Developing and validating microsatellite markers in elephant grass (<Emphasis Type="Italic">Pennisetum purpureum</Emphasis> S.)

Elephant grass [Pennisetum purpureum S.; syn. Cenchrus purpureus (Schumach.) Morrone] is an important global forage crop and is recognized for high yields of herbage with good nutritive value. It also has high biomass potential to be utilized as a biofuel feedstock. Whereas several previous genetic studies adapted simple sequence repeat (SSR) markers from pearl millet [Pennisetum glaucum (L.) R.Br.] for investigations in elephant grass, the present study developed SSR markers from 3536 DNA sequences derived from 16 elephant grass entries. A total of 3866 SSRs were identified including 1028 monomeric, 2019 dimeric, 735 trimeric, 49 tetrameric, 20 pentameric and 15 hexameric repeat motifs. Three hundred and seven sequences contained more than one repeated motif, and 154 SSRs were present in compound formation. Susequenctly,  four elephant grass and two pearl millet genotypes were chosen to validate 727 SSR markers. Of these, 628 markers produced visually detectable amplification products, including 73 (11.6%) polymorphic ones across all six genotypes. Polymorphism between the four elephant grass genotypes was revealed by 316 (50.6%) markers with diversity index values ranging from 0.75 to 0.38. Dimeric SSRs had the highest polymorphic rate (48.7%). These validated SSR markers had 58.6% (368 of 628) transferability rate to pearl millet. The availability of these polymorphic SSR markers will support advanced genetic studies in P. purpureum and its relatives.     

Filling the European blank spot—Swiss soil erodibility assessment with topsoil samples

Soil erodibility, commonly expressed as the K‐factor in USLE‐type erosion models, is a crucial parameter for determining soil loss rates. However, a national soil erodibility map based on measured soil properties did so far not exist for Switzerland. As an EU non‐member state, Switzerland was not included in previous soil mapping programs such as the Land Use/Cover Area frame Survey (LUCAS). However, in 2015 Switzerland joined the LUCAS soil sampling program and extended the topsoil sampling to mountainous regions higher 1500 m asl for the first time in Europe. Based on this soil property dataset we developed a K‐factor map for Switzerland to close the gap in soil erodibility mapping in Central Europe. The K‐factor calculation is based on a nomograph that relates soil erodibility to data of soil texture, organic matter content, soil structure, and permeability. We used 160 Swiss LUCAS topsoil samples below 1500 m asl and added in an additional campaign 39 samples above 1500 m asl. In order to allow for a smooth interpolation in context of the neighboring regions, additional 1638 LUCAS samples of adjacent countries were considered. Point calculations of K‐factors were spatially interpolated by Cubist Regression and Multilevel B‐Splines. Environmental features (vegetation index, reflectance data, terrain, and location features) that explain the spatial distribution of soil erodibility were included as covariates. The Cubist Regression approach performed well with an RMSE of 0.0048 t ha h ha^?1 MJ^?1 mm^?1. Mean soil erodibility for Switzerland was calculated as 0.0327 t ha h ha^?1 MJ^?1 mm^?1 with a standard deviation of 0.0044 t ha h ha^?1 MJ^?1 mm^?1. The incorporation of stone cover reduces soil erodibility by 8.2%. The proposed Swiss erodibility map based on measured soil data including mountain soils was compared to an extrapolated map without measured soil data, the latter overestimating erodibility in mountain regions (by 6.3%) and underestimating in valleys (by 2.5%). The K‐factor map is of high relevance not only for the soil erosion risk of Switzerland with a particular emphasis on the mountainous regions but also has an intrinsic value of its own for specific land use decisions, soil and land suitability and soil protection.     

Growth phenology in <Emphasis Type="Italic">Pinus halepensis</Emphasis> Mill.: apical shoot bud content and shoot elongation

Key message

The chronology of periods of organogenesis and elongation is highlighted in Pinus halepensis.The two first growth units of an annual shoot are preformed inside the bud during the previous year. The following growth units are formed during the spring or summer of the current year.

Context

Analysis of annual shoot length growth phenology is crucial to assess the impact of climate change on tree production. Little is known about the basic growth characteristics and the phenology of pines.

Aims

The present study disentangles the roles of shoot organogenesis vs elongation in the annual growth cycle of the polycyclic Aleppo pine.

Methods

Growth of young Pinus halepensis trees was monitored monthly for 1 year. At each monitoring date, the bud content and meristem dimensions of the main stem shoots apices were analyzed.

