An application of multilevel model for the analysis of factors influencing paddy field productivity in the Northern Vietnamese Mountains

Paddy and Water Environment - In the Northern Vietnamese Mountains, paddy fields are the main source of foods and an important indicator to define wealth in ethnic communities. This paper deals...     

Climatic determinants of lowland rice development

Accurate modelling of plant development is the basis for any assessment of climate change impact on crop yields. Most rice models simulate development (phenology) based on temperature and photoperiod, but often the reliability of these models is reduced beyond the environment they were calibrated for. In our study, we tested the effects of relative air humidity and solar radiation on leaf appearance rate in greenhouse experiments and analysed data sets from field studies conducted in two extremely different rice-growing environments in Nepal and Senegal. We also analysed environmental effects on duration to flowering of one popular IRRI material (IR64) for eight different sites covering the entire temperature range where rice is widely cultivated. Both low relative air humidity and low solar radiation significantly decreased leaf appearance rate. Mean air temperature explained 81% of the variation in duration to flowering across sites, which was furthermore significantly influenced by relative air humidity. Across all sites, a simple linear regression approach including mean air temperature and mean relative humidity in the calculation of duration to flowering led to a root mean square error (RMSE) of 10 days, which was slightly lower than the RMSE of 11 days achieved with an automated calibration tool for parameter optimization of cardinal temperatures and photoperiod sensitivity. Parameter optimization for individual sites led to a much smaller prediction error, but also to large differences in cardinal temperatures between sites, mainly lower optimum temperatures for the cooler sites. To increase the predictive power of phenological models outside their calibration range and especially in climate change scenarios, a more mechanistic modelling approach is needed. A starting point could be including relative air humidity and radiation in the simulation procedure of crop development, and presumably, a closer link between growth and development procedures could help to increase the robustness of phenological models.     

Testing the yield of a pilot‐scale bubble column photobioreactor for cultivation of the microalga Rhodomonas salina as feed for intensive calanoid copepod cultures

A dual column photobioreactor (PBR) (2 × 47 L) with mixed CO₂/air bubbling was tested for cultivation of the microalga Rhodomonas salina as food for live feed copepods. In the continuous growth phase, the cell density was relatively stable at 2.40 ± 0.13 × 10⁶ cells/ml at an average dilution rate of 0.46 ± 0.02 per day throughout the 30‐day experiment. The produced algae had a high content of both total fatty acids (TFA) and free amino acids (FAA). Especially, the harvested algae contained a high proportion of poly‐unsaturated fatty acids that made up 80% of the TFA and of essential amino acids (35% of all FAA), implicating desirable components as feed for copepods. The current PBR was sufficient to feed a culture of the calanoid copepod Acartia tonsa at a density of 2,500 adult/L in ca. 500 L culture with a daily yield of approximately 17 × 10⁶ eggs. To be able to sustain the integrated copepods production, the suggested volume of the algae cultures should be ca. 20% of the copepod culture volume.     

Comparative performance of hatchery-reared and wild Scylla paramamosain (Estampador, 1949) in pond culture

The performance of hatchery‐reared juveniles either in aquaculture grow‐out systems or stock enhancement is likely to be dependent on a range of factors during the hatchery phase of production. With recent progress in the development of hatchery systems for the mud crabs Scylla spp., there is growing interest in evaluation of the quality of hatchery‐reared juveniles relative to wild seed crabs as currently used in aquaculture. Hatchery‐reared and wild‐collected Scylla paramamosain juveniles were stocked either together in ponds or separately. All crabs were tagged with microwire‐coded tags, so that origin could be determined in the mixed groups. Preliminary validation demonstrated that tagging did not affect survival or growth, with a tag retention of 94%. After 106 days of culture, there was no significant difference in survival at harvest between the two sources of crabs. The wild juvenile crabs had a significantly higher initial weight:carapace width (CW) ratio compared with those from the hatchery, indicating a difference in condition. However, where crabs were stocked separately, the hatchery‐reared animals exhibited significantly faster growth than those collected from the wild, both in terms of specific growth rate and CW increase per month. However, in the mixed ponds, where there was competition with wild crabs, there was no significant difference in growth rate between crabs from the two sources. Overall, the results demonstrate that the growth performance of hatchery‐reared S. paramamosain can at least equal that of wild‐collected seed crabs in ponds culture.     

