Diversity of the rodent communities in the Turan Desert region

We assessed the diversity of rodent communities in the deserts of Russia, Kazakhstan, and Central Asia using geographic information system technology. There are 66 species of rodents, belonging to eight faunistic complexes, inhabiting this area. We discuss the geographical changes occurring in taxonomic and zoogeographic diversity at both species and community levels. Communities of gerbils and jerboas dominate in the Turan Desert region (66% of the area). Steppe communities of susliks penetrate the deserts from the north. Farming in deserts causes the replacement of native rodent communities with mouse communities or completely eradicates rodents in their main habitats.     

Self-inhibition of spore germination via reactive oxygen in the fungus Cladosporium cucumerinum, causal agent of cucurbit scab

Cladosporium cucumerinum spore germination in vitro depended on spore suspension density. Different fungal isolates displayed germination maxima at different spore concentrations. For one isolate, the maximum was observed at the same spore density at both 18 and 25°C, although germination percentage increased slightly at the higher temperature. Diffusates originating in other spore suspensions of the same isolate reduced germination percentage of spores taken at optimal concentration. The least effect occurred in diffusate taken from spores kept at their optimal concentration. Self-suppression of spore germination at unfavourable concentrations was diminished more or less by antioxidants (superoxide dismutase, catalase, mannitol or formate). The same compounds, added to spore diffusates, reduced their fungitoxicities. All diffusates generated superoxide radical (assayed by adrenalin oxidation sensitive to superoxide dismutase). This activity correlated positively with diffusate toxicity. Leaf inoculation of the susceptible cucumber cultivar at 18°C with spore suspensions at extreme densities, at which they germinated poorly in vitro, led to less disease severity then that at optimal density. In contrast, no disease symptoms appeared at 25°C. It is suggested that spores germinating at their extreme concentrations produced reactive oxygen species, suppressing the pathogen; this effect could reduce disease development at low temperatures. At high temperatures, however, this mechanism seems not to work, suggesting that plant infection may be reduced by other disease inhibiting factors.     

Structure Elucidation and Functional Studies of a Novel β-hairpin Antimicrobial Peptide from the Marine Polychaeta Capitella teleta

Endogenous antimicrobial peptides (AMPs) are evolutionary ancient molecular factors of innate immunity that play a key role in host defense. Among the most active and stable under physiological conditions AMPs are the peptides of animal origin that adopt a β-hairpin conformation stabilized by disulfide bridges. In this study, a novel BRICHOS-domain related AMP from the marine polychaeta Capitella teleta, named capitellacin, was produced as the recombinant analogue and investigated. The mature capitellacin exhibits high homology with the known β-hairpin AMP family—tachyplesins and polyphemusins from the horseshoe crabs. The β-hairpin structure of the recombinant capitellacin was proved by CD and NMR spectroscopy. In aqueous solution the peptide exists as monomeric right-handed twisted β-hairpin and its structure does not reveal significant amphipathicity. Moreover, the peptide retains this conformation in membrane environment and incorporates into lipid bilayer. Capitellacin exhibits a strong antimicrobial activity in vitro against a wide panel of bacteria including extensively drug-resistant strains. In contrast to other known β-hairpin AMPs, this peptide acts apparently via non-lytic mechanism at concentrations inhibiting bacterial growth. The molecular mechanism of the peptide antimicrobial action does not seem to be related to the inhibition of bacterial translation therefore other molecular targets may be assumed. The reduced cytotoxicity against human cells and high antibacterial cell selectivity as compared to tachyplesin-1 make it an attractive candidate compound for an anti-infective drug design.     

Synthesis of the Oligosaccharides Related to Branching Sites of Fucosylated Chondroitin Sulfates from Sea Cucumbers

