Long‐term changes of marine subtidal benthic communities in North East Asia (Yellow and Japan seas) in a global change context: A review

1. A review of the long‐term changes and variations in benthic communities and the current status of the marine invasive species (MIS) in shallow waters of the Yellow Sea (Chinese sector) and the Sea of Japan (Russian and partly Korean sectors) is presented. This paper reflects on the progress and lessons learned, recommending actions for the future about the conservation of biodiversity.
2. In the Bohai Sea, the benthic ecosystem has been degenerating due to anthropogenic activities such as overfishing and pollution since the 1950s. The dominant position of K‐strategy species is gradually being lost and replaced by R‐strategy species. In the Yellow Sea, the macrobenthic community is different from other areas due to the Yellow Sea Cold Water Mass. Many economic species have been destroyed, and the biotic structure has changed significantly due to overfishing and climate change.
3. In the Russian sector of the Sea of Japan, the macrobenthic communities in the shallow‐water soft bottom have generally been in a stable condition for the last decades, except for some heavily polluted or disturbed areas due to dredging operations. The abundance of select large invertebrate species has changed considerably due to commercial fishing and poaching. Variations in macro? and meiobenthic communities under aquaculture conditions have occurred on a local scale during the last five decades.
4. MIS show obvious differences between China and Russia in the following aspects: introduction pathways of MIS, composition and number of non‐native species, threats and impacts of MIS to native communities and ecosystems, and economic and public health impacts.
5. Long‐term monitoring programmes should be developed to reveal future biotic changes and to separate the effects of cyclic variations of benthic communities from the impacts of pollution and eutrophication. Standardization of sampling procedures is required to compare changes/alternations in benthos across various regions worldwide.

     

Variations in the Social Networks of Forest Owners: The Effect of Management Activity,Resource Professionals,and Ownership Size

Social networks play an important role in the communication of information among forest owners and how owners process that information in making land management decisions. This article examines variations in the social network characteristics of family forest owners using survey data and interviews with 42 owners in south-central Indiana. We examine how network structure and content vary by harvesting activity, information sources, ownership attributes, sociodemographic characteristics, and location. Quantitative measures of network size and diversity, along with a qualitative understanding of network content and function are discussed and compared for active and passive forest managers. We find that active managers (people who had a recent timber harvest) had at least twice as many social ties related to forest management compared to passive managers, particularly after accounting for parcel ownership size, forest area, and total landholding size. Learning and service were the main functions of these networks, with learning being the most frequently cited reason for talking to others regardless of the management profile of forest owners. The study contributes to a growing interest in mixed-methods approaches to network studies and research on social networks in private forestry.     

Reactivation of the paternal X chromosome in early mouse embryos

It is generally accepted that paternally imprinted X inactivation occurs exclusively in extraembryonic lineages of mouse embryos, whereas cells of the embryo proper, derived from the inner cell mass (ICM), undergo only random X inactivation. Here we show that imprinted X inactivation, in fact, occurs in all cells of early embryos and that the paternal X is then selectively reactivated in cells allocated to the ICM. This contrasts with more differentiated cell types where X inactivation is highly stable and generally irreversible. Our observations illustrate that an important component of genome plasticity in early development is the capacity to reverse heritable gene silencing decisions.     

Whole-genome shotgun sequencing of mitochondria from ancient hair shafts

Although the application of sequencing-by-synthesis techniques to DNA extracted from bones has revolutionized the study of ancient DNA, it has been plagued by large fractions of contaminating environmental DNA. The genetic analyses of hair shafts could be a solution: We present 10 previously unexamined Siberian mammoth (Mammuthus primigenius) mitochondrial genomes, sequenced with up to 48-fold coverage. The observed levels of damage-derived sequencing errors were lower than those observed in previously published frozen bone samples, even though one of the specimens was >50,000 14C years old and another had been stored for 200 years at room temperature. The method therefore sets the stage for molecular-genetic analysis of museum collections.     

Genetic improvement of Israeli blue (Jordan) tilapia,Oreochromis aureus (Steindachner), through selective breeding for harvest weight

Genetic parameters and selection responses were obtained for harvest body weight of blue tilapia (Oreochromis aureus) from data collected over three generations in a selected population. A total of 18 194 records representing 186 sires and 201 dams were used in the analysis. Within generation heritability estimates for harvest body weight ranged from 0.18 to 0.58. When data from more than one generation were included in the analysis, heritability estimates became more stable (0.33–0.40) and it was 0.33 when all data were included in the analysis. The common full‐sib effect accounted for 10% of the phenotypic variance in the full data set. Heritability for survival from stocking to harvest was estimated at 0.01 and 0.09 in actual units (fitting an animal model) and in the logit (sire model) scale respectively. The genetic correlation between harvest body weight and survival was 0.22 and not significantly different from zero. The total selection response for harvest body weight over the three generations of selection measured as the difference between least‐squares means of selected and control lines was 17.7%. The corresponding figure when response was measured as the difference between mean breeding values of selected and control lines was 19.6%. The average inbreeding coefficient was 0.003 after three generations of selection. These results indicate that there are good prospects for the genetic improvement of harvest body weight in blue tilapia.     

The Phospholipid Molecular Species Profile of Apostichopus japonicus Tissues Modifies through Exposure to n-3 Polyunsaturated Fatty Acid-Deficient Diet

The sea cucumber Apostichopus japonicus, being a target species of commercial fisheries and aquaculture, is also used as a source of biologically active compounds with high pharmacological potential. By the methods of high-performance liquid chromatography with high resolution mass spectrometry, we analyzed the major structural phospholipids (PL)—glycerophosphoethanolamines (PE), glycerophosphocholines (PC), glycerophosphoserines (PS), and glycerophosphoinositols (PI)—in tissues of wild and cultured sea cucumbers. The intestines of the wild and cultured animals differed from the other tissues by an elevated content of molecular species of PE, PC, and PS with 22:6n-3 fatty acid. The respiratory trees of the studied animals contained a high level of odd-chain PI and PI with 20:4n-6. The exposure to n-3 PUFA-deficient diet resulted in substantial changes in the molecular species profile of PL of the wild and cultured animals. The cultured sea cucumbers showed a significant decrease in the 20:5n-3 content in all four studied PL classes. A replacement of 20:5n-3 by 20:4n-6 occurred in PE, PC, and PI. The decrease in the level of molecular species of PS with 20:5n-3 was compensated by an increase in the level of monounsaturated long-chain PS. The diet of cultured sea cucumbers is a crucial factor for enhancing the nutritional properties of the product obtained from them.