An antibiotic fusaricidin: a cyclic depsipeptide from Paenibacillus polymyxa E681 induces systemic resistance against Phytophthora blight of red-pepper

In this study fusaricidin, a cyclic depsipeptide isolated from Paenibacillus polymyxa E681 (E681), was demonstrated to control Phytophthora blight infection caused by Phytophthora capsici in red-pepper. The minimal inhibitory concentration (MIC) of fusaricidin was found to be 16 ppm against P. capsici. The disease severity of P. capsici was 40% at 0.1 ppm of fusaricidin when compared with water-treated control (81.7%) on post-treatment, whereas the disease severities on pre-treatment were 45% and 83.3% in fusaricidin (0.1 ppm) and water-treated control, respectively, in red-pepper plants. Significant (P?<?0.05) disease suppression was observed on treatment with fusaricidin (0.1 ppm) by foliar spray and soil drench. The disease severity was drastically reduced to 3.3% by soil drench of fusaricidin (1.0 ppm), whereas in water-treated control, the disease severity was 83.3% in the first experiment. Fusaricidin at 0.1 ppm reduced disease severity of P. capsici to 27.5% when compared with positive control (43.1%) and water-treated control (66.2%) in the second experiment. Soft rot disease in tobacco was suppressed upon treatment with fusaricidin at 1.0 ppm by leaf infiltration. RT-PCR analyses of Arabidopsis thaliana revealed that there was an up-regulation of pathogenesis-related (PR) gene expression in wild type A. thaliana (Col-0), while there was no accumulation of PR genes, which implies that the mechanism of protection might be based on a salicylic acid-dependent pathway. This is the first report that fusaricidin exhibits protection against plant pathogens in addition to activity as an antibiotic agent. Hence, E681 can play a role in plant protection by secretion of ISR elicitors including fusaricidin.     

Identifying autism loci and genes by tracing recent shared ancestry

To find inherited causes of autism-spectrum disorders, we studied families in which parents share ancestors, enhancing the role of inherited factors. We mapped several loci, some containing large, inherited, homozygous deletions that are likely mutations. The largest deletions implicated genes, including PCDH10 (protocadherin 10) and DIA1 (deleted in autism1, or c3orf58), whose level of expression changes in response to neuronal activity, a marker of genes involved in synaptic changes that underlie learning. A subset of genes, including NHE9 (Na+/H+ exchanger 9), showed additional potential mutations in patients with unrelated parents. Our findings highlight the utility of "homozygosity mapping" in heterogeneous disorders like autism but also suggest that defective regulation of gene expression after neural activity may be a mechanism common to seemingly diverse autism mutations.     

Hepatitis E virus as an emerging zoonotic pathogen

Hepatitis E outbreaks are a serious public health concern in developing countries. The disease causes acute infections, primarily in young adults. The mortality rate is approximately 2%; however, it can exceed 20% in pregnant women in some regions in India. The causative agent, hepatitis E virus (HEV), has been isolated from several animal species, including pigs. HEV genotypes 3 and 4 have been isolated from both humans and animals, and are recognized as zoonotic pathogens. Seroprevalence studies in animals and humans indirectly suggest that HEV infections occur worldwide. The virus is primarily transmitted to humans via undercooked animal meats in developed countries. Moreover, transfusion- and transplantation-mediated HEV infections have recently been reported. This review summarizes the general characteristics of hepatitis E, HEV infection status in animals and humans, the zoonotic transmission modes of HEV, and HEV vaccine development status.     

Estimating water footprint of paddy rice in Korea

The purpose of this article is to examine the issues of low grain self-sufficiency and the high portion of agricultural water use in South Korea, and to trace the water footprint (WF) of rice products. In this study, different types of water use were described as green, blue, and gray WFs and were analysed using suitable estimation methods to determine irrigation water requirements in South Korea. Virtual water (VW) import and export of rice product were calculated based on international trade statistics during 2004–2009, and the WF of the national consumption was estimated. The WF of rice was 844.5 m³/ton, and green, blue, and gray water accounted for 294.5, 501.6, and 48.4 m³/ton, respectively. The VW import and export were 404.17 and 2.03 Mm³/year, respectively, against an import 199.5 times that of the export. Three countries (China, USA, and Thailand) accounted for over 95 % of the total VW imports of rice products into South Korea. The total WF was 5,712.08 Mm³/year, thus the WF per capita for rice was estimated at 118.1 m³/year. The internal WF of rice consumption was 5,308.05 Mm³/year, and the external WF was 404.03 Mm³/year. The WF of total agricultural water use should be analyzed for sustainable agricultural production and water management, and these results should be applied in establishing long-term policies for agricultural water resources.     

