Use of a fractal-like gold nanostructure in surface-enhanced raman spectroscopy for detection of selected food contaminants

The safety of imported seafood products because of the contamination of prohibited substances, including crystal violet (CV) and malachite green (MG), raised a great deal of concern in the United States. In this study, a fractal-like gold nanostructure was developed through a self-assembly process and the feasibility of using surface-enhanced Raman spectroscopy (SERS) coupled with this nanostructure for detection of CV, MG, and their mixture (1:1) was explored. SERS was capable of characterizing and differentiating CV, MG, and their mixture on fractal-like gold nanostructures quickly and accurately. The enhancement factor of the gold nanostructures could reach an impressive level of approximately 4 x 10(7), and the lowest detectable concentration for the dye molecules was at approximately 0.2 ppb level. These results indicate that SERS coupled with fractal-like gold nanostructures holds a great potential as a rapid and ultra-sensitive method for detecting trace amounts of prohibited substances in contaminated food samples.     

Estimating Distance Sampling Detection Functions When Distances Are Measured With Errors

Distance sampling methods assume that distances are known but in practice there are often errors in measuring them. These can have substantial impact on the bias and precision of distance sampling estimators. In this paper we develop methods that accommodate both systematic and stochastic measurement errors. We use the methods to estimate detection probability in two surveys with substantial measurement error. The first is a shipboard line transect survey in the North Sea in which information on measurement error comes from photographically measured distances to a subset of detections. The second is an aerial cue-counting survey off Iceland in which information on measurement error comes from pairs of independently estimated distances to a subset of detections. Different methods are required for measurement error estimation in the two cases. We investigate by simulation the properties of the new estimators and compare them to conventional estimators. They are found to perform better than conventional estimators in the presence of measurement error, more so in the case of cue-counting and point transect estimators than line transect estimators. An appendix on the asymptotic distributions of conditional and full likelihood estimators is available online.     

Freely dissolved PCDD/F concentrations in the Frierfjord,Norway: comparing equilibrium passive sampling with “active” water sampling

Introduction  

Equilibrium passive samplers consisting of 55-μm polyoxymethylene (POM) and 170-μm polydimethylsiloxane were tested for the analysis of polychlorinated dibenzodioxin/furan (PCDD/F) in the pore water and overlying water of the Frierfjord, a bay in southern Norway. This fjord is heavily polluted with PCDD/Fs due to emissions from a former Mg smelter.     

Genetic diversity and relationships between wild and cultivated olives (<Emphasis Type="Italic">Olea europaea</Emphasis> L.) in Sardinia as assessed by SSR markers

The genetic relationships within and between wild and cultivated olives were examined and clarified in an isolated and restricted area, such as the Mediterranean island of Sardinia. Wild (21 individuals) and cultivated olive trees (22 local cultivars from a germplasm collection and 35 ancient trees) were genotyped by means of 13 SSR loci. Five cases of synonymy were observed and nine distinct genotypes were identified in the collection. Five novel genotypes were also detected among the ancient trees. Differences on the allelic composition and heterozygosity levels were found between wild and cultivated trees. Model-based clustering method classified the olive trees into two major gene pools: (a) wild genotypes and (b) local cultivars from the collection and from heritage olives. Regarding the cultivated plant material, we observed that: (a) most of the Sardinian cultivars shared the same allelic profiles with the ancient cultivated trees and (b) the majority of these cultivars and all the novel genotypes were not related to any other cultivars included in this study. These findings as well as the detection of unique alleles and a certain wild genetic background at some cultivars revealed by the Bayesian analysis may indicate their autochthonous origin. The synonymy cases found between local cultivars and Italian mainland cultivars indicate interchange of genetic material among these growing areas, suggesting thus a possible allochthonous origin. The information obtained can assist in the management of an olive collection and sheds some light on the survival of true oleasters and the origin of Sardinian cultivars.     

Physiological,morphological, chemical and genomic diversities of different origins of thyme (<Emphasis Type="Italic">Thymus vulgaris</Emphasis> L.)

