Genetic variation of high-molecular-weight glutenin subunit composition in Asian wheat

To clarify the genetic properties of the HMW glutenin subunit composition of Asian endemic wheats, SDS–PAGE analysis was conducted using 1,139 bread wheat accessions that were originally collected in Asia. The samples were divided into six regional groups, Western Asia, Caucasia, Central Asia, Afghanistan, Southern Asia, and Eastern Asia. The genotype Glu-A1c, Glu-B1b, and Glu-D1a encoding subunits null, 7+8, and 2+12 had an overall frequency of 55.2%. Thus, we conclude that it is the typical genotype of the HMW glutenin subunits that characterize Asian endemic wheat. The frequency of the typical Asian genotype was relatively high in the central belt of Asia (Western Asia, Afghanistan, and Eastern Asia) and low in the marginal regions (Caucasia, Central Asia, and Southern Asia). In Southern Asia, the frequency of Glu-B1i, which encodes subunit 17+18, was the highest at the Glu-B1 locus. In Caucasia and Central Asia, the frequency of Glu-D1d, which encodes subunit 5+10 (which is considered to be the most useful for making bread), was high. The level of genetic variation, as estimated using the frequencies of the various alleles, was relatively low in the central belt of Asia and high in the marginal regions. Among the three Glu-1 loci, the highest number of alleles was detected at the Glu-D1 locus. This result was caused by the presence of rare Asian specific alleles at the Glu-D1 locus, in which a newly found allele, Glu-D1bs, encoding subunit 2.1+12 was included.     

Effect of nitrogen deposition on CH4 uptake in forest soils in Hokkaido,Japan

Abstract

It has been well documented by short-term artificial experiments that the CH⁴ uptake is inhibited by N input, especially NH^{4 p+}-N input. To investigate the effect of the natural N input by throughfall and other factors on the CH⁴ uptake in forest soils, we measured the CH⁴ uptake rates for 6 months during the snow-free period of the year and N input by throughfall throughout the year at 10 sites in Hokkaido, Japan, from 1997 to 2002. Water filled pore space (WFPS) and pH values in the soils varied widely among the sites (38-93% and 3.9-6.2, respectively). The rates of NH^{4 p+}-N and NH^{3 p-}-N inputs ranged from 1.3 to 6.9 kg N ha^p-1 year^p-1 and from 0.8 to 2.9 kg N ha^p-1 year^p-1, respectively. The NH^{4 p+}-N input was generally higher than the NH^{3 p-}-N input. Total N input by throughfall amounted to 2.3-9.4 kg N ha^p-1 year^p-1. The highest CH⁴ uptake rate occurred within the period from July to September (41-215 μg CH⁴ m^p-2 h^p-1) each year at most sites. CH⁴ uptake rate was relatively low (~50 μg CH⁴ M-2 h^p-1) at northern sites, while a high CH⁴ uptake rate was observed throughout the year 100 (? CH⁴ m^p-2 h^p-1) at southern sites. The mean CH⁴ uptake rates were significantly different among the sites. Cumulative CH⁴ uptake ranged from 1.4 to 6.6 kg CH⁴ ha^p-1 [184 d]^p-1 with a mean values of 3.22 ± 1.36 kg CH⁴ ha^p-1 [184 d]^p-1. Cumulative CH⁴ uptake increased with increasing temperature and decreased with an increase in precipitation (Rain), NH^{4 p+}-N input (TF^NH4) WFPS, soil total C (TC), and total N (TN). There was a quadratic relationship between the CH⁴ uptake and NH^{3 p-}-N input (TF^NO3), soil pH, and C / N ratio in soil. A regression equation was obtained as follows to predict the CH⁴ uptake in forest soils: Cumulative CH⁴ uptake = 0.47 / Rain + 0.38 / TF^NH4 + 0.34 / TC - 0.30 / TF^N03 (R ^p2 = 0.74, p = 0.0001). This equation indicates that atmospheric N input into forest soils is one of the main factors that control cumulative CH⁴ uptake with precipitation, total carbon content in soil in Hokkaido, Japan.     

