Response of benthic fauna to experimental bottom fishing: A global meta‐analysis

Bottom‐contact fishing gears are globally the most widespread anthropogenic sources of direct disturbance to the seabed and associated biota. Managing these fishing disturbances requires quantification of gear impacts on biota and the rate of recovery following disturbance. We undertook a systematic review and meta‐analysis of 122 experiments on the effects‐of‐bottom fishing to quantify the removal of benthos in the path of the fishing gear and to estimate rates of recovery following disturbance. A gear pass reduced benthic invertebrate abundance by 26% and species richness by 19%. The effect was strongly gear‐specific, with gears that penetrate deeper into the sediment having a significantly larger impact than those that penetrate less. Sediment composition (% mud and presence of biogenic habitat) and the history of fishing disturbance prior to an experimental fishing event were also important predictors of depletion, with communities in areas that were not previously fished, predominantly muddy or biogenic habitats being more strongly affected by fishing. Sessile and low mobility biota with longer life‐spans such as sponges, soft corals and bivalves took much longer to recover after fishing (>3 year) than mobile biota with shorter life‐spans such as polychaetes and malacostracans (<1 year). This meta‐analysis provides insights into the dynamics of recovery. Our estimates of depletion along with estimates of recovery rates and large‐scale, high‐resolution maps of fishing frequency and habitat will support more rigorous assessment of the environmental impacts of bottom‐contact gears, thus supporting better informed choices in trade‐offs between environmental impacts and fish production.     

Ciliary photoreceptors with a vertebrate-type opsin in an invertebrate brain

For vision, insect and vertebrate eyes use rhabdomeric and ciliary photoreceptor cells, respectively. These cells show distinct architecture and transduce the light signal by different phototransductory cascades. In the marine rag-worm Platynereis, we find both cell types: rhabdomeric photoreceptor cells in the eyes and ciliary photoreceptor cells in the brain. The latter use a photopigment closely related to vertebrate rod and cone opsins. Comparative analysis indicates that both types of photoreceptors, with distinct opsins, coexisted in Urbilateria, the last common ancestor of insects and vertebrates, and sheds new light on vertebrate eye evolution.     

Choosing best practices for managing impacts of trawl fishing on seabed habitats and biota

Bottom trawling accounts for almost one quarter of global fish landings but may also have significant and unwanted impacts on seabed habitats and biota. Management measures and voluntary industry actions can reduce these impacts, helping to meet sustainability objectives for fisheries, conservation and environmental management. These include changes in gear design and operation of trawls, spatial controls, impact quotas and effort controls. We review nine different measures and actions and use published studies and a simple conceptual model to evaluate and compare their performance. The risks and benefits of these management measures depend on the extent to which the fishery is already achieving management objectives for target stocks and the characteristics of the management system that is already in place. We offer guidance on identifying best practices for trawl‐fisheries management and show that best practices and their likelihood of reducing trawling impacts depend on local, national and regional management objectives and priorities, societal values and resources for implementation. There is no universal best practice, and multiple management measures and industry actions are required to meet sustainability objectives and improve trade‐offs between food production and environmental protection.     

The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist

The adenosine class of heterotrimeric guanine nucleotide-binding protein (G protein)-coupled receptors (GPCRs) mediates the important role of extracellular adenosine in many physiological processes and is antagonized by caffeine. We have determined the crystal structure of the human A2A adenosine receptor, in complex with a high-affinity subtype-selective antagonist, ZM241385, to 2.6 angstrom resolution. Four disulfide bridges in the extracellular domain, combined with a subtle repacking of the transmembrane helices relative to the adrenergic and rhodopsin receptor structures, define a pocket distinct from that of other structurally determined GPCRs. The arrangement allows for the binding of the antagonist in an extended conformation, perpendicular to the membrane plane. The binding site highlights an integral role for the extracellular loops, together with the helical core, in ligand recognition by this class of GPCRs and suggests a role for ZM241385 in restricting the movement of a tryptophan residue important in the activation mechanism of the class A receptors.     

Sediment and society: an approach for assessing management of contaminated sediments and stakeholder involvement in Norway

Introduction

Management options for large-scale contaminated sediment remediation projects can be challenging with regard to competing stakeholder interests. This has become apparent during the Oslofjord sediment remediation project (2005–2009) which caused considerable public discussion.

Background

To learn from this project, the ‘Sediment and society’ project was initiated to develop a collaborative approach that will incorporate local and scientific knowledge in order to achieve mutual gains, win-win outcomes for the stakeholders, in the management of contaminated marine sediments.