Distribution and characterization of class 1 integrons in Salmonella enterica serotype Gallinarum biotype Gallinarum

Fowl typhoid caused by Salmonella enterica subsp. enterica serotype Gallinarum biotype Gallinarum is the most important chicken disease in Korea. Due to appearance of new or multiple antibiotics resistances in the recently isolated strains, it was difficult to control the disease using antibiotics in our country. Therefore, the prevalence and genetic contents of class 1 integrons in biotype Gallinarum isolated between 1992 and 2001 were investigated by PCR and direct sequencing, respectively. Out of 90 strains, 35 (39%) carried class 1 integrons. The 1.0, 1.6 and 2.0kbp amplicons were amplified in 32 strains (36%), 2 strains (2%) and 1 strain (1%), respectively. The 1.0, 1.6 and 2.0 kbp amplicons contained one (aadA1a), two (aadB-aadA1b) and three cassettes (dhfrXII-orfF-aadA2), respectively, providing resistances against aminoglycosides (aadA1a, aadA1b, aadB, and aadA2) and trimethoprim (dhfrXII). The integron-carrying strains of biotype Gallinarum appeared in 1996 and acquired additional cassettes in 2000. Although the resistances to ampicillin, tetracycline and chloramphenicol are unrelated to class 1 integrons, relatively high prevalence of integron in biotype Gallinarum may be a dormant threat to the chemotherapy of the disease in the near future because of potency to acquire additional antibiotics resistances.     

Silsesquiazane/organic polymer blends as organic-inorganic hybrid materials

Silsesquiazane (SSQZ), one of the branched forms of polysilazane, was blended with polystyrene (PS), poly(methyl methacrylate) (PMMA), poly(iso-butyl methacrylate) (PBMA), and poly(vinyl acetate) (PVAc) to produce organic-inorganic hybrid materials. The polymers were selected to provide specific interaction, such as ??-?? interaction or hydrogen bonding, with SSQZ. AFM studies revealed that carbonyl containing polymers, PMMA, PBMA, and PVAc were miscible with SSQZ while PS was immiscible. DSC analysis of the hybrids also supported the miscibility behaviours of the system. The glass transition behaviour of SSQZ/PS showed individual transition temperature corresponding to the each component while SSQZ/carbonyl-containing polymers displayed one transition temperature that matched with the theoretically calculated values following the Kwei equation. Among the miscible hybrid system, the interaction with SSQZ increased in the order of PMMA> PBMA> PVAc, as determined by the q value in the Kwei equation. This result was confirmed by determining the degree of hydrogen bonding in FT-IR spectra. Thermal stability of organic polymers was improved by incorporating SSQZ regardless of the miscibility.     

Evaluation of regional climate scenario data for impact assessment of climate change on rice productivity in Korea

Spatial evaluation of the uncertainty associated with climate data would allow reliable interpretation of simulation results for regional crop yield using gridded climate data as input to a crop growth model. The objective of this study was to examine the spatial uncertainty of regional climate model data through determining optimal seeding date with the ORYZA2000 model for assessment of climate change impact on rice productivity in Korea. The optimal seeding date was determined at each grid point using regional climate model outputs under the RCP 8.5 scenarios. In major rice production areas such as inland plain regions, where temperatures of regional climate data were relatively accurate, the optimal seeding date determined using those gridded data were reasonable. However, areas with complex terrains including areas near bodies of water, e.g. coastal areas, riverbasins, lakes, and mountainous areas, had a relatively large uncertainty of the optimal seeding date determined using the regional climate data. These results indicated that the uncertainty of regional climate data at a high spatial resolution of 12.5 km should be taken into account in the regional impact assessment based on crop growth simulations in Korea. In addition, further studies would be merited to assess the impact of climate change on rice yield at an ultra-high spatial resolution of 1 km in Korea. Crop yields were projected to decrease after the 2020s when crop yield simulations from inland plain areas were considered, which suggested that adaptation strategies should be established and implemented in the near future.