Natural diversity of inflorescence architecture traces cryptic domestication genes in barley (<Emphasis Type="Italic">Hordeum vulgare</Emphasis> L.)

Many-grained mutants occurring spontaneously among their less well-endowed field mates may have appeared to early farmers as fortunate twists of fate foreboding wealth and abundance. In domesticated barley, the number of kernel rows in spike can be tripled by recessive mutant alleles at the Six-rowed spike 1 (vrs1) locus that abolish the suppression of lateral spikelet fertility. In another barley row-type, so called intermedium-spike (int), lateral floret size is often intermediate between six-and two-rowed types. Phenotypic and sequence analyses of our intermedium-spike collection revealed that other genes can increase the size of florets and even stimulate occasional grain setting in lateral spikelets. Here, we show that a complete six-rowed phenotype occurs in a diverse panel of intermedium-spike barley carrying wildtype Vrs1 in the presence of the Int-c.a allele of the intermedium spike-c (int-c) gene, previously considered only as a modifier of lateral spikelet fertility. Int-c.a-type alleles had arisen before domestication and are associated with the enlargement of lateral florets in wild barley, suggesting that natural selection/evolution acts towards reduced lateral floret size. Since Int-c.a cannot overcome the suppression of lateral florets in the genomic background of wild barleys, we infer the existence of other gene loci, at which novel alleles or allelic combinations were selected for after domestication, to increase grain number of barley independently of Vrs1.     

Pathogenicity characterization of a bovine triple reassortant rotavirus in calves and piglets

Rotaviruses are important human and animal pathogens with high impact on public health and livestock industry. There is little evidence about the cross-species pathogenicity and extra-intestinal infections of animal and human reassortant rotaviruses, particularly based on all 11 genotyping data. In this study, the bovine triple reassortant KJ56-1 strain harboring two bovine-like genome segments, eight porcine-like genome segments, and one human-like genome segment was used to evaluate the cross-species pathogenicity in its parent species, calves and piglets, and to determine its abilities of causing viremia and extra-intestinal tropisms in piglets. The KJ56-1 strain isolated from a calf diarrhea fecal sample replicated without causing diarrhea and severe intestinal pathology in calves. However, piglets inoculated with this strain showed persistent severe diarrhea and marked intestinal pathology. By SYBR Green real-time RT-PCR, viral RNA was detected in the sera, mesenteric lymph node, lung, liver, choroid plexus, and cerebrospinal fluid in the experimental piglets. An immunofluorescence assay confirmed viral replication in these extra-intestinal organs and tissues. These results indicated that the bovine triple reassortant KJ56-1 strain was virulent to piglets but not to calves. Our data also demonstrated that the reassortant rotaviruses had the ability to spread to the bloodstream from the gut, enter and amplify in the mesenteric lymph node, and disseminate to the extra-intestinal organs and tissues.     

Management Zones Classified With Respect to Drought and Waterlogging

Within-field variations in potential grain yield may be due to variations in plant available soil water. Different water holding capacities affect yield differently in different years depending on weather. By estimating plant-water availability in different weathers, scenarios could be created of how yield potential and thereby fertilizer demand may vary within fields. To test this, measured cereal grain yields from a dry, a wet and an intermediate year were compared with different soil moisture related variables in a Swedish arable field consisting of clayey and sandy areas. Soil water budget calculations based on weather data and maximum plant available water (PAW), estimated from soil type and rooting data, were used to assess drought. A reasonable correlation between estimated and measured soil moisture was achieved. In the dry year, drought days explained differences in yield between the clayey and the sandy soil, but yield was better explained directly by maximum PAW, elevation, clay content and soil electrical conductivity (SEC). Yield correlated significantly with SEC and elevation within the sandy soil in the dry year and within the clayey soil in the wet year, probably due to water and nitrogen limitation respectively. Dense SEC, elevation and yield data were therefore used to divide the field into management zones representing different risk levels for drought and waterlogging. These could be used as a decision support tool for site-specific N fertilization, since both drought and waterlogging affect N fertilization demand.     

