Variations in condition and body constitution in a tropical estuarine fish with year-round recruitment

Fish condition (Fulton's K) and the abundance of biochemical constituents (water, protein, lipid and carbohydrate) of juveniles of the tropical estuarine fish, Ambassis vachelli, were monitored over a 15 month period. Fulton's K and biochemical constituents of juveniles recruiting into the adult habitat varied significantly throughout the study. Correlations between Fulton's K and all biochemical measures were weak, with a maximum correlation of 0.1379 (with protein abundance). Significant differences in condition and body constitution of individuals suggest that juveniles recruiting into the adult habitat are not in equal condition and therefore survivorship and success may vary within and among cohorts. Temperature (and salinity) display greater variation in tropical estuarine waters than in other tropical waters and are likely to play a role in determining recruit condition and body constitution. However, the exact role of physical parameters in determining condition and body constitution of fishes is still unknown.     

Localization and genotyping of canine papillomavirus in canine inverted papillomas

Numerous canine papillomaviruses (CPVs) have been identified (CPV1–23). CPV1, 2, and 6 have been associated with inverted papillomas (IPs). We retrieved 19 IPs from 3 histopathology archives, and evaluated and scored koilocytes, inclusion bodies, giant keratohyalin granules, cytoplasmic pallor, ballooning degeneration, and parakeratosis. IHC targeting major capsid proteins of PV was performed, and CPV genotyping was achieved by PCR testing. Tissue localization of CPV DNA and RNA was studied by chromogenic and RNAscope in situ hybridization (DNA-CISH, RNA-ISH, respectively). IPs were localized to the limbs (50%), trunk (30%), and head (20%), mainly as single nodules (16 of 19). In 15 of 19 cases, immunopositivity was detected within the nuclei in corneal and subcorneal epidermal layers. PCR revealed CPV1 in 11 IPs and CPV2 DNA in 3 IPs. Overall, 14 of 17 cases were positive by both DNA-CISH and RNA-ISH, in accord with PCR results. A histologic score >5 was always obtained in cases in which the viral etiology was demonstrated by IHC, DNA-CISH, and RNA-ISH. IHC and molecular approaches were useful to ascertain the viral etiology of IPs. Although IHC is the first choice for diagnostic purposes, ISH testing allows identification of PV type and the infection phase. RNA-ISH seems a promising tool to deepen our understanding of the pathogenesis of different PV types in animal species.     

Nonparametric machine learning for mapping forest cover and exploring influential factors

Context

The contribution of forest ecosystem services to human well-being varies over space following the dynamics in forest cover. Use of machine learning models is increasing in projecting forest cover changes and investigating the drivers, yet references are still lacking for selecting machine learning models for spatial projection of forest cover patterns.

Objectives

We assessed the ability of nonparametric machine learning techniques to project the spatial distribution of forest cover and identify its drivers using a case study of Tasmania, Australia.

Methods

We developed, evaluated, and compared the performance of four nonparametric machine learning models: support vector regression (SVR), artificial neural networks (ANN), random forest (RF), and gradient boosted regression trees (GBRT).

Results

The results demonstrated that RF far outperformed the other three models in both fitting and projection accuracy, and required less computional costs. GBRT outperformed SVR and ANN in projection accuracy. However, RF exhibited serious overfitting due to the full growth of its decision trees. The influence rankings of explanatory variables on spatial patterns of forest cover were different under the four models. Land tenure type and rainfall were identified among the top four most influential variables by all four models. The ranking produced by the RF model was significantly different with topographic factors associated with land clearing and production costs (elevation and distance to timber facilities) being the two most influential variables.

Conclusions

We encourage practitioners to consider nonparametric machine learning methods, especially RF, when facing problems of complex environmental data modelling.

     

Sexing accuracy and indicators of maturation status in captive Murray cod Maccullochella peelii peelii using non-invasive ultrasonic imagery

