Isolation and structure determination of blepharismin, a conjugation initiating gamone in the ciliate blepharisma

One of the gamones (gamone II) which are effective for the induction of conjugation in Blepharisma intermedium has been isolated in a crystalline form and designated as blepharismin. From the result of chemical and spectroscopic investigations, in which x-ray crystallographic analysis was used as a definitive tool, blepharismin has been found to have the structure of calcium 3-(2'-formylamino-5'-hydroxybenzoyl)lactate.     

Irradiation history of Itokawa regolith material deduced from noble gases in the Hayabusa samples

Noble gas isotopes were measured in three rocky grains from asteroid Itokawa to elucidate a history of irradiation from cosmic rays and solar wind on its surface. Large amounts of solar helium (He), neon (Ne), and argon (Ar) trapped in various depths in the grains were observed, which can be explained by multiple implantations of solar wind particles into the grains, combined with preferential He loss caused by frictional wear of space-weathered rims on the grains. Short residence time of less than 8 million years was implied for the grains by an estimate on cosmic-ray-produced (21)Ne. Our results suggest that Itokawa is continuously losing its surface materials into space at a rate of tens of centimeters per million years. The lifetime of Itokawa should be much shorter than the age of our solar system.     

The variation of ferrous iron content and soil profiles under flooded condition of rice field (Part 1)

Rice fields are kept under flooded condition during the growing period of rice plant for at least three months. Soil of rice fields therefore shows consequently remarkable differences as compared with that of upland fields. This may be understood as a kind of redoxy system. Many soil constituents suffer big changes during floodtime. One of the most important constituents is iron because of its abundance in soil and its color change.     

Evaluation of a sequential extraction procedure for the fractionation of thallium in soils and determination of the content by flame atomic absorption spectrometry

Abstract

The release of carbonyl sulfide (COS) from 7 unamended paddy soils was estimated under aerobic and waterlogged conditions. The addition of organic materials to the soils increased the amount of COS evolved under waterlogged conditions. To assess the sources of the COS released from the soils, the soils were incubated under aerobic and waterlogged conditions after treatment with 17 inorganic or organic S-containing compounds. It was concluded that the following compounds represented sources of the COS released from the paddy soils: cystine, cysteine, thiocyanate, lanthionine and djenkolic acid.     

High Performance Size Exclusion Chromatography of Water Extract from Sewage Sludge-Soil Mixture

In order to investigate the degradation or synthetic process of organic matter in soil, some instrumental analyses on the water extract from soil have been recently performed. SCHAUMBERG et al. (1) who observed the changes in the chemical nature of water-soluble components of sewage sludge-soil mixtures by using infrared spectroscopy, supplied valuable information on the fate of sludge organic components in soil. The authors reported (2, 3) that the stabilization process of sewage sludge in soil can be monitored by the conventional gel chromatography method with Sephadex G-15 in water extracts from sewage sludge-soil mixtures.

The previous works (2, 3) showed that macromolecular compounds which cannot be separated by Sephadex G-15 gel were present in the water extracts from sewage sludge-soil mixtures. High performance size exclusion chromatography (HPSEC) offers the possibility to estimate the molecular size distribution of such macromolecules, because HPSEC allows rapid size separation and high resolution. In the size separation of water-soluble compounds by HPSEC, however, the charge exclusion and the hydrophobic interaction between solutes and the stationary phase of the column caused accelerated or retarded transportation of water-soluble compounds through the column, leading to the erroneous estimation of the molecular size (4).

In this study, the authors applied HPSEC to water extracts from sewage sludgesoil mixtures during their process of decomposition in soil to observe the change of the molecular size distribution of the components.     

Prediction of dry veneer stiffness using near infrared spectra from transverse section of green log

This study examined the feasibility of near infrared spectroscopy as a novel technique for log assessment on the basis of wood property. Near infrared (NIR) spectra were obtained from the transverse section of green log and multivariate regression analysis was carried out to predict the stiffness of veneer processed from the log. The stiffness of the veneer was dynamic modulus of elasticity measured using ultrasonic method. The calibrations of veneer stiffness had moderate relationships between measured and NIR-predicted values, with regression coefficients ranging from 0.84 to 0.88. The calibration equations were applied to the test set and it was found that predictions were also well fitted, with regression coefficients ranging from 0.67 to 0.89. The results indicate that the variation of wood stiffness within the logs could be assessed using the NIR spectra from the cross-section of logs. The spectra were obtained from green condition of the log and the stiffness of veneer was measured after kiln drying. Thus, the results imply that the wood stiffness in dry condition could be predicted using the spectra collected from green logs. If the models obtained in this study put into the imaging system, the two-dimensional map of the stiffness would be visualized on the cross-section of logs. The NIR spectroscopy coupled with imaging system could compensate the weak point of the traditional methods for log assessment.     

Comparison of PCR assays for detection and quantification of Phomopsis sclerotioides in plant and soil

We developed a real-time PCR assay using a TaqMan probe (TM-qPCR) for specific detection and quantification of Phomopsis sclerotioides, causal agent of black root rot of cucurbit crops. The design of the primer sets and hybridization probe was based on the internal transcribed spacer region of the ribosomal DNA. The TM-qPCR assay was compared with a conventional, standard PCR (sPCR) assay and on a quantitative real-time PCR (SG-qPCR) assay based on SYBR Green I. The TM-qPCR assay had a detection limit of ca. 0.4 fg of P. sclerotioides DNA, which was approximately 100 times more sensitive than the sPCR assay and almost equivalent to the SG-qPCR assay. The TM-qPCR and SG-qPCR assays both were able to detect various quantities of P. sclerotioides DNA from diseased plants and infested soils, including DNA levels that were not detectable by the sPCR assay. However, the TM-qPCR was advantageous for samples containing PCR-inhibiting substances because its multiplex real-time PCR function allows the adjustment of cycle threshold values with an internal control. Based on the high specificity and sensitivity required for analyzing DNA in natural samples, the newly developed TM-qPCR assay was the most reliable tool for rapidly detecting and quantifying P. sclerotioides in plant and soil samples.     

Functional degeneration of the resistance gene nsv against Melon necrotic spot virus at low temperature

The single recessive gene, nsv, which confers resistance against Melon necrotic spot virus (MNSV), has recently been used to develop virus-resistant melon cultivars in Japan. However, the Chiba isolate of MNSV, a common isolate in Japan, infected resistant cultivars when inoculated melon plants were grown at 15°C. Viral RNAs accumulated in protoplasts from resistant cultivars at both 15 and 20°C. Mechanical inoculation of the cotyledons caused MNSV to spread throughout the leaves at 15°C, but not at 20°C. These results support our novel hypothesis that a temperature-sensitive inactivation of disease resistance genes occurs at the nsv locus in melon cultivars with the resistance gene grown at temperatures below 20°C. The first and second authors contributed equally to this research.     

The first occurrence of leaf mold of tomato caused by races 4.9 and 4.9.11 of <Emphasis Type="Italic">Passalora fulva</Emphasis> (syn. <Emphasis Type="Italic">Fulvia fulva</Emphasis>) in Japan

Tomato leaf mold caused by Passalora fulva was found on two tomato varieties carrying the Cf-9 gene in Japan, in 2007. The isolates obtained from Chiba and Fukushima were identified as race 4.9.11, and those from Gunma were races 4.9 or 4.9.11. This is the first report in Japan of tomato leaf mold caused by P. fulva strains that can overcome the Cf-9 gene.