Modeling and mapping forest diversity in the boreal forest of interior Alaska

Context

Patterns of forest diversity are less well known in the boreal forest of interior Alaska than in most ecosystems of North America. Proactive forest planning requires spatially accurate information about forest diversity. Modeling is a cost-efficient way of predicting key forest diversity measures as a function of human and environmental factors.

Objectives

Investigate and predict the patterns and processes in tree species and tree size-class diversity within the boreal forest of Alaska for a first mapped quantitative baseline.

Methods

For the boreal forest of Alaska, USA, we employed Random Forest Analysis (machine learning) and the Boruta algorithm in R to predict tree species and tree size-class diversity for the entire region using a combination of forest inventory data and a suite of 30 predictors from public open-access data archives that included climatic, distance, and topographic variables. We developed prediction maps in a GIS for the current levels (Year 2012) of tree size-class and species diversity.

Results

The method employed here yielded good accuracy for the huge Alaskan landscape despite the exclusion of spectral reflectance data. It’s the first quantified GIS prediction baseline. The results indicate that the geographic pattern of tree species diversity differs from the pattern of tree size-class diversity across this forest type.

Conclusions

The results suggest that human factors combined with topographical factors had a large impact on predicting the patterns of diversity in the boreal forest of interior Alaska.

     

Influences of upland and riparian land use patterns on stream biotic integrity

We explored land use, fish assemblage structure, and stream habitat associations in 20 catchments in Opequon Creek watershed, West Virginia. The purpose was to determine the relative importance of urban and agriculture land use on stream biotic integrity, and to evaluate the spatial scale (i.e., whole-catchment vs riparian buffer) at which land use effects were most pronounced. We found that index of biological integrity (IBI) scores were strongly associated with extent of urban land use in individual catchments. Sites that received ratings of poor or very poor based on IBI scores had > 7% of urban land use in their respective catchments. Habitat correlations suggested that urban land use disrupted flow regime, reduced water quality, and altered stream channels. In contrast, we found no meaningful relationship between agricultural land use and IBI at either whole-catchment or riparian scales despite strong correlations between percent agriculture and several important stream habitat measures, including nitrate concentrations, proportion of fine sediments in riffles, and the abundance of fish cover. We also found that variation in gradient (channel slope) influenced responses of fish assemblages to land use. Urban land use was more disruptive to biological integrity in catchments with steeper channel slopes. Based on comparisons of our results in the topographically diverse Opequon Creek watershed with results from watersheds in flatter terrains, we hypothesize that the potential for riparian forests to mitigate effects of deleterious land uses in upland portions of the watershed is inversely related to gradient.This revised version was published online in May 2005 with corrections to the Cover Date.     

Characterization of wild Prunus yedoensis analyzed by inter-simple sequence repeat and chloroplast DNA

This study was initiated to attempt clarify the identities of taxa referred to as Prunus yedoensis that grows under natural environments in Jeju, Korea and of Yoshino cherry hybrids of cultivated origin (also recorded as P. × yedoensis) in Japan, and to understand the difference between these two taxa. P. yedoensis and other species collected from natural habitats from Jeju, Korea and cultivated materials of Yoshino cherries from Tokyo and Washington, DC, were analyzed with inter-simple sequence repeat (ISSR) markers, and sequence analysis of two chloroplast DNA (cpDNA) genes, rpl16 and trnL-trnF spacer. Depending on the source of Yoshino cherry, accessions show variations with ISSR and cpDNA. Accessions belonging to each of P. serrulata var. spontanea, P. serrulata var. pubescens, and P. sargentii were grouped closely to P. yedoensis and Yoshino cherry accessions. However, two Yoshino cherry accessions that include ‘Akebono’ showed the same rpl16 haplotype of A and A at the position of 113 and 206, respectively, which were found in 4 out of 16 P. yedoensis accessions. Twelve accessions of P. yedoensis and 11 other Yoshino cherries showed rpl16 haplotype of T and A at these positions. P. yedoensis native to Korea can be considered different from Yoshino cherry of hybrid origin from Japan based on ISSR markers and rpl16 haplotypes. Therefore, it may be concluded that the Korean taxon currently referred to as P. yedoensis can be considered indigenous and sufficiently distinct to warrant recognition as a distinct entity.     