For the selection of donors with valuable characteristics for breeding, 39 thyme accessions were evaluated in three years according to a staggered schedule. The criteria investigated were: winter hardiness, beginning of flowering, growth height, yield of the dry herb, content of essential oil, composition of the essential oil, DNA content of cell nuclei and number of chromosomes. The most strongly varying traits between the populations were the yield of dry herb, the content of essential oil and the content of volatile phenols with coefficients of variation (CV) between CV 40% and 50%. The largest variation within a population was detected for the yield of dry herb (CV 25–46%) and the content of essential oil (CV 17–48%). The homogeneity of the populations was different. The minimal average coefficient of variation of all traits (CV 19%) was determined in the population of the cultivar ‘Varico II’ and in a population from Lithuania. The ploidy level of T. vulgaris was diploid (2n = 30).     

Soil organic matter dynamics and nitrogen availability in response to site preparation and management during revegetation in tropical Central Queensland,Australia

Purpose  

There is considerable interest in finding a cost-effective method of site preparation that effectively controls weeds during planting and further reduces the need for recurring herbicide applications. In this study, two weed control methods, herbicide and scalping, were examined. Both methods may have implications for soil organic matter (SOM) dynamics and nitrogen (N) which could consequently affect plant survival and vegetation establishment. This study aimed to investigate the dynamics of SOM, carbon (C) and N pools under site manipulation practices and the associated early plant survival and growth in tropical Australia.     

Spatial patterns of adenylate kinase,catalase, endopeptidase and fructose-1,6-diphosphatase encoding genes allelic variation in <Emphasis Type="Italic">Aegilops tauschii</Emphasis> Coss.

Investigation of spatial patterns of adenylate kinase, catalase, endopeptidase and fructose-1,6-diphosphatase encoding genes (Ak, Cat1, Cat2, Ep, Fdp) allelic variation in Aegilops tauschii was carried out. About 300 accessions, representing all the species range were taken for the study. Cat2 and Fdp loci are completely monomorphic in ssp. strangulata and in the western part of ssp. tauschii range, as well. Both Cat2 and Fdp are highly polymorphic in the eastern part of ssp. tauschii range, with the patterns of this polymorphism being discordant in these two loci. Ak ¹⁰⁸, a rare allele with sporadical spatial occurrence, was found in ssp. tauschii only. On the contrary, Ak ⁹² is absent in ssp. tauschii: it is the most common Ak allele in ssp. strangulata in Precaspian Iran, the most moist part of the area, and is very rare in other parts of ssp. strangulata area. Ep is a highly polymorphic locus with the highest level of variation in the west of Ae. tauschii area, where this species had originated. Ep allele variation patterns are rather similar in ssp. tauschii and ssp. strangulata. The data reveal the adaptive nature of Ak, Cat2, and Fdp allele variation, while Ep polymorphism seems to be mostly neutral.     

Using Copulas to Introduce Dependence in Dose-Response Modeling of Multiple Binary Endpoints

We propose a method for introducing dependence in the dose-response modeling of multiple dichotomous endpoints. The method uses a copula to define a joint multivariate distribution that is consistent with predetermined marginal distributions representing the individual dose-response functions for each endpoint. Use of copulas allows the marginal dose-response functions for each dose-endpoint combination to be unrestricted in form. An application of particular relevance to risk assessment is the dose-response modeling of multiple types of tumors in test animals exposed to a carcinogen, allowing for tumors at different sites in the same animal to be statistically dependent. In addition, the method can be used to address the possibility that different tissues/organs are subject to different internal doses and possibly different active moieties. These applications are illustrated with rodent cancer bioassay data from two example compounds.     

Effect of soil sealing on the microbial biomass,N transformation and related enzyme activities at various depths of soils in urban area of Beijing,China

Purpose  

Sealing of soils prevents the exchange of gas, water and nutrient between soil and other environmental compartments, and affects urban N flux, thereby resulting in certain negative impacts on soil functioning and urban environment. However, little information is available on the biogeochemical cycling and biological activities after sealing of soils in urban areas. The aim of this study was to assess the effects of soil sealing on N transformation and associated microbial properties.