Formalized classification of moss litters in swampy spruce forests of intermontane depressions of Kuznetsk Alatau

The approaches of multivariate statistics have been used for the numerical classification of morphogenetic types of moss litters in swampy spruce forests according to their physicochemical properties (the ash content, decomposition degree, bulk density, pH, mass, and thickness). Three clusters of moss litters— peat, peaty, and high-ash peaty—have been specified. The functions of classification for identification of new objects have been calculated and evaluated. The degree of decomposition and the ash content are the main classification parameters of litters, though all other characteristics are also statistically significant. The final prediction accuracy of the assignment of a litter to a particular cluster is 86%. Two leading factors participating in the clustering of litters have been determined. The first factor—the degree of transformation of plant remains (quality)—specifies 49% of the total variance, and the second factor—the accumulation rate (quantity)— specifies 26% of the total variance. The morphogenetic structure and physicochemical properties of the clusters of moss litters are characterized.     

Antitumor Properties of Epitope-Specific Engineered Vaccine in Murine Model of Melanoma

Finding new effective compounds of natural origin for composing anti-tumor vaccines is one of the main goals of antitumor research. Promising anti-cancer agents are the gastropodan hemocyanins–multimeric copper-containing glycoproteins used so far for therapy of different tumors. The properties of hemocyanins isolated from the marine snail Rapana thomasiana (RtH) and the terrestrial snail Helix aspersa (HaH) upon their use as carrier-proteins in conjugated vaccines, containing ganglioside mimotope GD3P4 peptide, were studied in the developed murine melanoma model. Murine melanoma cell line B16F10 was used for solid tumor establishment in C57BL/6 mice using various schemes of therapy. Protein engineering, flow cytometry, and cytotoxicity assays were also performed. The administration of the protein-engineered vaccines RtH-GD3P4 or HaH-GD3P4 under the three different regimens of therapy in the B16F10 murine melanoma model suppressed tumor growth, decreased tumor incidence, and prolonged the survival of treated animals. The immunization of experimental mice induced an infiltration of immunocompetent cells into the tumors and generated cytotoxic tumor-specific T cells in the spleen. The treatment also generates significantly higher levels of tumor-infiltrated M1 macrophages, compared to untreated tumor-bearing control mice. This study demonstrated a promising approach for cancer therapy having potential applications for cancer vaccine research.     

Differential induction of redox sensitive extracellular phenolic amides in potato

This study focuses on the differential induction of extracellular phenolic amides that accumulate in potato cell suspensions during the first few hours of the interaction between these plant cells and either bacterial pathogens or pathogen-related elicitors. Using suspension cells of Solanum tuberosum we identified 4 hydroxycinnamic acid amides that accumulate in the extracellular environment. Treatment of the suspension cells with pathovars of the plant pathogens Pseudomonas syringae or Ralstonia solanacearum or with pathogen-related elicitors changed the composition of the extracellular phenolic amides within hours and the composition differed for each treatment. Some of the phenolic amides were sensitive to oxidative stress; when suspension cells were treated with bacterial strains or elicitors that triggered an oxidative burst, the phenolics were oxidized and depleted for the duration of the burst. Other critical parameters that affected the qualitative and quantitative makeup of these phenolic amides were plant cell age and density.     

A Collagen Basketweave from the Giant Squid Mantle as a Robust Scaffold for Tissue Engineering

The growing applications of tissue engineering technologies warrant the search and development of biocompatible materials with an appropriate strength and elastic moduli. Here, we have extensively studied a collagenous membrane (GSCM) separated from the mantle of the Giant squid Dosidicus Gigas in order to test its potential applicability in regenerative medicine. To establish the composition and structure of the studied material, we analyzed the GSCM by a variety of techniques, including amino acid analysis, SDS-PAGE, and FTIR. It has been shown that collagen is a main component of the GSCM. The morphology study by different microscopic techniques from nano- to microscale revealed a peculiar packing of collagen fibers forming laminae oriented at 60–90 degrees in respect to each other, which, in turn, formed layers with the thickness of several microns (a basketweave motif). The macro- and micromechanical studies showed high values of the Young’s modulus and tensile strength. No significant cytotoxicity of the studied material was found by the cytotoxicity assay. Thus, the GSCM consists of a reinforced collagen network, has high mechanical characteristics, and is non-toxic, which makes it a good candidate for the creation of a scaffold material for tissue engineering.     

Iron isotope constraints on the Archean and Paleoproterozoic ocean redox state

The response of the ocean redox state to the rise of atmospheric oxygen about 2.3 billion years ago (Ga) is a matter of controversy. Here we provide iron isotope evidence that the change in the ocean iron cycle occurred at the same time as the change in the atmospheric redox state. Variable and negative iron isotope values in pyrites older than about 2.3 Ga suggest that an iron-rich global ocean was strongly affected by the deposition of iron oxides. Between 2.3 and 1.8 Ga, positive iron isotope values of pyrite likely reflect an increase in the precipitation of iron sulfides relative to iron oxides in a redox stratified ocean.     