Livestock and livelihoods of smallholder cattle-owning households in Cambodia: the contribution of on-farm and off-farm activities to income and food security

The majority of smallholder farming households in Cambodia are rurally based and rely on agriculture to support their livelihoods. However, in recent years, growth in the agriculture sector has stagnated with farmers facing several challenges including declining prices for traditional crops and irregular rainfall patterns. This has led to a need for farmers to diversify income sources with livestock promoted as a more viable livelihood activity, particularly the raising of cattle and poultry. However, uncertain profitability of livestock activities is a common perception by smallholders, especially where animals have not been traditionally viewed as a primary income source. To address this, information is required which compares the income and expenses associated with livestock raising to other on-farm activities and off-farm sources. This study reports on a survey of livelihood survey of 17 male and 21 female representatives of 20 households owning cattle in Cambodia, comparing the associated income and expenses of the various livelihood activities in the 12-month period from January to December 2016. Combined total household income from both on-farm and off-farm sources ranged from USD875 to 17730 with an average of USD6779, representing 51% and 49% from on-farm and off-farm activities, respectively. Cattle raising was the most common source of on-farm income (85%), contributing USD1064 and representing 22% of total household income. General household expenses, such as food and transportation (including expenses associated with off-farm employment), represented the majority of total household expenses (79%). Gross profit calculations indicated higher values for pig raising (USD1841.79), cattle (USD950.80) and non-rice crops (USD884) whilst the highest gross margin value was recorded for cattle (89.33%) followed by vegetables (85.27%) and non-rice crops (83.08%). Whilst wet season and dry season rice returned a negative gross profit value of USD197.27 and USD90.60 on average per household, respectively, both were ranked as most important for household consumption, followed by poultry, providing the main source of energy (rice) and protein (chicken meat) and sustaining household food requirements. The study concludes that although smallholder cattle-owning households in Cambodia undertake a diverse range of on-farm activities, as cattle raising provides a superior income source due to higher returns and lower variable costs, it could be promoted as a preferred livelihood activity by agencies conducting rural extension activities. Although consideration of available labour and monetary funds to invest in cattle raising is required, it was observed that income from off-farm sources may prove beneficial in providing the additional monetary funds to support cattle-raising activities and assist in providing generally poor smallholder households with enhanced economic resilience.     

Some preliminary observations on the susceptibility and resistance of different cattle breeds to Theileria parva infection

Theileria parva-na?ve Friesian (Bos taurus), Boran (Bos indicus) and Maasai Zebu steers (B. indicus) were infected with a T. parva sporozoite stabilate dose which had previously been shown to induce an estimated 50% mortality rate in Boran cattle. All the cattle developed patent infections with no significant differences in the length of the prepatent period to development of macroschizonts (P > 0.05) between the three groups. Clinical theileriosis occurred in all eight the Friesians (100%), five out of nine Borans (55.6%) and two out of five Zebus (40%). Three of the Friesians (37.5%), and two of the Borans (22.2%) died of theileriosis. The different cattle types were equally susceptible to the infective dose used as indicated by the length of the prepatent periods, but there was a marked difference in their development of clinical theileriosis. The gradation in resistance to disease confirms the findings of earlier less critical studies and identifies these cattle breeds as suitable for investigations into the mechanisms of resistance to theileriosis.     

Muscle Fibre Composition of the Bovine Tail: A Pilot Study

A bovine tail was cross-sectioned at four vertebrae, to expose its muscles - dorsal extensors, ventral flexors and the lateral flexors that pass between the transverse processes. Muscle cross-sectional areas were measured at these faces and muscle sections were stained to distinguish slow and fast fibre types. From the muscle and fibre area data and fibre type occurrences, preliminary conclusions are drawn about the role of different muscles. The tail as a model for muscle studies is briefly discussed.     

Postprandial serum gastrin concentrations in normal foals

Postprandial gastrin concentrations were assayed in serum samples from a group of six foals at one day, one week, one month and three months of age. Before sampling, each foal was prevented from feeding for 2 h and was then allowed to suck for 15 mins. Blood samples were taken at the start of the meal and at 30 min intervals for the next 3 h. Feeding increased serum gastrin concentrations at one day, one week and one month, with the greatest increases detected at one day. Mean pre-feeding gastrin concentrations were 25.2 +/- 2.3 pg/ml at one day, 22.8 +/- 3.9 pg/ml at one week, 15.2 +/- 2.3 pg/ml at one month and 15.6 +/- 7.5 pg/ml at three months. Highest mean post prandial concentrations were at 60 mins on Day one (47.4 +/- 15.2 pg/ml) and one month (25.2 +/- 4.1 pg/ml) old foals. There was no apparent post prandial increase in serum gastrin concentrations in foals at three months of age. Precise reasons for changes in postprandial serum gastrin concentrations remain unknown. Factors that could be important include maturation of G cell function, alterations in gastrin metabolism and excretion, and changes in gastrointestinal motility with increasing age.