Effect of increased rainfall on water dynamics of larch (<Emphasis Type="Italic">Larix cajanderi</Emphasis>) forest in permafrost regions,Russia: an irrigation experiment

Sap flow measurements, from July to August 2004, were coupled with micrometeorological, soil moisture, and soil temperature measurements to analyze forest water dynamics in irrigated and undisturbed (control) larch (Larix cajanderi) forest plots in eastern Siberia. Plots were irrigated with 120 mm (20 mm day⁻¹) of water from 17 to 22 July. Sap flow measurements of ten trees at each plot were scaled up to daily stand canopy transpiration (E _c ). Canopy transpiration at the irrigation and control plots was similar before irrigation. Forest evapotranspiration (E _a ) was obtained from Ohta et al. (Agric For Meteorol 148:1941–1953, 2008) while E _a in the irrigation plot was estimated based on the E _{c_irrig}/E _{c_cont} ratio. Rainfall during July–August was 63.4 mm but, after including water from thawing soil layers, the actual water input was 109.9 and 218.5 mm in the control and irrigation plots, respectively. Despite this large difference, a corresponding difference in E _c (and E _a ) was not observed [42.6 (61.5) mm and 46.4 (71.8) mm in control and irrigation plots, respectively]. Daily canopy conductance (g _c ) increased as long as moisture was well supplied in the upper soil layers and evaporative demand was high. Soil moisture and rainfall contribution to E _a was 36.9 and 24.6 mm in the control plot and 34.5 and 37.3 mm in the irrigation plot, respectively. Water supply from soil thawing layers in the control plot and high runoff (105.6 mm) rates in the irrigation plot accounted for the similarity in water dynamics. Under increased precipitation, the forest used less soil water stored from previous growing seasons.     

QTLs for phosphorus deficiency tolerance detected in upland NERICA varieties

Phosphorous (P) deficiency is a major yield limiting factor in rice (Oryza sativa L.) production. The interspecific New Rice for Africa (NERICA) varieties combine general stress tolerance from African cultivated rice (Oryza glaberrima Steud) with characteristics associated with high yield from O. sativa. However, little is known about their ability to tolerate P deficiency. Here, we examined the variation for tolerance to P deficiency among the 18 upland NERICAs and their parents in multi‐year field experiments. The good performance under P deficiency of the O. glaberrima parent CG 14 and some NERICAs suggested that these tolerant NERICAs contain loci associated with P deficiency tolerance inherited from CG 14. Additionally, four QTL clusters for P deficiency tolerance were detected on chromosomes 4, 6 and 11 using F₃ lines derived from the cross between the P deficiency tolerant variety NERICA10 and a Japonica‐type sensitive variety ‘Hitomebore’. These QTLs represent the first step in identifying stress tolerance genes from O. glaberrima that could subsequently be used to enhance P deficiency tolerance in O. sativa.     

Genetic characterization of chicken anemia viruses newly isolated from diseased chicks in Japan in 2020

In this study, a total of nine chicken samples obtained from two broiler flocks in Oita and Tottori prefectures in 2020 were examined for Chicken anemia virus (CAV) infection. The samples were collected from clinically suspected flocks and diseased chickens. The CAV genome was detected in all nine samples tested by real-time PCR. Phylogenetic analyses and sequence comparisons of the full-length VP1 gene sequences indicated that all the Japanese CAV strains obtained in this study formed a similar cluster of genotype III and shared high nucleotide (99.62–100%) identity. The current Japanese CAV strains were closely related to Chinese CAV strains but not related to vaccine strains. One positive selection site of VP1 was detected among the Japanese CAV strains.     

Mediator-type biosensor for real-time wireless monitoring of blood glucose concentrations in fish

We developed a wireless mediator-type biosensor system to rapidly monitor blood glucose concentrations in free-swimming fish. Glucose oxidase was used to determine the glucose concentration, but fluctuations in the oxygen concentrations in the samples affected the measurements. In this work, we used a mediator, a synthetic electron acceptor, as a substitute in the oxidation–reduction reaction, thus ensuring that changes in the concentration of oxygen do not affect the measurements of glucose concentration performed by the sensor. We especially focused on the use of ferrocene as a mediator. The resulting enzyme sensor utilized a Pt–Ir wire (diameter 0.178 mm) as the working electrode and Ag/AgCl paste as the reference electrode. Chitosan was used to fix ferrocene and glucose oxidase to the working electrode. The characteristics of the sensor were tested, and it was found to be capable of measuring glucose independent of the oxygen concentration of the sample. Its reproducibility was also tested, and the results showed that the sensor was suitable for performing measurements in vivo. The sensor was then inserted into to eyeball interstitial sclera fluid in order to wirelessly monitor the glucose concentration in free-swimming fish. Measurements were taken for a total of 48 h. During these measurements, artificial stress was applied to the fish. The glucose concentrations of fish rise with their stress levels. The output current from the sensor gradually increased during the application of stress, which hinted that the stress was monitored by this system.     