Quantification of organic carbon and primary nutrients in litter and soil in a foothill forest plantation of eastern Himalaya

The present study was an effort to understand the amount of litter fall and its subsequent decomposition and quantify the release of available nutrients and soil physicochemical characteristics in plantations of four forest tree species(Lagerstroemia parviflora, Tectona grandis, Shorea robusta and Michelia champaca) in the Chilapatta Reserve Forest of the Cooch Behar Wildlife Division in the Terai zone of West Bengal, India. The most litter(5.61 Mg ha~(-1))was produced by T. grandis plantation and the least(4.72 Mg ha~(-1)) by L. parviflora. The material turnover rate to the soil through decomposition from total litter was fastest during the first quarter of the year and subsequently decreased during the next two quarters. The material turnover rate was only 1 year, which indicates that more than90% of the total litter produced decomposed within a year.The available primary nutrient content in litter varied across the four plantations over the year. The plantations generally did not significantly influence the soil physical characteristics but did significantly influence the availability of primary nutrients and organic carbon at two depths(1–15 and16–30 cm) over the year. The availability of soil primary nutrients in the four plantations also increased gradually from the first quarter of the year to the third quarter and then decreased during the last quarter to the same level as in the first quarter of the year at both depths. The availability for soil organic carbon in the plantations followed a similar trend. The amount of litter produced and the material turnover in the soil in the different plantations differed, influencing the nutrient availability and organic carbon at the plantations. The amount of soil organic carbon was highest for T. grandis(2.52 Mg ha~(-1)) and lowest for L. parviflora(2.12 Mg ha~(-1)). Litter is the source of soil organic matter,and more the litter that is produced by the plantations, the higher will be the content and amount of soil organic carbon in the plantation.     

Pine wilt disease: a short review of worldwide research

This article summarizes the results of the research papers presented at the International Symposium on pine wilt disease (IUFRO Working Party Meeting 4.04.03) held in July 2009, at Nanjing, China. The general topics covered were on pine wilt disease (PWD), its causal organism, the pinewood nematode (PWN) Bursaphelenchus xylophilus, plus other PWN-associated microorganisms that play a significant role in PWD such as bacteria (e.g. Pseudomonas fluorescens). Most of the papers that are reviewed are based on work on PWD-PWN in East Asia and Russia. Specific topics covered include: 1) the fundamental conceptions of PWD development, 2) pathogenicity, 3) host-parasite relationships including the histopathology of diseased conifers and the role of toxins from bacteria-nematode ecto-symbionts, 4) PWN life cycle and transmission, 5) B. xylophilus dissemination models, 6) associations (with other nematodes), 7) diagnostics, 8) quarantine and control of the PWN and 9) biocontrol of the PWN.     

Risk factors associated with feline urolithiasis

Urinary tract diseases are among the main reasons for consultation in veterinary clinics and hospitals. It affects animals of any age, breed and gender. Among the diseases that affect this system, urolithiasis is the second largest cause of clinical signs compatible with feline urinary tract disease. The term urolithiasis refers to the presence of uroliths in any region of the urinary tract, but it is more commonly seen in the bladder and urethra. Uroliths are classified based on the type of mineral present in their composition, therefore, quantitative and qualitative analyzes are important for a better therapeutic approach. The animals may suffer from the disease and be asymptomatic, or show nonspecific clinical signs, making the diagnosis difficult. The disease should not be seen as a single problem, but as a consequence of various disorders. As dietary, metabolic, genetic and infectious causes, as well as factors that potentiate the chance of development of uroliths such as breed, age, sex, age range, obesity, sedentary lifestyle, geographic region and climate. Thus, the knowledge of the factors that influence the formation of uroliths, as well as the understanding of the pathophysiology, are key elements for better alternatives of therapy and prevention. The recognition of these factors helps to identify susceptible populations, minimizing exposure and increasing the protection factors, which facilitates the diagnosis and treatment of patients with urolithiasis. The objective of this paper is to present the main risk factors involved in the formation of urinary lithiasis in felines.     

Growth hormone attenuates branchial HSP70 expression in silver sea bream

In this study the effects of growth hormone (GH) on silver sea bream branchial heat-shock protein 70 (HSP70) expression was investigated using in-vivo and in-vitro experiments. For in-vivo experiments, sea bream were administered recombinant bream GH or the GH secretagogue hexarelin. Pituitary levels of GH were unchanged in fish administered exogenous GH but decreased on hexarelin administration, in comparison with saline controls. Levels of HSP70 were measured using immunoanalysis and it was found that both GH and hexarelin administration caused a significant decrease in branchial HSP70 abundance. For in-vitro analysis, branchial filaments were exposed to a range of GH concentrations (1, 10, and 100 ng/ml) and it was found that HSP70 levels were significantly lowered in all cases. This study adds to the growing body of evidence surrounding the importance of hormones in regulating heat-shock protein expression in fish.     

