Genomic analysis of PCV2 isolates from Danish archives and a current PMWS case-control study supports a shift in genotypes with time

Porcine circovirus type 2 (PCV2) is the primary cause of Postweaning Multisystemic Wasting Syndrome (PMWS) in pigs. PCV2, however, is found in both PMWS-affected herds and non-affected herds. The objective of this study was to clarify if PCV2 genome nucleotide sequences isolated from pigs from PMWS-affected herds and non-affected herds cluster phylogenetically in two separate groups. All isolates (45) belonged to PCV2 group 1 and shared a nucleotide sequence identity of 99.4-100% indicating a very homogeneous PCV2 population in Denmark. Phylogenetic analysis of the PCV2 isolates revealed no distinctive clustering of case- and control-herds suggesting that there is no link between PCV2 sequences and herd disease status. The appearance of only PCV2 group 1 isolates in this study (isolates from 2003/2004) led us to determine if PCV2 nucleotide sequences had changed in Denmark over time. Interestingly, all PCV2 isolates from before the first outbreak of PMWS (2001) belonged either to a new PCV2 group identified for the first time in this study and named group 3 (isolates from 1980, 1987 and 1990) or PCV2 group 2 (isolates from 1993 and 1996). The shift from PCV2 group 2 to 1 was confirmed on a more global scale by placing all full genome PCV2 sequences submitted to GenBank from 1997 to 2006 in either of the groups by phylogenetic analysis. The analysis showed that the shift happened in 2003 or even earlier. This may indicate that PCV2 group 1 is a more adapted form of PCV2 and possibly could be more pathogenic.     

Examination for a viral co-factor in postweaning multisystemic wasting syndrome (PMWS)

In order to test the hypothesis that a putative co-factor for the development of postweaning multisystemic wasting syndrome (PMWS) in pigs could be of viral origin, we performed extensive virological examinations on organ material from pigs diagnosed with PMWS originating from within a Danish PMWS-transmission study. Virus isolation attempts were carried out on a large panel of different cell types including primary pig kidney cells and lung macrophages, primary rabbit kidney cells and seven established cell lines (MARC-145, ST117, PK15, BHK21, HeLa, Vero, and MDCK). Although these represent cells with susceptibility to a wide range of known viruses, the results did not provide evidence for a specific virus other than PCV2 contributing to the development of PMWS. Furthermore, in order to test whether specific genotypes of PCV2 may trigger the switch from PCV2 infection to clinical disease, we compared complete DNA genome sequences of PCV2 derived from PMWS-positive as well as PMWS-negative pigs. On the basis of the DNA sequences, the PCV2 isolates were divided into two groups. Group 1 consisting of one isolate originating from a herd unaffected by PMWS, with group 2 consisting of nine isolates originating from four PMWS-affected herds, four PMWS-positive pigs plus one unaffected herd. The PCV2 genomes from the two groups showed 95.5% identity. Alignment analyses of the sequences encoding the replicase and capsid protein from group 1 and group 2 PCV2 isolates showed two amino acid differences encoded in the replicase protein, while 19 amino acid differences were predicted among the capsid protein sequences. The PCV2 DNA sequence analysis supports recent observations from studies in USA as well as Europe, which suggest that strain variations may influence the clinical outcome of PCV2 infection.     

Climate change impacts on forest landscapes along the Canadian southern boreal forest transition zone

Context

Forest landscapes at the southern boreal forest transition zone are likely to undergo great alterations due to projected changes in regional climate.

Objectives

We projected changes in forest landscapes resulting from four climate scenarios (baseline, RCP 2.6, RCP 4.5 and RCP 8.5), by simulating changes in tree growth and disturbances at the southern edge of Canada’s boreal zone.

Methods

Projections were performed for four regions located on an east–west gradient using a forest landscape model (LANDIS-II) parameterized using a forest patch model (PICUS).

Results

Climate-induced changes in the competitiveness of dominant tree species due to changes in potential growth, and substantial intensification of the fire regime, appear likely to combine in driving major changes in boreal forest landscapes. Resulting cumulative impacts on forest ecosystems would be manifold but key changes would include (i) a strong decrease in the biomass of the dominant boreal species, especially mid- to late-successional conifers; (ii) increases in abundance of some temperate species able to colonize disturbed areas in a warmer climate; (iii) increases in the proportions of pioneer and fire-adapted species in these landscapes and (iv) an overall decrease in productivity and total biomass. The greatest changes would occur under the RCP 8.5 radiative forcing scenario, but some impacts can be expected even with RCP 2.6.

Conclusions

Western boreal forests, i.e., those bordering the prairies, are the most vulnerable because of a lack of species adapted to warmer climates and major increases in areas burned. Conservation and forest management planning within the southern boreal transition zone should consider both disturbance- and climate-induced changes in forest communities.

     

The legacy of timber harvest: Do patterns of species dominance suggest recovery of lepidopteran communities in managed hardwood stands?