Feasibility of near-infrared spectroscopy for online multiple trait assessment of sawn lumber

Near-infrared (NIR) spectroscopy coupled with multivariate analysis was applied to estimate multiple traits of sawn lumber. The effects of the lumber conveying speed (LCS) and measurement resolution of spectra (MRS) on the calibrations were examined. NIR spectra ranging from 1300 to 2300 nm were acquired at LCSs of 10, 20, and 30 m/min and at MRSs of 2, 4, and 16 nm. Prediction models of bending strength (F _b), modulus of elasticity in bending tests (E _b), dynamic modulus of elasticity (E _fr), and wood density (DEN) were developed using partial least-squares (PLS) analysis. LCS and MRS did not significantly influence the calibration performance for any wood property. The regression coefficients also showed no clear differences for any of the conditions. This indicates that the important explanatory variables included in the models are not greatly influenced by these measurement conditions. PLS2 analysis results, when presented graphically, allowed easy interpretation of the relationships between wood mechanical properties and chemical components, e.g., bending strength and stiffness were mainly related to polysaccharides cellulose and hemicellulose. NIR spectroscopy has considerable potential for online grading of sawn lumber, despite the harsh measurement conditions.     

Keratoconus in a cynomolgus monkey

In a seven-year-old male cynomolgus monkey, erythema of the upper eyelid and forehead and corneal opacity, edema and conical protrusion in the eye were observed. At necropsy, ophthalmological and serological examinations revealed binocular corneal opacity and conical protrusion and a high IgE level, respectively. Thinning of the epithelium and stroma of the cornea were noted histopathologically. At the center of the corneal epithelium, the number of epithelial cells was reduced, their cytoplasm was poorer and the basal cells were flatter than at the periphery. Bowman's membrane was folded with partial loss or breakage. Collagen fibers were compacted or disarranged, and the keratocytes were increased in the stroma, with focal pyknosis or loss of the endothelium and folding of Descemet's membrane. Electron microscopical examination revealed atrophy of the corneal epithelial basal cells. This is the first report of a case of keratoconus in a cynomolgus monkey.     

Participatory rural planning in Japan: promises and limits of neighborhood associations

Since the 1990s, there is a growing concern over public participation in local environmental improvement efforts, known as Machizukuri. One progressive practice at the time was the introduction of due process, by which the Machizukuri plan was formulated based on public participation. In the arena of rural planning, some scholars expect that such an ordinance concerned with land use control and democratic decision making will become an effective planning institution for those who deal with rural planning. When we deal with participatory rural planning, we need to pay special attention to the role and the influence of neighborhood associations (NAs) such as chonaikai, jicikai, and burakukai because these organizations have played very important roles in the local administration as a vehicle of demands and concerns for residents. In this paper, authors, through a case study, clarified promises and limits of the NA-based participation in which an NA plays a central role in the planning process. While admitting that adaptation for local context and tradition is an essential part of designing an effective public participation program, the authors contend that there are many risks associated with NA-based participation, such as the lack of communication among residents and partial representation by elderly men. In order, for the NA-based participation, to be more successful, we need to adopt the following measures: (1) young people and women are appointed as representatives, (2) representatives are competent enough to handle planning issues and to represent their constituents, (3) if they are not competent, appropriate measures are adopted to build their capacity or substitutes are sought, and (4) we need to monitor the planning process to make sure that the representatives act as intermediaries between a planning body and its constituents.     

General principles in the community ecology of ectomycorrhizal fungi

Introduction

Knowledge of the factors that determine ectomycorrhizal fungal community structure is essential in many areas of practical significance including conservation, habitat restoration, prevention or amelioration of species invasions, and the prediction of responses to climate change. With respect to these goals, however, community ecology, in general, and ectomycorrhizal fungal community ecology, in particular, have been rather disappointing.

Discussion

Indeed, some feel that community ecology is, at best, an esoteric discipline and, at worst, an inane one. But there is hope. As we apply what has been learned about other organisms concerning the relationships between functional traits and success (abundance), it may be possible to elucidate general principles that govern much of the structuring of ectomycorrhizal fungal communities.

Conclusion

A hierarchical model of ectomycorrhizal fungal community structure is presented that involves abiotic filtering of immigrant propagules based on functional traits, followed by interspecific competition as ameliorated by disturbance and habitat partitioning, the outcomes of which are dependent on functional traits.