechanisms for these species mostly include national and international laws and agreements, legislation governing environmental licensing and protected areas. Each of these protection mechanisms, however, has limited capacity to protect Amazonian aquatic mammals, largely because they are poorly enforced, lack transnational coordination or require population trend data that do not exist.
4. Reversing the current state of affairs for Amazonian aquatic mammals requires an integrated research and policy approach that, at a minimum, substantially increases the present capacity to monitor their population responses to human impacts, establishes effective enforcement of existing legislation and prevents further impacts from hydropower development. To implement such an approach, information on the ecology of these species is necessary to create public and scientific awareness.

     

Identification and isolation of psittacid herpesvirus from psittacids in Brazil

Psittacid herpesvirus (PsHV) was isolated from 41 birds kept in captivity in Belo Horizonte, Minas Gerais/Brazil using chicken embryo fibroblasts (CEF) cell cultures. For this study, leukocytes or cloacal swabs of live birds were used. Also, portions of liver, spleen or kidney from birds collected at necropsy were utilized for these tests. PCR tests confirmed the presence of PsHV in 100% of samples. Thirty-three of the PCR products were sequenced and the results disclosed a 99% and 100% identity when compared with other sequences PsHV-1 (AY372243.1 and AF261756.1), previously deposited in GenBank. In addition, histopathology was performed and 19 of the 29 birds contained random multifocal lymphoplasmacytic hepatitis with necrotic foci, suggestive of viral infection. Three samples were examined by electron microscopy to visualize the viral particles obtained from cell culture. The viral structures measured 269 nm in average, had envelopes with an icosahedral capsid and tegument, consistent with herpesvirus. Thus, a total of 41 isolates were obtained from PsHV cell cultivation in CEF, confirming the circulation of the virus between parrots kept in captivity in Belo Horizonte, and affirming the importance of further studies in this area.     

Seasonal Variation of n-Alkanes and Polycyclic Aromatic Hydrocarbon Concentrations in PM10 Samples Collected at Urban Sites of São Paulo State, Brazil

Two campaigns were conducted in 2003 and 2004 at sites of different characteristics in São Paulo State. Atmospheric samples were collected twice a month during a 1-year campaign (an extensive campaign) from April 2003 to May 2004 at São Paulo City (SPA) site. The results showed that the pollutant concentrations were controlled not only by local source emissions but also through pollutant transport, both of which were dictated by the prevailing meteorological conditions. Chrysene, benzo(e)pyrene, and benzo(b)fluoranthene were the major compounds found, and diagnostic ratios indicated the multiplicity of sources: industrial, vehicular emission, and atmospheric transport. Intensive campaign (from July 15 to 30, 2003) samples showed higher cancer risk than those collected in the extensive campaign. Samples collected at the urban site (SPA) presented comparable values of PM₁₀ to the urban site influenced by sugarcane burning (Araraquara, ARQ). On the other hand, PAH average concentrations were higher at SPA than at other sites. In both campaigns, the highest value for dry atmospheric deposition flux was found in autumn and winter. Individually, BPe presented the highest deposition flux followed by BbF in the intensive campaign. It seems that during those periods, the dry deposition was the main airborne PAH removal mechanism. Diagnostic ratios suggested also vehicular emissions at the sites and photochemical reactions influencing in the atmospheric particulate matter composition. SPA and PRB samples presented higher cancer risk than ARQ in the intensive campaign.     

Orthopedic implant of a polyhydroxybutyrate (PHB) and hydroxyapatite composite in cats

The purpose of this study was to evaluate the tissue response to a 70% polyhydroxybutyrate and 30% hydroxyapatite composite in the form of a bone implant, placed intracortically in the distal metaphyseal of the right femur, and subcutaneous implants in cats. Samples of the composite were implanted subcutaneously in the dorsolumbar region and the distal metaphyseal region of the right femur of the animals. The study used 12 neutered adult mixed breed cats, weighing an average of 3.5kg. The cats were randomly divided into three groups: GI, GII and GIII, according to the length of the assessment period. The assessments of their subcutaneous and bone tissues were performed at 15, 30 and 45 days and at 30, 60 and 90 days, respectively. The subcutaneous and bone reactions to the composites were characterized by granulomatous inflammation with a predominance of macrophages and giant cells. The results showed that the composites triggered a chronic local inflammatory response, despite their clinical acceptance.     

A Chemoinformatics Approach to the Discovery of Lead-Like Molecules from Marine and Microbial Sources En Route to Antitumor and Antibiotic Drugs

The comprehensive information of small molecules and their biological activities in the PubChem database allows chemoinformatic researchers to access and make use of large-scale biological activity data to improve the precision of drug profiling. A Quantitative Structure–Activity Relationship approach, for classification, was used for the prediction of active/inactive compounds relatively to overall biological activity, antitumor and antibiotic activities using a data set of 1804 compounds from PubChem. Using the best classification models for antibiotic and antitumor activities a data set of marine and microbial natural products from the AntiMarin database were screened—57 and 16 new lead compounds for antibiotic and antitumor drug design were proposed, respectively. All compounds proposed by our approach are classified as non-antibiotic and non-antitumor compounds in the AntiMarin database. Recently several of the lead-like compounds proposed by us were reported as being active in the literature.     

Factors associated with seroprevalence of Neospora caninum in dairy cattle in southeastern Brazil

Neosporosis is an infectious disease caused by Neospora caninum, an obligate intracellular cyst-forming protozoan considered a major cause of miscarriage in dairy cattle in many parts of the world. This cross-sectional study evaluated the relationship between reproductive abnormalities and seropositivity to N. caninum in 1,204 dairy cows from 40 farms located in the state of Minas Gerais, southeastern Brazil. Producers were interviewed, and blood samples were collected to perform indirect immunofluorescence tests (IFAT 1:200). Association between reproductive abnormalities and seropositivity in cattle was evaluated with generalized estimating equations. The true herd-level seroprevalence of N. caninum was 95 % (83.3–99.1), while the individual-level true seroprevalence was 21.6 % (19.2–24.2). Several reproductive abnormalities were significantly associated with seropositivity to N. caninum: occurrence of repeated estrus (p?=?0.02; OR?=?3.84; 95 % CI?=?1.239–11.893), repeated miscarriages (p?=?0.001; OR?=?2.54; 95 % CI?=?1.423–5.402), and temporary anestrus (p?=?0.001; OR?=?3.44; 95 % CI?=?1.976–5.994). Furthermore, loose dogs (p?=?0.041; OR?=?2.20; 95 % CI?=?1.033–4.672) when fed raw meat (p?=?0.001; OR?=?1.91; 95 % CI?=?1.443–2.519) are risk factors for N. caninum infection. We observed that seropositivity to N. caninum in cattle increases risk of miscarriage by almost twice throughout the reproductive life of cows (p?=?0.004; OR?=?1.978; 95 % CI?=?1.249–3.131). Serologic evidence in this study indicates that N. caninum infection is widely distributed among dairy herds and significantly associated with reproductive disorders, especially miscarriage, repeated estrus, and temporary anestrus.