Biological and genetic diversity of plasmodiophorid-transmitted viruses and their vectors

About 20 species of viruses belonging to five genera, Benyvirus, Furovirus, Pecluvirus, Pomovirus and Bymovirus, are known to be transmitted by plasmodiophorids. These viruses have all positive-sense, single-stranded RNA genomes that consist of two to five RNA components. Three species of plasmodiophorids are recognized as vectors: Polymyxa graminis, P. betae, and Spongospora subterranea. The viruses can survive in soil within the long-lived resting spores of the vector. There are biological and genetic variations in both virus and vector species. Many of the viruses are causal agents of important diseases in major crops such as rice, wheat, barley, rye, sugar beet, potato, and groundnut. Control is dependent on the development of resistant cultivars. During the last half century, several virus diseases have rapidly spread worldwide. For six major virus diseases, we address their geographical distribution, diversity, and genetic resistance.     

水稻（Oryza sativa L．）苹果酸酶（OsNADP-ME3）基因在逆境下的表达特性研究

水稻苹果酸酶（NADP-ME）是多基因家族,由3个胞质型NADP-ME和1个质体型NADP—ME构成。本研究针对水稻胞质型成员（命名为NADP-ME3）（NM001061367）进行初步的功能解析。克隆获得的NADP-ME3基因的cDNA序列全长为2240bp,其中5’非翻译区为151bp,3’非翻译区为376bp,开放读码框（ORF）长1713bp,编码570个氨基酸。为研究NADP-ME3在逆境胁迫下的表达量变化,No．hemblot检测结果显示,在NaCl、NaHCO,和PEG胁迫条件下,NADP-ME3随胁迫处理时间的不同表达量呈现不同程度的变化,推断NADP-ME3可能与非生物胁迫有应答关系,将NADP-ME3转入拟南芥中并通过观察转基因拟南芥在非生物胁迫下表型变化,发现NADP-ME3能够在一定程度上提高植物对非生物胁迫的耐受性。     

Phylogenetic groups and cephalosporin resistance genes of Escherichia coli from diseased food-producing animals in Japan

A total of 318 Escherichia coli isolates obtained from different food-producing animals affected with colibacillosis between 2001 and 2006 were subjected to phylogenetic analysis: 72 bovine isolates, 89 poultry isolates and 157 porcine isolates. Overall, the phylogenetic group A was predominant in isolates from cattle (36/72, 50%) and pigs (101/157, 64.3%) whereas groups A (44/89, 49.4%) and D (40/89, 44.9%) were predominant in isolates from poultry. In addition, group B2 was not found among diseased food-producing animals except for a poultry isolate. Thus, the phylogenetic group distribution of E. coli from diseased animals was different by animal species. Among the 318 isolates, cefazolin resistance (minimum inhibitory concentrations: ≥32 μg/ml) was found in six bovine isolates, 29 poultry isolates and three porcine isolates. Of them, 11 isolates (nine from poultry and two from cattle) produced extended spectrum β-lactamase (ESBL). The two bovine isolates produced bla_CTX-M-2, while the nine poultry isolates produced bla_CTX-M-25 (4), bla_SHV-2 (3), bla_CTX-M-15 (1) and bla_CTX-M-2 (1). Thus, our results showed that several types of ESBL were identified and three types of β-lactamase (SHV-2, CTX-M-25 and CTX-M-15) were observed for the first time in E. coli from diseased animals in Japan.     

Multi-locus sequence typing of Salmonella enterica subsp. enterica serovar Enteritidis strains in Japan between 1973 and 2004

Salmonella enterica subsp. enterica serovar Enteritidis (S. Enteritidis) was responsible for a worldwide pandemic during the 1980s and 1990s; however, changes in the dominant lineage before and after this event remain unknown. This study determined S. Enteritidis lineages before and after this pandemic event in Japan using multilocus sequence typing (MLST). Thirty S. Enteritidis strains were collected in Japan between 1973 and 2004, consisting of 27 human strains from individual episodes, a bovine strain, a liquid egg strain and an eggshell strain. Strains showed nine phage types and 17 pulsed-field profiles with pulsed-field gel electrophoresis. All strains had homologous type 11 sequences without any nucleotide differences in seven housekeeping genes. These MLST results suggest that S. Enteritidis with the diversities revealed by phage typing and pulsed-field profiling has a highly clonal population. Although type 11 S. Enteritidis may exhibit both pleiotropic surface structure and pulsed-field type variation, it is likely to be a stable lineage derived from an ancestor before the 1980s and/or 1990s pandemic in Japan.     

Transfer of radiocesium from hydroponic medium to potherb mustard and tomato plants

Abstract

Potherb mustard (Brassica rapa var. nipposinica) and tomato plants (scion, ‘CF Momotaro haruka’; rootstock, ‘Dokutar K’; Solanum lycopersicum) were cultured in hydroponic medium containing cesium-137 (¹³⁷Cs) at three different concentrations (0.03, 0.13 and 1.03 Bq L^?1), and uptake of ¹³⁷C into the plants was determined. When the ¹³⁷Cs radioactivity concentration in the medium was 1.03 Bq L^?1, the ¹³⁷Cs radioactivity concentrations in the edible portions of the plants were 4.80 Bq kg^?1 fresh weight for the potherb mustard plants and 3.60 Bq kg^?1 fresh weight for the tomato plants. In both species, the ¹³⁷Cs radioactivity concentration in the edible portions decreased with decreasing ¹³⁷Cs radioactivity concentration in the culture medium. When the ¹³⁷Cs radioactivity concentration in the medium was 0.03 Bq L^?1, a concentration observed in many streams and in tap water in Fukushima Prefecture after the accident at the Fukushima Daiichi Nuclear Power Plant, the ¹³⁷Cs radioactivity concentrations in the edible portions of the plants were 0.50 and 0.15 Bq kg^?1 fresh weight for potherb mustard and tomato plants, respectively. These values are less than the Japanese allowable limit for radiocesium in food. For both species, the transfer factors for ¹³⁷Cs uptake from the culture media to the edible portions and the average transfer rates over the cultivation period were calculated.     