Method development

The project focuses on two Norwegian harbours: Oslo Harbour and Bergen Harbour. The Oslo Harbour case has been analysed ex-post, using elements of risk governance: participation, communication, information/knowledge and risk perception. The Bergen Harbour case is focused on the establishment of a citizens' jury as well as a stakeholder panel in Bergen Harbour.

Preliminary results and observations

Thus far, the results suggest three important commonalities or challenges for stakeholder involvement: (1) how to include people who have important management information and local knowledge, but not much influence in the decision-making process; (2) how to secure resources to ensure participation and (3) how to engage and motivate stakeholders to participate early in the sediment remediation planning process.     

Structural basis for allosteric regulation of GPCRs by sodium ions

Pharmacological responses of G protein-coupled receptors (GPCRs) can be fine-tuned by allosteric modulators. Structural studies of such effects have been limited due to the medium resolution of GPCR structures. We reengineered the human A(2A) adenosine receptor by replacing its third intracellular loop with apocytochrome b(562)RIL and solved the structure at 1.8 angstrom resolution. The high-resolution structure allowed us to identify 57 ordered water molecules inside the receptor comprising three major clusters. The central cluster harbors a putative sodium ion bound to the highly conserved aspartate residue Asp(2.50). Additionally, two cholesterols stabilize the conformation of helix VI, and one of 23 ordered lipids intercalates inside the ligand-binding pocket. These high-resolution details shed light on the potential role of structured water molecules, sodium ions, and lipids/cholesterol in GPCR stabilization and function.     

Resistance to <Emphasis Type="Italic">Bemisia tabaci</Emphasis> in tomato wild relatives

Bemisia tabaci is one of the most threatening pests in agriculture, particularly in Solanaceous crops such as tomato and pepper that are cultivated in the open field. Pesticide application is often not effective and hazardous to humans and environment. The exploitation of plant natural defenses that are present in wild relatives of tomato, may offer a solution. To evaluate resistance parameters and to identify plant material with high levels of resistance, we screened a number of accessions of tomato wild relatives using three methods; a free-choice test in a screenhouse in Indonesia, a no-choice test with clip-on cages in a greenhouse and a leaf disc test in a climate-room in the Netherlands. Antibiosis resulting in low adult survival was the major component for resistance in tomato. However, other resistance component(s) may play a role as well. In some accessions there was a change in the resistance level over time. Several resistance parameters used in the different tests were well correlated. The best resistance source was an accession of Solanum galapagense, which had not been identified as being resistant in the past. This is of particular interest as this species is closely related to the cultivated tomato, which may facilitate introgression of the resistance component(s). Whitefly non-preference and resistance were associated with the presence of type IV trichomes. Other mechanisms might be involved since some accessions without type IV trichomes showed low nymphal density. The leaf disc test is a good in vitro alternative for the clip-on cage whitefly resistance screening, as shown by the high correlation between the results obtained with this test and the clip-on cage test. This offers breeders the possibility to carry out tests more efficiently.     

Elimination of terrestrial rabies in Germany using oral vaccination of foxes

Oral rabies vaccination (ORV) has become the method of choice in fox rabies control in Europe. During the past three decades fox-mediated rabies virtually disappeared from Western and Central Europe. Following Switzerland, Germany was the second European country to launch ORV field trials on its territory in 1983. This paper provides a historical overview on the emergence of fox rabies in Germany; describing the basic principles and milestones of the German rabies eradication programme and presenting results of two decades of efforts to control the disease in foxes. Also, setbacks as well as country-specific differences and particularities on Germany's long way to rabies elimination in comparison to other European countries are addressed. Since the first field trials in Germany the number of rabies cases steadily decreased from 10 484 in 1983 to three cases recorded in 2006. On February 3rd 2006 the last case of terrestrial rabies in Germany was detected in a fox near the town of Mainz, Rhineland-Palatinate. In 2008, ORV ceased after 25 years and Germany was officially declared as free from terrestrial rabies. The German rabies eradication programme did cost approximately 100 million euro of which 37 million euro were covered by the EU. For the future, efforts should focus on maintaining a rabies free status by implementing measures to prevent reintroduction of terrestrial rabies from endemic countries.     

Diastereomer-selective resistance in Cladosporium cucumerinum to triazole-type fungicides

Diastereomers of triazole-type fungicides behaved differently with respect to their fungitoxicity towards wild-type strains of Cladosporium cucumerinum and strains resistant to ergosterol biosynthesis inhibitors. With increasing resistance to the fungicide ‘as a whole’, the difference in resistance to the two diastereomers of triadimenol became progressively smaller, whereas for the other triazole derivatives, this difference became progressively larger. The possible consequences of such phenomena for the practical use of diastereomeric fungicides are discussed.