Macroscopic- and histological-based assessments of gonad condition were compared with ultrasound images to determine the feasibility of this technology as a non-invasive diagnostic tool for identifying sex and assessing maturation status of Murray cod. Four age-classes (1+, 2+, 3+ and 6+ years), were sub-sampled at monthly intervals throughout their annual reproductive cycle and scanned with a 5 MHz linear transducer. An interpretation of sex was made from the resulting images and maximum cross-sectional gonad diameter and area were recorded. Fish were subsequently dissected to confirm gender, and the weights and maturation status of gonads determined and then compared with their respective image profile. Ovaries of females were usually a distinctive feature in ultrasound images, being particularly obvious in older and/or more developed fish. In contrast, the identification of male testis was more problematic. Nonetheless, identifying sex from ultrasound images was consistently achieved by recording the presence/absence of a female ovary (96% total sexing accuracy). Maximum cross-sectional ovary diameter and area were highly correlated with gonad weight (r² = 0.90 and 0.89, respectively) suggesting that indices of maturation status, comparable to the gonadosomatic index (GSI), can be obtained non-destructively from ultrasound scans of females. A less distinct relationship occurred between these dimensions and weight of testes (r² = 0.41). Significant increases (P < 0.05) in mean gonad index (GI, calculated from gonad diameter) occurred for most gonad development stages. However, differences in mean GI between maturation stages were confounded by phenotypic variability, indicating that GI may be limited to population level studies. Nevertheless, ultrasound images of ovaries at each development stage were visually distinctive and enabled qualitative evaluations of maturity, thereby complementing quantitative GI assessments. Repeated serial-monitoring of the same population using ultrasound appears to have great potential for tracking maturation-induced changes in broodfish.     

Evaluating the Technique of Using Nitrogen Retention as a Response Criterion for Amino Acid Studies in the Horse

Six Quarter Horse yearling fillies were used in a duplicated 3 × 3 Latin square experiment to evaluate the technique of using nitrogen retention as a response criterion for amino acid studies in the horse. Yearlings were paired by age and randomly assigned to one of three concentrates fed with medium-quality Coastal Bermudagrass hay. Diet A, a soybean meal–based concentrate, was amino acid sufficient. Diet B, a cottonseed hull–based concentrate containing 2% urea, was amino acid deficient. Horses fed diet C, identical to diet B, were orally dosed with synthetic essential amino acids and cysteine, immediately before eating, to match amino acid levels in diet A. Nitrogen retention was not different between diets A and B. There was a trend for horses fed diet C to have higher nitrogen retention, as a result of higher nitrogen intake. Nitrogen retained as a percent absorbed was lower (P < .05) for diet B than for diet A, whereas values for diet C were not different from diets A or B. Nitrogen retention was not an effective response criterion in this study. Differences in nitrogen retained as a percentage absorbed were observed between amino acid–sufficient and deficient diets. However, horses fed amino acid–deficient diets and dosed with synthetic amino acids likely require some modified dosage level to achieve the same or higher values as those for amino acid–sufficient diets.     

Extragenital transmissible venereal tumour associated with circulating neoplastic cells in an immunologically compromised dog

An adult male intact boxer was presented because of diffuse cutaneous nodules. Fine‐needle aspirate revealed transmissible venereal tumour (TVT) cells. Neoplastic cells were also observed in the peripheral blood. Associated simultaneous diseases included leishmaniosis, demodicosis, papillomatosis and coccidiosis. Immunosuppression may have aggravated disease and triggered widespread metastases. The dog was hospitalized and administered oral amoxicillin/clavulanate, subcutaneous meglumine antimonite to treat leishmaniosis and oral chlortetracycline to treat coccidiosis. Intravenous injection of vincristine at weekly interval was used to treat TVT. A rapid regression of cutaneous nodules was noted; however, intractable diarrhoea developed, eventually leading to death after 18 days. This is the first report describing an unusual case of extragenital TVT associated with circulating neoplastic cells in an immunosuppressed dog presenting with multiple cutaneous nodules.     

Using occupancy and species distribution models to assess the conservation status and habitat use of the goldline darter (Percina aurolineata) in Georgia,USA

The goldline darter (Percina aurolineata) is threatened by recent increases in urbanisation in the Coosawattee River watershed, but no studies have addressed their current status. Similarly, limited data on habitat use make it difficult to understand factors that may impact this species. We compared occurrence data before (1996–2000) and after (2009–2011) a period of rapid development and population growth within the watershed. Single‐season occupancy models were built to account for imperfect species detection and to identify habitat covariates. MaxEnt was used to identify important stream reaches for conservation and to understand landscape scale factors correlated with the distribution of goldline darters. Our results indicate a high proportion of sites occupied upstream of Carters Lake during the historic and recent time periods, with no evidence of decline. However, occurrences of goldline darters for sites in Talking Rock Creek and the lower Coosawattee River were sparse in the historic period and absent during the recent period. The probability of detecting goldline darters is low and was positively associated with the occurrence of small substrate. Species distribution models were strongly influenced by watershed area and elevation and indicated a high probability of suitable habitat within the Coosawattee River and large tributaries upstream of Carters Lake. While goldline darter occupancy is currently stable upstream of Carters Lake, continued urbanisation is a threat to long‐term persistence. We recommend additional monitoring and describe a protocol that allows for precise estimates of species occupancy while minimising the risk of sampling‐related mortality.