Cardiomyopathy syndrome in Atlantic salmon Salmo salar L.: A review of the current state of knowledge

Cardiomyopathy syndrome (CMS) is a severe cardiac disease affecting Atlantic salmon Salmo salar L. The disease was first recognized in farmed Atlantic salmon in Norway in 1985 and subsequently in farmed salmon in the Faroe Islands, Scotland and Ireland. CMS has also been described in wild Atlantic salmon in Norway. The demonstration of CMS as a transmissible disease in 2009, and the subsequent detection and initial characterization of piscine myocarditis virus (PMCV) in 2010 and 2011 were significant discoveries that gave new impetus to the CMS research. In Norway, CMS usually causes mortality in large salmon in ongrowing and broodfish farms, resulting in reduced fish welfare, significant management‐related challenges and substantial economic losses. The disease thus has a significant impact on the Atlantic salmon farming industry. There is a need to gain further basic knowledge about the virus, the disease and its epidemiology, but also applied knowledge from the industry to enable the generation and implementation of effective prevention and control measures. This review summarizes the currently available, scientific information on CMS and PMCV with special focus on epidemiology and factors influencing the development of CMS.     

Native woody species regeneration in exotic tree plantations at Munessa-Shashemene Forest,southern Ethiopia

Regeneration of native woody species was studied in the plantations and the adjacent natural forest at Munessa-Shashemene Forest Project Area, Ethiopia. The aim of the study was to test the hypothesis that tree plantations foster regeneration of native woody species. A total of 60 plots, having 10 × 10 m area each, were studied in monoculture plantations of 4 exotic species (Cupressus lusitanica, Eucalyptus globulus, E. saligna, Pinus patula) and an adjacent natural forest. Ages of the plantations ranged between 9 and 28 years. Soil seed bank analysis was also undertaken from soil samples collected in each of the 60 plots to examine the similarity between the soil seed flora and aboveground vegetation. A total of 56 naturally regenerated woody species were recorded beneath all plantation stands with densities ranging between 2300 and 18650 individuals / ha in different stands. There was a significant difference among plantation stands with regard to understorey density (standard deviation: 4836 ± 1341). Vegetation diversity was assessed through analyses of floristic composition, species richness and abundance. Generally, seedling populations were the most abundant components of the regeneration in most of the plantation stands, forming 68 % of the total regeneration count in all stands. A total of 77 plant species represented by 44 herbs, 13 woody species, 8 grasses and 12 unidentified species were recorded in the soil seed bank from all stands. Similarity between the soil seed bank and aboveground flora was very low implying that the role of soil seed banks is negligible rather dispersal plays an important role in the process of regeneration. These results support the concept that forest plantations can foster the regeneration of native woody species, thereby increasing biological diversity, provided that there are seed sources in the vicinity of the plantations.     

Growth and intestinal morphology in cobia (Rachycentron canadum) fed extruded diets with two types of soybean meal partly replacing fish meal

Juvenile cobias, Rachycentron canadum, were fed extruded diets containing toasted defatted soybean meal (SBM) or untoasted defatted SBM [white flakes (WF)] to study growth and feed conversion, and to study if SBM induces morphological changes in the gastrointestinal (GI) tract. Three diets were produced: a fish meal‐based control diet (FM diet) with 558 g FM kg^?1, and two diets with 335 g FM and either 285 g SBM kg^?1 (SBM diet) or 285 g WF kg^?1 (WF diet). The diets were extruded at approximately 120°C with 280 g kg^?1 moisture. Triplicate groups of cobias (mean weight: 25.9 g) were fed the diets during 6 weeks. Feed intake of the FM and SBM diets were not significantly different, whereas the cumulative feed intake of cobias fed the WF diet was lower (P < 0.05) than that of cobias fed the FM and SBM diets after the first 21‐day period. Specific growth rate and feed conversion ratio were not significantly different between cobias fed the FM and SBM diets, but significantly poorer results were obtained in cobias fed the WF diet. No morphological differences in the GI tract could be attributed to the diets, and cobias fed soy did not develop enteritis in the distal intestine.     

Genetic variation and associations involving Fusarium head blight and deoxynivalenol accumulation in cultivated oat (Avena sativa L.)

Resistance in oats (Avena sativa L.) to Fusarium graminearum was phenotyped in 424 spring oat lines from North America and Scandinavia and genotyped with 2974 SNP markers. Fusarium head blight (FHB), deoxynivalenol (DON) content, days to flowering (DTF) and days to yellow maturity (DTM) were scored in field trials in 2011–12. Trials with phenotypic ranges from 1 to 30 ppm, and sufficient accuracy were obtained by an augmented design and spawn inoculation. Discriminant analysis–PCA identified the different gene pools, with overlaps corresponding to known pedigrees and germplasm exchanges. Structure was negligible and GWAS (genomewide association study) was done using mixed linear models in TASSEL or partial least‐squares regression (PLSR). PLSR allows simultaneous analyses of several phenotypes (environments and/or traits) and is a promising tool for GWAS in plants and should be tested in species with sequenced genomes. FHB was associated with phenology QTLs, due to very susceptible early lines from the Midwest. Lines with consistently low DON (and early heading) were identified. Six QTLs for DON were not associated with earliness, including three QTLs reported previously.     