Cross-reactivity of commercially available anti-human monoclonal antibodies with canine cytokines: establishment of a reliable panel to detect the functional profile of peripheral blood lymphocytes by intracytoplasmic staining

Background

The process for obtaining monoclonal antibodies against a specific antigen is very laborious, involves sophisticated technologies and it is not available in most research laboratories. Considering that most cytokines remain partially conserved among species during evolution, the search for antibody cross-reactivity is an important strategy for immunological studies in veterinary medicine. In this context, the amino acid sequence from human and canine cytokines have demonstrated 49–96 % homology, suggesting high probability of cross-reactivity amongst monoclonal antibodies. For this, 17 commercially available anti-human monoclonal antibodies [IL-1α, IL-1β, IL-2, IL-4, IL-5, IL-6, IL-8 (#1, #2), IL-10, IL-12, IL-13, IL-17A, IFN-γ (#1, #2), TNF-α (#1, #2) and TGF-β], were evaluated in vitro for intracellular cytokine detection in a stimulated canine blood culture by flow cytometry and confocal microscopy. Lymphocytes from peripheral blood of healthy and two unhealthy dogs were analyzed.

Results

Eleven anti-human mAbs [IL-1α, IL-4, IL-5, IL-6, IL-8 (#1, #2), IL-12, IL-17A, TNF-α (#1, #2) and TGF-β] cross-reacted against canine intracellular cytokines. The specificity of the assays was not affected after Fc-blocking. Three anti-human cytokine mAbs [IL-4, IL-8 (#2) and TGF-β] when evaluated by confocal microscopy also cross-reacted with intracellular canine cytokines. The identification of human mAbs that cross-reacted with canine cytokines may support their use as immunological biomarkers in veterinary medicine studies.

Conclusion

The identification of these 11 anti-human cytokine mAbs that cross-reacted with canine cytokines will be useful immunological biomarkers for pathological conditions by flow cytometry and fluorescence microscopy in dogs.     

SSR markers as tools to reveal mutation events in Scots pine (Pinus sylvestris L.) from Chernobyl

Microsatellites (SSRs) were surveyed to detect somatic mutations caused by chronic irradiation in Pinus sylvestris from Chernobyl (Ukraine). The analysed trees grow close to the exploded nuclear power plant. They survived the accident, but show morphological anomalies and reduced growth and vitality. Ionising radiation is a known mutagen which causes double-strand breaks of DNA in all living organisms. Using six SSR markers, one tree was found in which a mutation (deletion) was detected at the gene locus SPAG 7.14.     

On concentration footprints for a tall tower in the presence of a nocturnal low-level jet

This paper reports on the location of sources contributing to a point concentration measurement in the stable boundary layer. Concentration footprints for sensors located at different heights during the night are examined using a backward-in-time Lagrangian stochastic dispersion model. Simulations of air parcel transport in a non-steady-state atmospheric boundary layer above a bare surface and a forest under different insolation suggest that sources located as far as several hundred kms away contribute to a concentration measurement made at levels as high as 500 m. The origin of the maximal contribution area shifts during the night depending on the wind direction at the sensor location, a feature most prominent in the presence of decoupling between sensor levels and surface sources. Simulations suggest that atmospheric static stability alone is not a sufficient criterion to trigger flow decoupling. The presence of the low-level jet provides vertical mixing of air parcels even for stable boundary layers with Richardson numbers higher than the critical. This finding is in agreement with earlier observations suggesting that the level of the low-level jet nose acts as a strong lid prohibiting vertical gas propagation. These findings have important implications in the interpretation of eddy-flux measurements in nocturnal conditions.     

Glaciers dominate eustatic sea-level rise in the 21st century

Ice loss to the sea currently accounts for virtually all of the sea-level rise that is not attributable to ocean warming, and about 60% of the ice loss is from glaciers and ice caps rather than from the two ice sheets. The contribution of these smaller glaciers has accelerated over the past decade, in part due to marked thinning and retreat of marine-terminating glaciers associated with a dynamic instability that is generally not considered in mass-balance and climate modeling. This acceleration of glacier melt may cause 0.1 to 0.25 meter of additional sea-level rise by 2100.     

Spatial hierarchical variances and age covariances for seroprevalence to Leptospira interrogans serovar hardjo, BoHV-1 and BVDV for cattle in the State of Paraíba, Brazil

We estimated spatial hierarchal variances and age-group covariances for seroprevalence to Leptospira interrogans serovar hardjo (LeptoH), bovine viral-diarrhea virus (BVDV) and bovine herpesvirus type 1 (BoHV-1) among 2343 cattle from 72 properties sampled in the State of Paraíba, Brazil in 2000. From each property, eight animals in each of the four age categories were evaluated. The age categories studied were: pre-weaned (0–6 months), young (7–18 months), replacement (19–30 months) and mature (>30 months). Overall seroprevalence to LeptoH was 16.0% and showed clustering at all levels of the spatial hierarchy and had a high posterior probability of being negatively correlated between replacement and mature groups within herds. Seroprevalence to BoHV-1 was 46.6% and demonstrated very little clustering among levels of the spatial hierarchy and was positively correlated between young and replacement groups within herds. Seroprevalence to BVD was 22.2% and was strongly clustered within herds and was positively correlated between young and replacement age groups within herds.