Natural anionic polysaccharides fucosylated chondroitin sulfates (FCS) from sea cucumbers attract great attention nowadays due to their ability to influence various biological processes, such as blood coagulation, thrombosis, angiogenesis, inflammation, bacterial and viral adhesion. To determine pharmacophore fragments in FCS we have started systematic synthesis of oligosaccharides with well-defined structure related to various fragments of these polysaccharides. In this communication, the synthesis of non-sulfated and selectively O-sulfated di- and trisaccharides structurally related to branching sites of FCS is described. The target compounds are built up of propyl β-d-glucuronic acid residue bearing at O-3 α-l-fucosyl or α-l-fucosyl-(1→3)-α-l-fucosyl substituents. O-Sulfation pattern in the fucose units of the synthetic targets was selected according to the known to date holothurian FCS structures. Stereospecific α-glycoside bond formation was achieved using 2-O-benzyl-3,4-di-O-chloroacetyl-α-l-fucosyl trichloroacetimidate as a donor. Stereochemical outcome of the glycosylation was explained by the remote participation of the chloroacetyl groups with the formation of the stabilized glycosyl cations, which could be attacked by the glycosyl acceptor only from the α-side. The experimental results were in good agreement with the SCF/MP2 calculated energies of such participation. The synthesized oligosaccharides are regarded as model compounds for the determination of a structure-activity relationship in FCS.     

Implementing urban greening aid projects – The case of St. Petersburg, Russia

Recent years have seen the introduction of the concept of urban greening, defined as embracing the planning and management of all urban vegetation to create or add values to the local community. Green-space development has become recognised by international agencies and donors as important tool in improving the quality of urban livelihoods and urban environment. This paper evaluates an example of an urban greening aid project, carried out by Danish and Russian partners in the city of St. Petersburg, Russia. The project aimed to contribute to conservation and development of the cultural–historical, social and ecological values of St. Petersburg's urban green areas by implementing a structured, socially inclusive, well-informed planning and management approach. The project had three main components: (1) the development of a GIS-based information system to assist green-space planning and management; (2) on-site improvements in selected green areas and (3) awareness raising and public involvement activities. Ex post evaluation of the project showed that in spite of the limits of time and resources, important results were achieved. A more strategic approach to urban green-space planning and management, as promoted by urban greening, was adapted by some of the Russian project partners. Achievements also included notable physical improvements to one park. But the main project impacts were improved communication and collaboration between the local park department and local academia, as well as expertise developed in running a complex urban greening project. The project failed, however, in its public involvement ambitions.Moreover, the project should have facilitated discussion on some of the current premises of urban green-space planning and management in St. Petersburg, which insufficiently consider changing values and public preferences related to green spaces.     

3D fluorescent in situ hybridization using Arabidopsis leaf cryosections and isolated nuclei

Background  

Fluorescent hybridization techniques are widely used to study the functional organization of different compartments within the mammalian nucleus. However, few examples of such studies are known in the plant kingdom. Indeed, preservation of nuclei 3D structure, which is required for nuclear organization studies, is difficult to fulfill.     

A New Hemoglobin in Cattle

A new type of cattle hemoglobin is found in animals of the African Muturu breed. It is called D, has a slower rate of migration than Hb A on starch gels and can be explained by the occurrence of a fourth allele Hb^D.     

Rodent burrow network dynamics under human‐induced landscape transformation from desert to steppe in Kalmykian rangelands

Rodents play an important role in rangelands through the engineering of extensive burrow systems, which provides key habitats for many animal and plant species. We have analyzed the long‐term variation in the abundance and distribution of rodent burrows in grazing ecosystems of southern Russia (Kalmykia) under the landscape change from desert to steppe caused by the drastic reduction of livestock after the collapse of the USSR in the early 1990s. We conducted burrow surveys in the “desert” (1980) and “steppe” (2017) periods on 19 3‐km transects. We found considerable changes in burrow abundance and distribution, as well as evidence of desert habitat fragmentation and isolation caused by the expansion of tall‐grass communities. Burrows of the open‐dwelling diurnal ground squirrel (Spermophilus pygmaeus), the dominant and the keystone species during the “desert” period, almost completely disappeared from the rodent burrow network by 2017, indicating significant habitat loss. In contrast, the burrows of the folivorous social vole (Microtus socialis) which was rare in the 1980s, became abundant and ubiquitously distributed. The burrow density of the desert‐dwelling psammophilous midday gerbil (Meriones meridianus) decreased, while the distances between occupied patches increased, indicating desert habitat fragmentation and loss of population connectivity. Burrows of the folivorous tamarisk gerbils (M. tamariscinus) were recorded only sporadically in both 1980 and 2017. The observed changes in the rodent burrow network, the key component of grazing ecosystems, correlate with rodent species ecology and can have long‐term and important consequences for ecosystem functioning.