Estimating nocturnal ecosystem respiration from the vertical turbulent flux and change in storage of CO2

Micrometeorological measurements of nighttime ecosystem respiration can be systematically biased when stable atmospheric conditions lead to drainage flows associated with decoupling of air flow above and within plant canopies. The associated horizontal and vertical advective fluxes cannot be measured using instrumentation on the single towers typically used at micrometeorological sites. A common approach to minimize bias is to use a threshold in friction velocity, u_*, to exclude periods when advection is assumed to be important, but this is problematic in situations when in-canopy flows are decoupled from the flow above. Using data from 25 flux stations in a wide variety of forest ecosystems globally, we examine the generality of a novel approach to estimating nocturnal respiration developed by van Gorsel et al. (van Gorsel, E., Leuning, R., Cleugh, H.A., Keith, H., Suni, T., 2007. Nocturnal carbon efflux: reconciliation of eddy covariance and chamber measurements using an alternative to the u_*-threshold filtering technique. Tellus 59B, 397–403, Tellus, 59B, 307-403). The approach is based on the assumption that advection is small relative to the vertical turbulent flux (F_C) and change in storage (F_S) of CO₂ in the few hours after sundown. The sum of F_C and F_S reach a maximum during this period which is used to derive a temperature response function for ecosystem respiration. Measured hourly soil temperatures are then used with this function to estimate respiration R_Rmax. The new approach yielded excellent agreement with (1) independent measurements using respiration chambers, (2) with estimates using ecosystem light-response curves of F_c + F_s extrapolated to zero light, R_LRC, and (3) with a detailed process-based forest ecosystem model, R_cast. At most sites respiration rates estimated using the u_*-filter, R_ust, were smaller than R_Rmax and R_LRC. Agreement of our approach with independent measurements indicates that R_Rmax provides an excellent estimate of nighttime ecosystem respiration.     

Clinical presentation, treatment, and outcome of dacryocystitis in rabbits: a retrospective study of 28 cases (2003–2007)

Objective  To document the clinical presentation, diagnostics, treatment, and clinical outcome of rabbits with dacryocystitis.
Materials and methods  This retrospective study included 28 rabbits diagnosed with dacryocystitis. Available records of clinical and ophthalmological examinations, bacteriological samplings, diagnostic imaging, and treatment were reviewed. A telephone survey of the owners was conducted to evaluate recovery and recurrences.
Results  The mean age of the 28 rabbits presenting with ocular discharge from the nasolacrimal duct was 4.4 years. In 25 rabbits (89%), dacryocystitis was a unilateral finding. No underlying cause could be determined in 10 animals (35%). Dental malocclusion was observed in 14 rabbits (50%) and rhinitis in two animals (7%), with one animal showing both symptoms (4%). One rabbit (4%) presented with panophthalmitis. Most animals (96%) received topical antibiotic treatment. If necessary, additional topical (acetylcysteine, vitamin A ointment, nonsteroidals) or systemic treatment (antibiotics, nonsteroidals, paramunity inducer, and glucocorticoids) was provided. The mean duration of therapy was 5.8 weeks. The nasolacrimal duct was flushed in 27 of 31 affected eyes (87%). Dentistry was performed in 80% of the animals suffering from malocclusion. Regarding the clinical outcome, 12 animals (43%) showed complete recovery, eight rabbits (28%) were euthanized, three (11%) died due to unrelated causes, and three (11%) were lost to follow-up. Two rabbits (7%) continue to display signs of dacryocystitis and are being treated symptomatically by the owners.
Conclusions  This study reports the clinical presentation, treatment, and outcome of dacryocystitis in rabbits and outlines the importance of examination of the oral cavity, diagnostic imaging, and bacteriologic sampling.     

