Structure and receptor specificity of the hemagglutinin from an H5N1 influenza virus

The hemagglutinin (HA) structure at 2.9 angstrom resolution, from a highly pathogenic Vietnamese H5N1 influenza virus, is more related to the 1918 and other human H1 HAs than to a 1997 duck H5 HA. Glycan microarray analysis of this Viet04 HA reveals an avian alpha2-3 sialic acid receptor binding preference. Introduction of mutations that can convert H1 serotype HAs to human alpha2-6 receptor specificity only enhanced or reduced affinity for avian-type receptors. However, mutations that can convert avian H2 and H3 HAs to human receptor specificity, when inserted onto the Viet04 H5 HA framework, permitted binding to a natural human alpha2-6 glycan, which suggests a path for this H5N1 virus to gain a foothold in the human population.     

Factors influencing the biochemical markers for predicting Mammalian oocyte quality

The need for accurate selection of the best oocytes for in vitro fertilization protocols and thus, production of embryos has driven the search for oocyte quality markers from morphological criteria to biochemical parameters. Current studies are focused on the biochemical constituents of the follicular fluid and gene expression profiling of the cumulus cells. These parameters are, however, affected by factors that must be considered before making a judgment of the oocyte's quality. These includes factors such as the type of hormonal stimulation protocol, age of oocyte donor and heat stress on the donor, all of which have been reported to influence the concentrations of many hormones, apolipoproteins, metabolites, fatty acids and growth factors in the follicular fluid and the expression of several genes in the cumulus cells. Another important point to note is species variation in the response to these extraneous influences, which thus calls for species targeted investigations. As reports are still scanty and investigations assumed to be very keen, we employed this review paper to bring attention of researchers and clinicians to those factors that may come to bear on the outcome of their investigations on oocyte and embryo quality.     

Implications of growth uncertainties associated with climate change for stand management

Climate change is expected to have substantial effects on many aspects of forest ecosystems, including timber production. Temperatures in northern Europe are expected to increase considerably, although there is substantial uncertainty about both the seasonal and average changes that will occur. In Scandinavia, production is predicted to increase across most of the area covered by boreal forest, since the growth of trees in the region is currently limited by temperature. Therefore, we have analyzed the importance of adapting management practices to future climate changes and considered possible ways to address associated stand management problems. For this purpose, we simulated climate scenarios with temperature increases ranging from 2.5 to 6.0°C over a 100-year period, and effects on typical Swedish stands with several species, then optimized their management with simulated annealing. The results indicate that the maximum considered temperature trend would raise the economic value of the stands by almost 5% more than the minimum trend. However, the importance of optimizing management plans in accordance with the correct temperature scenario appears to be limited. The plan optimized for the minimum temperature trend was only marginally inferior to the plan optimized for the maximum temperature trend in the maximum trend scenario, and vice versa. It also seemed adequate to use a deterministic formulation of the problem, and in cases where a stochastic climate change model generated more robust plans, the advantage could be attributed to model artifacts rather than climate change per se.     

Bacterial and fungal response to nitrogen fertilization in three coniferous forest soils

Forest soil carbon (C) pools may act as sinks for, or sources of, atmospheric carbon dioxide, while nitrogen (N) fertilization may affect the net exchange of C in forest ecosystems. Since all major C and N processes in soil are driven by soil microorganisms, we evaluated the effects of N fertilization on biomass and bacterial and fungal activity in soils from three Norway spruce forests with different climatic and N availability conditions. N deposition and net N mineralization were higher at the sites in southern Sweden than at the site in northern Sweden. We also studied the extent to which N fertilization altered the nutrient(s) limiting bacterial growth in soil. We found that on average microbial biomass was reduced by ～40% and microbial activity by ～30% in fertilized plots. Bacterial growth rates were more negatively affected by fertilization than fungal growth rates, while fungal biomass (estimated using the phospholipid fatty acid (PLFA) 18:2ω6,9) decreased more than bacterial biomass as a consequence of fertilization. The microbial community structure (indicated by the PLFA pattern) was changed by fertilization, but not in the same way at the three sites. Soil bacteria were limited by a lack of carbon in all forests, with the carbon limitation becoming more evident in fertilized plots, especially in the forests that had previously been the most N-limited ones. This study thus showed that the effects of N fertilization differed depending on the conditions at the site prior to fertilization.     

Custom total knee replacement in a dog with femoral condylar bone loss

Objective— To report surgical planning, technique, and outcome of custom total knee replacement (TKR) performed to manage a medial femoral condylar nonunion in a dog.
Study Design— Clinical case report.
Animal— A 3-year-old, 20 kg Karelian Bear Hound.
Methods— Computed tomographic scan of the left pelvic limb was used to build a stereolithography model of the distal portion of the femur. The model was used to create a custom augment to replace the missing medial femoral condyle and a custom stem for intramedullary condylar cemented fixation. The augment and stem were adapted to femoral and tibial components already available. The model was used to rehearse the surgery and then the custom prosthesis was implanted.
Results— Weight bearing returned 8 hours after surgery and improved thereafter. Joint alignment was normal and prosthetic joint motion was 60–165° postoperatively. The dog resumed moose hunting 3 months after surgery. Peak vertical force and impulse of the operated limb measured 17 months after surgery were 65% and 47% of the normal, contralateral limb.
Conclusion— Based on short-term follow-up, cemented canine TKR was successfully achieved for management of a severely abnormal stifle joint.
Clinical Relevance— With further refinement and development of commercially available prostheses, TKR should be possible for canine patients.     

