Molecular characterization of a Squalene epoxidase gene in dermatophyte pathogen Trichophyton tonsurans

BACKGROUND: Trichophyton tonsurans is one of the dermatophyte fungi which invades the skin and hair of human. Several properties of this fungus have been investigated so far. However a few studies were carried out in the field of molecular biology of this fungus. In the present study, we tried to identify the Squalene epoxidase gene which is related to synthesis of ergosterol in this fungus. METHODS: Pairs of 23 and 24 nucleotides primers were designed from highly conserved regions of the similar genes in other fungi. Mentioned primers were utilized in PCR by using isolated genomic DNA of T. tonsurans whereas the PCR fragments were then sequenced. RESULTS AND CONCLUSION: Nucleotides (n = 558) have been sequenced from this new gene which encodes a polypeptide with 186 amino acids. Sequences comparison in gene data banks (NCBI, NIH) for this part of DNA and its deduced amino acid revealed significant homology with members of the eukaryotic Squalene epoxidase.     

Wastewater Irrigation Effect on Soil,Crop and Environment: a Pilot Scale Study at Irbid,Jordan

An investigation was carried out at pilot scale to test the feasibility of using the effluent of a rotating biological contactors (RBC) unit treating wastewater generated from a university campus. The objective of the study was to cerefully monitor the impact of wastewater irrigation on the soil, percolating water, crop growth and the pathogenic condition within the immediate vicinity of wastewater application. Experimental plots with three crops: alfalfa, radish and tomato were irrigated with fresh and waste waters. The irrigation water was applied by sprinklers. Each crop was given two sub-treatments: with fertilizer and without fertilizer. The physical and chemical properties of the soil, the crop yields, and subsurface drainage were measured. In most of the cases, the yields resulted from the uses of wastewater with fertilizer were compatible with those of the uses of freshwater with fertilizer. The washings of tomato fruits grown with wastewater were analyzed for fecal coliforms. It appeared that the fruit skins were free of viable fecal coliforms 24 hours after the wastewater application. Subsurface drainage analyses did not show any alarming levels of constituents irrespective of the source of the water: wastewater or freshwater. The wastewater irrigation applied for a season had no significant effect on a silty loam soil. With wastewater irrigation, slught changes in the soil porosity and salinity were observed.     

Inducing salt tolerance in strawberry (Fragaria × ananassa Duch) plants by acetate application

Abstract

Acetate, can be considered as an appropriate interface for increasing tolerance to salinity stress in strawberries. Strawberry plants were exposed to different treatments including control (Hoagland solution), salinity (40?mM NaCl), acetic acid (AA) (1?mM), acetic acid (1?mM) + salinity (AAS), ammonium acetate (AA) (1?mM), ammonium acetate (AM) (1?mM) + salinity (AMS), ammonium carbonate (AC) (0.5?mM), and ammonium carbonate (0.5?mM) + salinity (ACS) and put them in hydroponic system. The results indicated that salinity reduced shoot dry weight about 80.12% when compared with untreated control plants. That in comparison to acetate treatments, this reduction was 47.13 and 48.77% in AAS and AMS, respectively. Leaf area was decrease 59% in salinity treatment but this reduction was 14% in AAS. The AAS and AMS were most effective in increasing fruit yields (35.93 and 52.16?g per plant, respectively) in comparison to salinity treatment alone (27.23?g per plant) condition. In saline conditions, the highest amount of soluble carbohydrate was observed in AMS treatment (9.67?mg g^?1 DW) that there was no significant difference with AAS treatment. Increase in Na⁺ and Cl^? accumulation in shoots and decreased in K⁺ in saline condition were observed. The highest amount of potassium was observed in acetate treatments. The present results have demonstrated that acetate could improve tolerance to the salinity, yield and plants growth in strawberry. But, in comparison to AA and AM treatments, better results were observed in AA treatment in both salinity and non-salinity conditions.     

Determination of antibiotic resistance pattern and virulence genes in Escherichia coli isolated from bovine with subclinical mastitis in southwest of Iran

The aims of the present study were to investigate the prevalence of some virulence genes and also determine the antimicrobial resistance pattern of E. coli isolated from bovine with subclinical mastitis. The milk of 502 cows was collected from 8 dairy herds in the southwest of Iran. Conventional biochemical tests were used for identification of E. coli at the species level. Antimicrobial susceptibility patterns of E. coli isolates were determined by disc agar diffusion method and polymerase chain reaction (PCR) was used for detection of seven virulence genes including f17A, afaE-8, afaD-8, eaeA, cnf1, cnf2, and iucD. Seventy (13.94%) isolates of E. coli were identified in 502 milk samples. The highest rate of resistance was observed against tetracycline (18.6%), while none of the isolates were resistant to streptomycin. Eight (11.5%) out of 70 E. coli isolates carried at least one of the virulence genes. The afaD-8 was the most prevalent gene detected in 5 (7.1%) isolates. The afaE-8, iucD, and eaeA were detected in 3, 3, and 2 isolates respectively. Low prevalence of virulence factors may be indicating that most of the E. coli isolates originated from the commensal flora of cows and enter to the udders via environment contamination with feces.

     

A review on prolificacy genes in sheep

Ovulation rate and litter size are important reproduction traits in sheep and are of high economic value. Reproduction traits typically have low to medium heritabilities and do not exhibit a noticeable response to phenotypic selection. Therefore, inclusion of genetic information of the genes associated with reproductive ability could efficiently enhance the selection response. The most important major genes affecting prolificacy and their genetic diversities in different sheep breeds were reviewed. Different causative mutations with major effects on reproductive traits including ovulation rate and litter size have been found in various sheep breeds around the world. A general overview of the studies on main prolificacy genes showed that some alleles may express different phenotypic effects in different breeds, and thus, further studies on epistatic effects are necessary for more understanding of genetic control of reproductivity in sheep. Regarding the polygenic control of fertility traits, application of new high‐throughput technologies to find new variants is essential for future studies. Moreover, genomewide association studies and genomic best linear unbiased predictions of breeding values are likely to be effective tools for genetic improvement of sheep reproductive performance traits.     