Detection of fluoroquinolone resistance level in clinical canine and feline Escherichia coli pathogens using rapid real-time PCR assay

Fluoroquinolones are used to treat infections caused by Escherichia coli in canine and feline veterinary patients, particularly those infecting the urinary tract. The gyrA gene is a primary target causing fluoroquinolone resistance in Gram negative coliforms, with mutations in codons 83 and 87 generally associated with high-level of resistance E. coli clinical isolates. We have developed a fluorescence resonance energy transfer (FRET) quantitative PCR to identify enrofloxacin-resistance in clinical E. coli isolates that carry mutations in codons 83 and 87 of gyrA. This real-time quantitative PCR assay is rapid, economical, and sensitive compared with cultured antimicrobial susceptibility testing. The assay identified as few as four genome copies per reaction from culture and 19 genome copies in urine. For the 70 isolates tested, the sensitivity was 87.5% (95% CI = 75–95.3%) (n = 42/48), specificity was 100% (95% CI = 87.3–100%) (n = 22/22), whereas accuracy was 91.4% (95% CI = 82.3–97%) (n = 64/70). Furthermore, we were able to accurately differentiate between the wild type and mutants E. coli directly from infected canine urine samples (n = 5) within 2 h. These results were confirmed by sequence alignments of the PCR products and comparison with the susceptibility testing. The FRET-PCR assay appears to have promising clinical application as an early diagnostic tool for rapid and sensitive detection and differentiation of the level of fluoroquinolone resistance among clinical E. coli isolates that may facilitate design of the dosing regimen.     

Clinical evaluation of pimecrolimus eye drops for treatment of canine keratoconjunctivitis sicca: a comparison with cyclosporine A

The aim of this study was to evaluate the efficacy of pimecrolimus oil-based eye drops in alleviating the clinical signs of keratoconjunctivitis sicca (KCS) in dogs and to compare the efficacy with that of cyclosporine A (CsA) ointment. An open-label, multicenter study enrolling 44 dogs previously untreated with CsA was conducted. Dogs were randomly assigned to a treatment group and medicated twice daily for 8 weeks. After that time the mean increase (+/-SEM) in the Schirmer tear test was 9.2+/-1.6 mm/min in the pimecrolimus group and 5.8+/-1.1 mm/min in the CsA group (P=0.085). The improvement in clinical signs of inflammation in eyes treated with pimecrolimus was significantly greater than in eyes treated with CsA (P=0.02). The results show that 1% pimecrolimus oily eye drops are as safe as and more effective than CsA ointment in controlling KCS in dogs.     

Integrating the fish embryo toxicity test as triad element for sediment toxicity assessment based on the Water Framework Directive approach

Purpose  

The objective of this study was to complement analyses according to the European Union Water Framework Directive (WFD) with a sediment toxicity analysis as part of an integrated river assessment. To this end, Hessian water courses were analyzed using the sediment quality triad concept according to Chapman with chemical analyses, in situ effect evaluations, and ecotoxicological assessments. For the ecotoxicological assessment (fish embryo toxicity test with Danio rerio), a new evaluation scheme was developed, the fish teratogenicity index (FTI), that allows for a classification of sediments into ecological quality classes compliant to the WFD.     

Responses of Batis maritima plants challenged with up to two‐fold seawater NaCl salinity

Batis maritima is a promising halophyte for sand‐dune stabilization and saline‐soil reclamation. This species has also applications in herbal medicine and as an oilseed crop. Here, we address the plant response to salinity reaching up to two‐fold seawater concentration (0–1000 mM NaCl), with a particular emphasis on growth, water status, mineral nutrition, proline content, and photosystem II integrity. Plant biomass production was maximal at 200 mM NaCl, and the plants survived even when challenged with 1000 mM NaCl. Plant water status was not impaired by the high accumulation of sodium in shoots, suggesting that Na⁺ compartmentalization efficiently took place in vacuoles. Concentrations of Mg²⁺ and K⁺ in shoots were markedly lower in salt‐treated plants, while that of Ca²⁺ was less affected. Soluble‐sugar and chlorophyll concentrations were hardly affected by salinity, whereas proline concentration increased significantly in shoots of salt‐treated plants. Maximum quantum efficiency (F_v/F_m), quantum yield of PSII (Φ_PSII), and electron‐transport rate (ETR) were maximal at 200–300 mM NaCl. Both nonphotochemical quenching (NPQ) and photochemical quenching (qP) were salt‐independent. Interestingly, transferring the plants previously challenged with supraoptimal salinities (400–1000 mM NaCl) to the optimal salinity (200 mM NaCl) substantially restored their growth activity. Altogether, our results indicate that B. maritima is an obligate halophyte, requiring high salt concentrations for optimal growth, and surviving long‐term extreme salinity. Such a performance could be ascribed to the plant capability to use sodium for osmotic adjustment, selective absorption of K⁺ over Na⁺ in concomitance with the stability of PSII functioning, and the absence of photosynthetic pigment degradation.     