Abstracts of nippon Dozyohiryogaku Zasshi

Aluminum toxicity and boron deficiency are the major factors that limit plant growth and development in acid soils and in B-deficient soils. Root growth inhibition is an early symptom of AI toxicity and B deficiency. Effects of AI and B supply and their interaction on the growth of wheat (Triticum aestivum L.) seedlings were investigated using hydroponics. Fifteen wheat cultivars commonly grown in Bangladesh were used and found to differ considerably in their tolerance to AI toxicity and B deficiency. The relative root length of all the wheat cultivars at 50 µM AI (pH 4.5) ranged from 27 to 71% relative to the control (0 µM AI). Among the cultivars, Inia66 and Kalyansona were found to be the most Al-tolerant and sensitive cultivars, respectively, based on the data of relative root length, malate exudation and AI content of roots. Malate was detected in all the cultivars in the presence of 100 µM AI (pH 4.3). Inia66 exuded a 6-fold larger amount of malate and the AI content of roots was 4 times lower than that in Kalyansona. The vigorous seedling growth was observed at 40 µM B among the series of B treatments. Considerable cultivar differences in response to 40 µM B were observed among the 15 cultivars. Kalyansona was considered to be the most sensitive and Kheri the most tolerant to B deficiency. The interaction effects of B ( 40 and 200 µM) and AI (50 µM) on seedling growth were also examined in Inia66 and Kalyansona. Root growth was inhibited in the presence of Al but B supply especially at 200 µM B in the Kalyansona cultivar caused a slight improvement.     

Varietal differences in the growth of rice plants in response to aluminum and silicon

Effects of Al (0–100 μM) and Si (0–2,000 μM) supplied singly or in combination on root growth of different rice varieties were examined under hydroponic conditions. Al addition inhibited root elongation of rice plants, and the inhibition increased with increasing amount of Al in the culture solution. Among 22 indica varieties and among 8 japonica varieties tested, IAC3 and Nakateshinsenbon were relatively tolerant to AI, respectively, whereas IR45 and Norinl were relatively sensitive to AI, respectively. Si exerted a beneficial effect at all levels of Si treatment on indica varieties, whereas Si supply resulted in a slight increase in the root dry weight of japonica varieties only at the highest level (2,000 μM Silo The alleviation of Al inhibition of rice root growth by Si was observed in the combination of Al and Si treatments. Alleviation was more pronounced for all the Si treatments in indica varieties than in japonica varieties, and the alleviation was maximum with 2,000 μM Si in IR45. The alleviation effect by Si was more pronounced in the AI-sensitive varieties than in the AI-tolerant varieties. The application of Si resulted in an increase in the contents of Al and Si in plants, and there was no relationship between the Al content and Al inhibition in plants.     

Physiological characteristics of blue sac disease in chum salmon alevins

Fisheries Science - Blue sac disease (BSD) in salmonids results in the abnormal accumulation of ascites fluid and can often lead to mass mortality. However, the symptoms and causes of BSD remain...     

Occurrence of Fusarium oxysporum f. sp. melonis Race 1 in Japan

In 1994, Fusarium wilt of melon cultivars which are resistant to races 0 and 2 of Fusarium oxysporum f. sp. melonis was observed in southern area of the Lake Biwa region, Shiga prefecture. In commercial fields, mature plants of cv. Amus which were grafted onto cv. Enken Daigi 2, and of cv. FR Amus showed yellowing, wilting and finally death before harvesting of fruits. Diseased plants had vascular and root discolorations, and their stem sections yielded typical colonies of F. oxysporum. When the Shiga strains were tested for their pathogenicity to 12 species of cucurbits, they caused wilts only on melon. Using race differential cultivars of melon, the Shiga strains were classified as race 1 of F. oxysporum f. sp. melonis, which has not been reported in Japan. To further characterize their pathogenicity, the strains were used to inoculate 46 additional cultivars of melon, oriental melon and oriental pickling melon. All the race 1 strains were pathogenic to the cultivars tested, and their host range was apparently different from those of strains belonging to other races (races 0, 2 and 1,2y). DNA fingerprinting with a repetitive DNA sequence, FOLR3, differentiated race 1 strains from strains of races 0 and 2, but not from race 1,2y strains. Received 2 July 1999/ Accepted in revised form 30 September 1999     

Identification of RFLP markers linked with heading date and its heterosis in hexaploid wheat

Recombinant inbred lines (RILs) from a cross between hexaploid wheat (T. aestivum cv. Chinese Spring (CS) and T. spelta (Sp)) were used for RFLP analysis of heading date and heterosis. Fourteen RFLP markers linking with heading date were identified; two were localized on chromosome 1A, one on 2A, three on 2B, one on 2D, four on 5A, two on 7A and one unlinked but reported to be on group 2. All of these markers may be attributable to genes for earliness per se. However, the markers in the chromosomes of 1A and 7A are new to this study. RILs were crossed with (tim)-CS, the alloplasmic CS with T. timopheevi cytoplasm, and the heterosis from earlier-parent and mid-parents were calculated for the F₁s to examine the heterotic effect toward earliness on heading date. Five and two RFLP markers were associated with heterosis from the earlier-parent and mid-parents, respectively. They were distributed on the chromosomes of homoeologous groups 1 and 2. This revised version was published online in July 2006 with corrections to the Cover Date.