Kinetics of single and dual infection of calves with an Asian atypical bovine pestivirus and a highly virulent strain of bovine viral diarrhoea virus 1

Atypical bovine pestiviruses related to bovine viral diarrhoea virus (BVDV) have recently been detected in cattle from South America, Asia and Europe. The purpose of this study was to compare the clinical and virological aspects of dual infection with BVDV-1 (Horton 916) and an Asian atypical bovine pestivirus (Th/04_KhonKaen) in na?ve calves, in comparison to single infections. Milder clinical signs were observed in the animals infected with single Th/04_KhonKaen strain. Leukocytopenia and lymphocytopenia were observed in all infected groups at a similar level which correlated with the onset of viraemia. Co-infection with both viruses led to prolonged fever in comparison to single strain inoculated groups and simultaneous replication of concurrent viruses in blood and in the upper respiratory tract. Following the infections all the calves seroconverted against homologous strains. Atypical pestiviruses pose a serious threat to livestock health and BVDV eradication, since they may have the potential to be widely spread in cattle populations without being detected and differentiated from other BVDV infections.     

Effect of fine wood on juvenile brown trout behaviour in experimental stream channels

In‐stream wood can increase shelter availability and prey abundance for stream‐living fish such as brown trout, Salmo trutta, but the input of wood to streams has decreased in recent years due to harvesting of riparian vegetation. During the last decades, fine wood (FW) has been increasingly used for biofuel, and the input of FW to streams may therefore decrease. Although effects of in‐stream FW have not been studied as extensively as those of large wood (LW), it is probably important as shelter for small‐sized trout. In a laboratory stream experiment, we tested the behavioural response of young‐of‐the‐year wild brown trout to three densities of FW, with trout tested alone and in groups of four. Video recordings were used to measure the proportion of time allocated to sheltering, cruising and foraging, as well as the number of aggressive interactions and prey attacks. Cruising activity increased with decreasing FW density and was higher in the four‐fish groups than when fish were alone. Foraging decreased and time spent sheltering in FW increased with increasing FW density. Our study shows that juvenile trout activity is higher in higher fish densities and that trout response to FW is related to FW density and differs from the response to LW as reported by others.     

Cryptosporidium parvum Caused a Large Outbreak Linked to Frisée Salad in Finland, 2012

Over 250 individuals fell ill in five outbreaks caused by Cryptosporidium parvum in Finland, October–November 2012. The cases were connected by lunch meals at restaurants in four different cities. In two outbreaks, the same C. parvumIIdA17G1 subtype was found in patients’ stool samples which supports a single source of infection. Frisée salad was the only common food item served at the restaurants, and consumption of lunch salad containing the frisée salad was associated with the illness. Lunch customers who responded that they had eaten lunch salad were three times more likely to have become ill than those who had not answered whether they had eaten the salad or not (RR 2.66; 95% Cl 1.02–6.9, P‐value <0.01). Cryptosporidiosis should be considered as a causal agent in long‐lasting watery diarrhoea combined with abdominal cramps, and clinical samples should be tested for Cryptosporidium at the same time bacteria and viruses are tested. Measures to prevent contamination of ‘ready‐to‐eat vegetables’ with Cryptosporidium oocysts and methods to test frozen food samples should be developed.     

Quality of rolled barley flakes as affected by batch of grain and processing technique

Rolled barley flakes were prepared from three different batches of grain by pearling, steaming and rolling. Autoclaved and malted barleys from the three batches were also processed in the same way. Analysis of the nine products showed that both batch of barley and process had significant effects on chemical composition and viscosity. Puddings were prepared from the products and mechanical consistency, juiciness and grain consistency were graded on both newly prepared and heated puddings by a sensory taste panel. Batch of barley had no effect on mechanical consistency but significant effects on juiciness and grain consistency. Type of processing had significant effect on all three parameters for both newly prepared and heated puddings.     

Characterisation of transgenic oilseed rape expressing pea lectin in anthers for improved resistance to pollen beetle

In order to evaluate pea lectin as a resistance factor against the pollen beetle (Meligethes aeneus), transgenic oilseed rape (Brassica napus) has been produced wherein the pea lectin gene expression is driven by a pollen-specific promoter. The aim of the present study was to identify and characterise non-segregating transgenic and non-transgenic lines to be compared in various future tests for benefits and risks associated with such transgenic crop plants. Three doubled haploid (DH) populations (1436, 1440 and 1451) expected to include lectin-producing lines and two DH populations (1443 and 1449) expected to be free of lectin were produced. All five populations originated from different transformation events in the cultivar Westar. The relative amounts of DNA from the marker gene cassette were quantified by conventional as well as real-time PCR analyses and lectin concentrations were estimated by western blot analysis. Two populations with high lectin concentrations, 1436 and 1451, contained higher amounts of the marker DNA and thus more lectin gene copies as compared with 1440 which had lower concentrations of the lectin. As expected all DH lines from 1443 and 1449 were free of lectin. Maximum pea lectin concentration obtained corresponded to 3% of total soluble protein in the anthers. There were significant differences between the populations with respect to bud and flowering stage phenology as well as seed yields, but the differences were not related to their transgenic status. All in all there were 171 lines tested for phenology and transgenic status, out of which 89 with similar phenology were subjected to tests for lectin concentration and seed yield, and 20 of these lines were retested in the next generation. Finally two lines with high lectin concentrations and one with an intermediate level along with two matching non-transgenic lines were selected for future benefit/risk experiments.