Sapling biomass allometry and carbon content in five afforestation species on marginal farmland in semi-arid Benin

Allometric equations are routinely used in the estimation of biomass stocks for carbon accounting within forest ecosystems. However, generic equations may not reflect the growth trajectories of afforestation species that are introduced to degraded farmland characterized by water and nutrient limitations. Using sequential measurements of the height, basal diameter, and above- and belowground biomass of juvenile trees, we developed allometric equations for five woody species (Moringa oleifera Lam., Leucaena leucocephala Lam., Jatropha curcas L., Anacardium occidentale L. and Parkia biglobosa Jacq.) subjected to a gradient of water and nutrient availability in an afforestation trial on degraded cropland in the semi-arid zone of Benin, West Africa. For three of the species studied, the allometric relationships between basal diameter and biomass components (i.e. leaves, stems and roots) were described best by a simple power-law model (R² > 0.93). The incorporation of species-specific height–diameter relationships and total height as additional predictors in the power-law function also produced reasonable estimates of biomass. Fifteen months after planting, roots accounted for 10–58% of the total biomass while the root-to-shoot ratio ranged between 0.16 and 0.73. The total biomass of the saplings ranged between 1.4 and 10.3 Mg ha^?1, yielding 0.6–4.3 Mg C ha^?1, far exceeding the biomass in the traditional fallow system. The rate of stem carbon sequestration measured ca. 0.62 Mg C ha^?1 year^?1. Overall, the allometric equations developed in this study are generally useful for assessing the standing shoot and root biomass of the five afforestation species during the juvenile growth stage and can help in reporting and verifying carbon stocks in young forests.     

At5g54160 gene encodes <Emphasis Type="Italic">Arabidopsis thaliana</Emphasis> 5-hydroxyconiferaldehyde <Emphasis Type="Italic">O</Emphasis>-methyltransferase

The function of an Arabidopsis thaliana gene, At5g54160 annotated as a caffeic acid O-methyltransferase CAOMT gene was characterized. The recombinant enzyme of this gene (AtOMT1) catalyzed the O-methylation of phenylpropanoid and flavonoid substrates. The specificity constants (k _cat/K _m) for 5-hydroxyconiferaldehyde (5-HCAld) and quercetin were both 0.11 μM⁻¹·min⁻¹. On the other hand, lignins of At5g54160-knockout Arabidopsis mutants lacked syringyl units. In addition, we showed that the gene silencing also resulted in significant accumulation of caffeyl alcohol (CaAlc). These results strongly suggested that At5g54160 gene is involved in syringyl lignin synthesis for the methylation of both 5-hydroxyconiferaldehyde and 3,4-dihydroxyphenyl compound(s). Part of this work was presented at the Annual Meeting of Japan Society for Bioscience, Biotechnology, and Agrochemistry, March 24–27, 2007     

Development of <Emphasis Type="Italic">Peronospora parasitica</Emphasis> epidemics on radish as modelled by the effects of water vapour saturation deficit and temperature

Epidemics of Peronospora parasitica are strongly affected by temperature and air moisture, and the interaction of these factors. Because a significant percentage of radish plants are grown in greenhouses, it may be possible to influence epidemics by altering the greenhouse climate. The objective of this study was to test the hypothesis that epidemics of P. parasitica can be modelled by the effects of air temperature and moisture in the greenhouse. Such a model could then be used to analyse greenhouse climate control strategies with regard to managing downy mildew. Five radish crops were grown under greenhouse conditions with set-points for heating and ventilation intended to obtain favourable conditions for disease development during the first part of the growing cycle. Subsequent to this first phase, unfavourable conditions were set until harvest. Disease incidence was measured once a week until the radishes reached marketable size. In addition, experiments were carried out in growth chambers in which inoculated plants were subjected to air temperatures between 8 and 27°C, and disease incidence and sporulation intensity were measured. Data from these two experiments were then used to estimate model parameters. In this model, the interactions of air temperature (T) and water vapour saturation deficit (SD) were adequately described by a multiplicative relationship. The simulated epidemics by the fitted model were highly correlated with the observed epidemics (r = 0.91, R ² = 0.83, n = 29). Parameter estimates indicated that T of ca. 20°C and SD < 0.03 hPa resulted in the highest rates of disease development and that the rate was zero when SD > 2.0 hPa. Both experimental data and simulations showed that epidemics of P. parasitica can be effectively controlled by managing the greenhouse climate.