The effect of a mixture of two plant growth-promoting bacteria from Argentina on the yield of potato,and occurrence of primary potato diseases and pest – short communication

In 2017, we conducted a field experiment to test the influence of a mixture of two plant growth-promoting bacteria (Pseudomonas fluorescens and Azospirillum brasilense) on the yield of three potato varieties. In addition, the influence of the mixture on potato susceptibility to infection by the pseudofungus Phytophthora infestans and fungus Alternaria solani and to attacks by the Colorado potato beetle (Leptinotarsa decemlineata) was investigated. It was the first experiment of its kind in Europe. In the unusually hot and dry year, a positive influence on the yield (17%–31%) was found in all three varieties when the tubers were soaked in the bacterial mixture prior to sowing. We observed no significant differences in potato resilience/susceptibility to harmful organisms among the different treatments (soaked tubers, sprayed tubers, untreated tubers); however, there were significant differences in the productivity between the tuber varieties. The results of our research indicate the bacterial mixture used in this study has a high potential to support satisfactory potato yields under dry conditions and under low levels of infection by foliar fungal diseases and attacks by foliar insects.     

Effect of genotype,explant size,position, and culture medium on shoot generation of Gerbera jamesonii by receptacle transverse thin cell layer culture

An unique procedure for the mass shoot propagation of Gerbera using receptacle transverse thin cell layer (tTCL) culture procedure was developed. Genotype, flower bud age, explant size, position of receptacle tTCLs and culture media were found to affect the success of culture. Ten interspecific crosses of Gerbera showed different shoot regeneration rates and callus induction via receptacle tTCL culture, all of which had shoot regeneration rates higher than 57%. Flower buds collected on the 10th day resulted in 91% shoot regeneration after 6 weeks of culture on basal MS medium [Murashige, T., Skoog, F., 1962. A revised medium for rapid growth and bioassay with tobacco tissue cultures. Physiol. Plant. 15, 475–497] supplemented with 0.02 mg l⁻¹ thidiazuron (TDZ), 0.8 mg l⁻¹ adenine and 10% (v/v) coconut water (CW). This was significantly higher than those from flower buds on the 7th and 14th days (22% and 54%), respectively. Shoot regeneration rate was the highest (94–100%) in the middle layers of the receptacle. For mass shoot propagation, shoot clusters were subcultured on half-strength MS medium supplemented with 0.5 mg l⁻¹ indole-3-butyric acid (IBA), 0.5 mg l⁻¹ 6-benzyladenine (BA) and 2.0 mg l⁻¹ kinetin after every 4 weeks. Plantlets formed when single shoots were cultured on half-strength MS medium containing 1 mg l⁻¹ IBA. All plantlets acclimatized well in the greenhouse.     

Simulation of mefenacet concentrations in paddy fields by an improved PCPF-1 model

An improved simulation model (PCPF-1) has been evaluated for the prediction of the fate of mefenacet in an experimental paddy field. This model simulates the fate and transport of pesticide in paddy water and the top 1 cm of paddy soil. Observed concentrations of mefenacet in the paddy water and the surface soil exponentially decreased from their maximum concentrations of 0.70 mg litre(-1) and 11.3 mg kg(-1), respectively. Predicted mefenacet concentrations both in the water and surface soil were in excellent agreement with those measured during the first 2 weeks after herbicide application, but concentrations in paddy water were appreciably overestimated thereafter. The model simulated mefenacet losses through runoff, percolation and degradation to be respectively 41.9%, 6.4% and 57.3% of applied, and the mass balance error was about -6%. The model simulation implied that drainage and seepage control, especially shortly after application when herbicide concentrations are high, is essential for preventing pesticide losses from paddy fields. In focusing on pesticide concentrations in this early period the PCPF-1 model can be a beneficial tool for risk assessment of pesticide losses and in the evaluation of agricultural management for reducing pesticide pollution associated with paddy rice production.     

Oncogenic CARD11 mutations in human diffuse large B cell lymphoma

Diffuse large B cell lymphoma (DLBCL) is the most common form of non-Hodgkin's lymphoma. In the least curable (ABC) subtype of DLBCL, survival of the malignant cells is dependent on constitutive activation of the nuclear factor-kappaB (NF-kappaB) signaling pathway. In normal B cells, antigen receptor-induced NF-kappaB activation requires CARD11, a cytoplasmic scaffolding protein. To determine whether CARD11 contributes to tumorigenesis, we sequenced the CARD11 gene in human DLBCL tumors. We detected missense mutations in 7 of 73 ABC DLBCL biopsies (9.6%), all within exons encoding the coiled-coil domain. Experimental introduction of CARD11 coiled-coil domain mutants into lymphoma cell lines resulted in constitutive NF-kappaB activation and enhanced NF-kappaB activity upon antigen receptor stimulation. These results demonstrate that CARD11 is a bona fide oncogenein DLBCL, providing a genetic rationale for the development of pharmacological inhibitors of the CARD11 pathway for DLBCL therapy.