Patterns of local and regional dominance within species assemblages can be used to infer the legacy of disturbance in managed systems. Specifically, highly disturbed communities are expected to share the same dominant species across environmental gradients, while recovery from disturbance should be correlated with a differentiation among the dominant suite of species among sites. We tested this hypothesis using moth communities sampled from 20 forest stands within three watersheds managed for complete timber harvest 60 years prior. Specifically, we (1) compared the species-abundance distributions for all moths sampled from the forests, (2) used ordination and indicator species analysis to assess whether the same taxa were most dominant within each forest stand, and (3) tested whether dominant taxa were disproportionately niche generalists compared to all species sampled from the larger species pools within each watershed. With only a single significant exception, moth communities within the forest stands shared the log-normal species-abundance distribution. Ordination suggested some evidence of divergence in species dominance among individual forest stands, but differences were not based on watershed identity or spatial proximity. Few dominant species appeared to display a high level of fidelity to any particular stand or watershed in the region. Finally, dominant taxa were not disproportionately niche generalists, but this result was largely driven by the absence of niche specialists from the entire forested landscape. Thus, we suggest that the moth communities from this managed forest system still bear a clear legacy of timber management more than 60 years post-harvest. Shifts in dominant moth taxa among forest stands may be largely idiosyncratic in nature.     

Heritabilities and correlations of deformities and growth‐related traits in the European sea bass (Dicentrarchus labrax,L) in four different sites

Skeletal deformities are important traits for aquaculture as they induce slow growing and low market value. We studied their genetic determinism and their interactions with the environment at the ongrowing stage in 5839 European sea bass from a partial factorial mating of 33 sires and 23 dams, reared in four sites. All families were mixed, and fish were first reared in one site (site B) until 35 g mean weight, then distributed to the four sites. A posteriori reconstruction of pedigree with microsatellites was used. Deformities were scored internally at slaughtering, and externally from photographs. Site B, where all fish were initially stocked until 35 g and exposed to forced swimming because of fast water current showed the highest rate of deformities with 83% and 65% from internal and external scoring respectively. Heritability on the underlying scale was h² = 0.25 ± 0.03 across all sites, and varied little between sites, while genetic correlations of deformities between sites were always high (>0.85). Genetic correlations between deformities and daily growth coefficient were variable between sites(r_A = 0.50 ± 0.09, 0.43 ± 0.10, 0.32 ± 0.10, 0.18 ± 0.10 for sites A, B, C, D respectively) and were positively linked with the average growth rate in each site. These results pointed out that there could be a relation between growth rate and the evolution of deformities at the grow‐out stage.     

Characterization of the heat treatment undergone by milk using two inhibition ELISAs for quantification of native and heat denatured alpha-lactalbumin

Dairy industries are interested to know the heat treatment undergone by milk for controlling the quality of drinking milks or to control their heating systems. The purpose of this work was to develop a specific and sensitive technique for classification of the heat treatment a milk has been submitted to, without disposing of the original raw milk. For this purpose, alpha-lactalbumin was chosen as a bioindicator of heat treatment, and monoclonal antibodies specific for its native or heat-denatured form were raised and used in two inhibition ELISAs. ELISA allowed differentiation among raw, pasteurized, ultrahigh-temperature-treated, and sterilized milks without even having to know the alpha-lactalbumin concentration of the original raw milk. However, this technique was more suitable for intense heat treatments such as UHT treatment and sterilization because of the heat stability of alpha-lactalbumin.     

A simple dose-effect model of lake acidity in Québec (Canada)

A simple dose-effect model expressing the relationships between lake acidity, weighted mean annual sulfate concentration in wet deposition, Ca, Mg and true color (as an index of organic anion concentration) is presented. The agreement between observed and estimated pH for more than a 1000 lakes is high according to the Pearson coefficients of correlation (0.81 to 0.90) and the standard error of estimation (0.22 to 0.27 pH unit). Results obtained with this model show that an airborne sulfate target loading of 20 kg ha^?1 yr^?1 would be too high to adequately protect sensitive lake ecosystems. A target loading of 15 kg ha^?1 yr^?1 in wet deposition would be best suited for the protection of the greater portion of sensitive lakes. However, a target loading of 10 kg ha^?1 yr^?1 would be required to protect the most sensitive lake ecosystems.     

Determination of size distribution of fat globules in intravenous fat emulsions by photon correlation spectroscopy

A photon correlation spectroscopy method has been developed to characterize the size distribution of fat globules in intravenous fat emulsions (IFE) in terms of mean diameter, standard deviation of the distribution, and percentage of large particles outside the distribution. Mean fat globule diameters of samples of all IFE products available in Canada were about 0.3 microns, similar to values reported in the literature. The methodology is sufficiently sensitive to detect the presence of 5% by weight of 2 microns polystyrene microspheres in an intravenous fat emulsion. The effect of changes in instrument settings and variables on the results has been evaluated.