Results

The two first growth units of an annual shoot are preformed inside the bud during the previous year. The following growth units are formed during the spring or summer of the current year. The gap between a shoot organogenesis and its elongation may vary from 1 month, for the last growth unit, to half a year, for the first growth units.

Conclusion

Our results underline the importance of taking seasonal environmental conditions from both the previous and the current year into account, in order to study the plasticity of annual shoot growth and its response to climate change and variability.

     

Bioavailability of pelargonidin-3-O-glucoside and its metabolites in humans following the ingestion of strawberries with and without cream

Plasma and urine were collected over a 24 h period after the consumption by humans of 200 g of strawberries, containing 222 micromol of pelargonidin-3- O-glucoside, with and without cream. The main metabolite, a pelargonidin- O-glucuronide, reached a peak plasma concentration ( C max) of 274 +/- 24 nmol/L after 1.1 +/- 0.4 h ( t max) when only strawberries were ingested. When the strawberries were eaten with cream, the C max was not statistically different but the t max at 2.4 +/- 0.5 h was delayed significantly ( p < 0.001). The pelargonidin- O-glucuronide, along with smaller quantities of other metabolites, was also excreted in urine in quantities corresponding to ca. 1% of anthocyanin intake. The quantities excreted over the 0-24 h collection period were not influenced significantly by cream. However, the 0-2 h excretion of anthocyanin metabolites was significantly lower when the strawberries were eaten with cream, whereas the reverse occurred during with the 5-8 h excretion period. In keeping with these observations, measurement of plasma paracetamol and breath hydrogen revealed that cream delayed gastric emptying and extended mouth to cecum transit time.     

Effects of whale watching on the activity budgets of humpback whales,Megaptera novaeangliae (Borowski, 1781), on a feeding ground

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Adsorption von Pflanzenschutzmitteln und DOC an Saugkerzen aus Glas und Keramik

Sorption of pesticides and DOC on glass and ceramic suction cups Suction cups are widely used for the sampling of soil solution. Due to sorption and desorption processes the concentration of dissolved substances in the samples may vary considerably depending on the material of the suction cups. In order to minimize these losses, a new glass suction cup was developed. In laboratory studies, aqueous solutions of pesticides and DOC were percolated through both types of suction cups; the concentration of pesticides and DOC in the percolates was examined. The pesticides pendimethaline, terbuthylazine, metolachlor and chlortoluron were tested at concentrations of 2, 20, and 200 μg 1⁻¹. The average losses due to sorption by the suction cups were 10% (1.1—31%) for the ceramic cups and 3.1% (0—11%) for the glass cups. Sorption effects increased with increasing hydrophobicity of the pesticides and decreasing pesticide concentrations. Thus, at a concentration of 2 μg 1⁻¹ ceramic cups sorbed 31% of pendimethaline compared with 7.7% in the case of glass cups. Corresponding tests with soilborne DOC solutions yielded comparable results. Ceramic suction cups adsorbed up to 50% of the DOC input concentration, while glass cups retarded 2.4% on average. These results are especially noteworthy because soilborne dissolved organic substances are effective sorbents and carriers for pesticides. The new type of glass suction cups may help to improve the results of pesticide field studies and, in consequence, the assessment and prediction of the leaching behavior of pesticides.     

Waxy gene haplotypes: Associations with apparent amylose content and the effect by the environment in an international rice germplasm collection

Apparent amylose content (AAC), the key determinant of rice end-use quality attributes, is primarily controlled by the Waxy gene which codes for granule bound starch synthase (GBSS). We examined the combination of sequence variation in the Waxy gene and environmental effects, and their associations with AAC using 171 rice accessions originating from 43 countries. The combination of two single-nucleotide-polymorphism (SNP) markers in the Waxy gene allows for the identification of three marker haplotypes in this gene. The first SNP is at the leader intron splice site (In1 SNP), and the second polymorphism is in exon 6. The haplotypes explained 86.7% of the variation in AAC and discriminated the three market classes of low, intermediate and high AAC rice from each other. The environment affected the AAC of all haplotypes. Higher air temperature during grain development associated with a decrease in AAC of low and intermediate AAC-types, but with an increase in AAC of high AAC-type. The association of AAC with several Waxy RM190 microsatellite-(CT_n) alleles in combination with the In1 SNP was also examined. In conclusion, the Waxy haplotypes studied appear to be useful markers for selecting the AAC of breeding lines developed from the world's rice germplasm.