Day-to-day variation in milk yield,fat content and protein contentVariations journalières de la production laitère et des teneurs en matières grasses et protéinesTägliche Schwankungen von Milchertrag sowie Fett- und Eiweissgehalt

The day-to-day variation in fat and protein content of milk from individual cows was studied in two series of data. In the second series, variation in milk yield was also investigated. The data were records of single milkings over a period of two weeks.For daily records obtained by combining a.m. and p.m. milkings, the standard deviations found in the first series were 0.39 and 0.10 percentage units for fat and protein content, respectively. In the second series, standard deviations of 1.57 kg for milk, 0.36 units for fat and 0.08 units for protein were computed. Standard deviations between records of consecutive days (second series only) were 1.24 kg for milk, 0.35 units for fat and 0.06 units for protein.Within-cow coefficients of correlation between consecutive a.m. and p.m. milkings were positive but small except for protein. Within-cow coefficients of correlation between pairs of traits at the same milking were consistently small, but highly significant.The interpretation of the results is discussed.     

Questioning the contemporary forest planning paradigm: making use of local knowledge

The forest planning system of large Swedish forest owners follows a three step procedure: long-term, medium-term, and short-term planning. The system is sequential and hierarchical in the sense that longer-term plans form the framework for shorter-term plans, and that top-level management prepares the long range plans and the lower management levels develop plans with successively shorter horizons. Studies indicate that this approach does not fully use existing knowledge within the organization. Problems associated with the top-down approach are also recognized in the general literature on organization and management. A proposal for a bottom-up approach is developed that aim at the use of local level knowledge to enhance accuracy and applicability of the forest plans. After top-level management has issued some fundamental planning directives, medium-term planning is conducted by the districts. Then the district plans are consolidated at the top-level for coordination and revision. A simulated planning process provides an illustration of the approach. The Heureka system is used here to optimize harvests and road costs with a mixed integer programming model of the problem, spanning 10 years with three seasons per year. The importance of detailed local knowledge to the outcome of planning is indicated, and needs for continued decision support systems development is discussed.     

Finite element study of growth stress formation in wood and related distortion of sawn timber

Lack of straightness in timber is the most frequent complaint regarding solid (and laminated) timber products worldwide. Nowadays, customers demand higher quality in the shape stability of wood products than they did earlier. The final distortion of timber boards is mostly caused by moisture-related stresses in wood (drying distortions) and growth-related stresses (distortions appearing when logs are split up to timber boards by sawing). To get more knowledge on how these distortions can be reduced in wooden products, there is a need for improved understanding of this material behaviour through good numerical tools developed from empirical data. A three-dimensional finite element board distortion model developed by Ormarsson (Doctoral thesis, Publ. 99:7, 1999) has been extended to include the influence of growth stresses by incorporating a one-dimensional finite element growth stress model developed here. The growth stress model is formulated as an axisymmetric general plane strain model where material for all new annual rings is progressively added to the tree during the analysis. The simulation results presented include how stresses are progressively generated during the tree growth, distortions related to the redistribution of growth stresses during log sawing, and distortions and stresses in drying reflecting the effects of growth stresses. The results show that growth stresses clearly vary during tree growth and also form a large stress gradient from pith to bark. This in itself can result in significant bow and crook deformations when logs are sawn into timber boards. The distortion results from the simulations match well with the results observed in reality. The parametric study also showed that the radial growth stress distribution is highly influenced by parameters such as modulus of elasticity, micro fibril angle and maturation strain.     

Unequal deployment of clones to seed orchards by considering genetic gain, relatedness and gene diversity

Related clones in seed orchards lead to inbreeding depressionand reduced genetic value of the seeds. This study aims to developthe methodology for deployment of related clones to seed orchardswhen the breeding value and the pedigree are available for eachcandidate. The following goals were considered: high geneticgain, high genetic gain adjusted for predicted inbreeding depression(net gain), high gene diversity, and high effective clone number.The selection strategies included truncation selection withor without relatedness restrictions, maximizing genetic gain(linear deployment) with or without restrictions on relatednessand maximizing net gain. The selection strategies were appliedto Norway spruce seed orchard candidates evaluated in clonaltests. The material comprised full-sib and half-sib relationships.Comparisons were made both at the same gene diversity and atthe effective clone number. Maximizing net gain by unequal rametnumber deployment resulted in considerable higher net gain anda considerable reduction of related ramets in many comparisons.Linear deployment restricted against related clones comparedat the same status number resulted in almost as high net gain.Reduction in gene diversity may be a more important reason toavoid relatives in seed orchards than the subsequent inbreedingfor achieving a high net gain.     

Formation of harvest units with genetic algorithms

Operational planning is normally based on stands as the primary unit of treatment. In recent years, interest has been directed towards the use of smaller area units such that the formation of treatment units becomes part of the operational planning. Here, the method of genetic algorithms was used in order to delineate harvesting units in a forest described as a grid of 20 m × 20 m pixels. Remote sensing data and inventory plots were employed to derive pixel estimates of forest variables. Appropriate parameter settings for the algorithm were investigated for two cases that consisted of 26 × 25 pixels. Based on the experience from these tests, the algorithm was employed in forming treatment units in an area encompassing 100 × 100 grid cells, or 400 ha. Due to the size of the problem, a two-stage procedure was suggested. The solutions of the genetic algorithm were compared with a heuristic, a cell removal algorithm, that was proposed in earlier studies of treatment unit formation. The genetic algorithm performed better than the heuristic for all the cases that were tested.