Drivers of bryophyte diversity allow implications for forest management with a focus on climate change

Understanding the major drivers of diversity in forests is crucial for ecologists, conservationists, and particularly forest managers. In most forested habitats, bryophytes are diverse and important primary producers. Here we report the first study of the relative importance of regional macroclimate as compared to local variables on abundance, species richness, and community composition of bryophytes growing in soil and in dead wood in a mountain temperate forest. Using PCA axes, we built predictor sets for macroclimate, microclimate, soil attributes, and dead wood availability. The explanatory power of each set was tested using variance partitioning. Abundance and species richness of soil bryophytes was best explained by microclimate, whereas the community composition did not distinctively differ between the environmental sets. In contrast, dead wood bryophyte abundance, species richness, and community composition was clearly driven by macroclimate. Among the single axes, the component represented best by soil moisture was the main driver for soil bryophyte abundance. In contrast, dead wood bryophyte abundance was mostly affected by components correlated with minimum global radiation and minimum temperatures as well as by the component represented by dead wood. The component represented by canopy openness was superior in explaining the community composition of both soil and dead wood bryophytes. We conclude that (1) dead wood amounts should be increased in closed stands to act as a buffer during climate changes, and (2) open canopy, which provides important habitats for soil-inhabiting bryophytes, should be provided by management with slow reforestation after natural or logging openings.     

The sulfur components of Allium species as flavoring matter

Gas chromatographic analysis of the headspace volatiles from various kinds ofAllium (onions) revealed the principal disulfides present as being: di-n-propyl, n-propyl allyl, methyl-n-propyl, methyl allyl, dimethyl and diallyl. These aliphatic disulfides appear to be one of the principal groups of compounds responsible for the aroma and flavor of onions. A procedure for the qualitative and quantitative determination of these compounds is discussed. Comparisons are made between disulfide composition of various species and also between fresh and dehydrated onion samples. The amounts of volatile disulfides lost on dehydration are discussed.     

Reconciling 14C and minirhizotron‐based estimates of fine‐root turnover with survival functions

The turnover of fine‐roots is a crucial component for the input of C to the soil. The amount of root litter input is depending on estimates of turnover times from different techniques. Turnover times from fine‐root cameras (minirhizotrons) often yield 75% higher root litter input estimates than turnover times estimated with the bomb‐radiocarbon signature of fine roots. We introduce a generic framework for the analysis of fine‐root ¹⁴C with different survival functions. So far, mostly an exponential function has been used to estimate the turnover time and mean age of fine roots. In the context of the introduced survival function framework we clarify the terms turnover time, mean residence time, mean longevity, and mean age, which are commonly used in studies of root turnover. Using a unique time series of fine‐root ¹⁴C (Fröberg 2012), we test if survival functions other than the exponential function are better in accordance with turnover‐time estimates commonly found with other methods. A survival function that corresponds to a two‐pool model was best in agreement with minirhizotron‐based estimates (mean residence time of 1.9 y). We argue that using fine‐root ¹⁴C and minirhizotron time‐to‐death data together would give the best constraints on fine‐root turnover. At the same time this could allow quantifying systematic biases inherent to both techniques.