Values,technologies, and epistemology

The aim of this paper is to make possible dialogue between those who claim that technologies are coded with social, political, or ethical values and those who argue that they are value-neutral. To demonstrate the relevance of this bridge-building project, the controversy regarding agrifood biotechnology will be used as a case study. Drawing on work by L. H. Nelson about the nature of human knowledge-building enterprises and E. F. Kittay’s account of the relationally-constituted self, the argument will be made that all technologies embody the values of the communities that created them. Zahra Meghani is an assistant professor in the Department of Philosophy at the University of Rhode Island. Her research interests are philosophy of technology, feminist theory (especially feminist epistemology and feminist philosophy of science), normative ethics, practical ethics (especially health care ethics), disability issues, and political theory.     

Rutin from different parts of Capparis spinosa growing wild in Khuzestan/Iran

A qualitative and quantitative analysis of rutin from leaves, fruits and flowers of Capparis spinosa growing wild in Khuzestan was achieved. After soxhelet extraction of fats in diethyl ether, rutin was extracted by maceration using 50% EtOH. The ethanol extracts of these parts were separated by preparative TLC on silica gel precoated plate with a mixture of butanol: acetic acid (4:1, by volume) as the developing solvent. The spots were visualized under ultraviolet light (254 nm). Rutin was qualified by comparison of its R(f) value with that of standard. UV/Vis spectrum of separated rutin was also compared with those of standards and showed characteristic wavelengths at 260 and 360 nm. Purified rutin was quantified by UV/Vis spectrophotometric determination at 360 nm. The calibration curve was linear in the range of 0.156-2.5 microg mL(-1) with detection limit of 0.0731 microg mL(-1). The purity of extracted rutin from leave, flower and fruit determined by high performance liquid chromatography were 90.41, 87.25 and 64.56%, respectively. The amounts of rutin in leaves, fruits and flowers were 61.09, 6.03 and 43.72 mg per 100 g of dried powder, respectively. By analyzing the spiked samples of leave, flower and fruit the recovery of the UV/Vis method was in the range of 102-107.6%.     

The effect of different biochars on the growth and water use efficiency of fenugreek (Trigonella foenum-graecum L.)

In two identical pot trials, we investigated the effect of different biochars on the growth and water use efficiency (WUE) of fenugreek (Trigonella foenum-graecum L.) grown with and without water stress. Plants were grown in pots with and without biochar. Rice husk (RH), standard rice husk (SRH), standard wheat straw (SWS) or standard oilseed rape straw (SOS) biochars were added at a rate of 2% by weight. Irrigation was reduced from 80% of field capacity to 40% in half of the pots to create water stress when 50% of the plants flowered. No significant interaction was observed between irrigation and biochar treatments. Water stress resulted in smaller plants (11.5%), fewer pods (16.1%) and reduced 100-seed weight (12.6%), seed yield (20.1%) and plant dry weight (55.0%). All standard biochars increased plant dry weight in a range of 18%−25% compared with the controls. There was no significant effect of biochar on the number of pods and seed weight. Only RH, SWS and SOS biochar increased the number of seeds pod⁻¹ by 9.0%−14.5% compared with the controls regardless of water stress. RH and SOS biochars increased seed yield by 16.7 and 21.6%, respectively. RH, SWS and SOS biochar increased the WUE by 17.3%, 10.1% and 16.2% regardless of water stress, respectively. Based on the experiment, we recommend farmers to add biochar whatever type they have available. However, RH and SOS seem to be better than the others are, as they seem to be able to increase seed yield and WUE considerably.     

Kinetics of nutrient release from different organic residues using a laboratory system

Organic residues play a vital role in maintaining soil fertility in arid and semi-arid regions. Knowledge of the nutrient release from organic residues will help in optimizing nutrient efficiency in agricultural crop production systems. This study was conducted to assess the continuous release of phosphorus (P), potassium (K), calcium (Ca) and magnesium (Mg) from eight different organic residues (sheep manure, beet, waste material, rape, poultry manure, sunflower, potato and garlic) using successive extractions with distilled water. The residues were shaken for 1 h and equilibrated for longer intervals (1, 3.5, 18, 42, 72, 192, 768, 1248, 1608, 1968 and 2328 h) with successive extractions. Cumulative nutrient release curves by different organic residues versus time showed an initial rapid phase followed by a slow phase. The average percentage of nutrients released and the average release rate of nutrients found using a power model was different and were in the order K > P > Ca > Mg and Ca > Mg > P > K, respectively. According to MINTEQ software, the partitioning of total P between HPO₄ ^2? and H₂PO₄ ^? is sensitive to the type of organic residue. On average (pooled over all extractions), between 13% (rape) to 40% (poultry) and 27% (poultry manure) to 79% (beet) of total P in aqueous solutions present as HPO₄ ^2? and H₂PO₄ ^?, respectively. Among the various organic residues and in the first stage of release, sunflower residue, beet residue, poultry manure and garlic residue had the highest rate constant for Ca, Mg, P and K, respectively, indicating the high potential availability of these nutrients in the early stage of application to soils.     

Effect of Drought Stress and Different Levels of Nitrogen and Potassium Fertilizers on the Accumulation of Osmolytes and Chlorophyll in Rice (Oryza sativa L.)

Gesunde Pflanzen - Management of plant nutrition using fertilizers is an approach to deal with drought and to increase water productivity in paddies. The aim of this study, therefore, was to...