Improving the density of jammed disordered packings using ellipsoids

Packing problems, such as how densely objects can fill a volume, are among the most ancient and persistent problems in mathematics and science. For equal spheres, it has only recently been proved that the face-centered cubic lattice has the highest possible packing fraction phi=pi/18 approximately 0.74. It is also well known that certain random (amorphous) jammed packings have phi approximately 0.64. Here, we show experimentally and with a new simulation algorithm that ellipsoids can randomly pack more densely-up to phi= 0.68 to 0.71 for spheroids with an aspect ratio close to that of M&M's Candies-and even approach phi approximately 0.74 for ellipsoids with other aspect ratios. We suggest that the higher density is directly related to the higher number of degrees of freedom per particle and thus the larger number of particle contacts required to mechanically stabilize the packing. We measured the number of contacts per particle Z approximately 10 for our spheroids, as compared to Z approximately 6 for spheres. Our results have implications for a broad range of scientific disciplines, including the properties of granular media and ceramics, glass formation, and discrete geometry.     

Shape and intraporosity of topsoil aggregates under maquis and pasture in the Mediteranean region

The clearing of Mediterranean maquis along with the creation of new pasture land has been an important factor of soil and land degradation in the Mediterranean region. The present research compared soil aggregates and their intraporosity in paired pasture/maquis plots in central E Sardinia (Italy), to study the impact of land use change on soil structure. Undisturbed surface horizons were sampled for thin‐section analysis. Aggregate shape was compared and intraporosity was studied for representative aggregates at different depths. Furthermore, the interaction of root activity and grazing under pasture and maquis cover was discussed. The outcomes revealed a complex interplay of trampling and root activity effects. A decrease (–44%) in total voids (regular pores), along with higher aggregate regularity, was observed under pasture in the 0–2 cm layer, and an increase (+261%) in 50–100 μm planar (elongated) pores was determined in the 2–4 cm layer, suggesting a possible surface compaction due to trampling and an increased subsurface fine root activity by the grassland vegetation.     

New insights into the photoreactivity of the organophosphorus pesticide fenthion: a sigma aryl cation as a key intermediate in the photodecomposition

The primary photodegradation processes of fenthion (FN), one of the most photosensitive pesticides used in agriculture, have been investigated by combining laser flash photolysis and steady-state measurements. The triplet state of FN is produced quite efficiently (Phi(isc) approximately 0.3). However, this excited state does not seem to trigger the primary photodecomposition pathways of the pesticide. It is demonstrated that FN undergoes photoheterolysis via the excited singlet state and gives the corresponding singlet "sigma aryl cation". Chemical evidence for the generation of this transient species is given by trapping with typical "sigma nucleophiles" such as chloride and methanol. This photodegradation mechanism is, in part, quite different with respect to what is known to date and may account for the formation of the O,O-dimethyl S-[3-methyl-4-(methylthio)phenyl] phosphorothioate discovered as a novel photodegradation product of FN.     

Tetraploid and hexaploid wheats express identical isoforms of nsLTP1

Nonspecific lipid-transfer proteins (nsLTPs) have been recognized as allergens in several plant species among which are cereals important in human nutrition. In this report, we purified a 9600 +/- 1 Da protein from both soft wheat and farro bran. Mass spectrometric analyses revealed that these proteins are identical, belong to the nsLTP1 class, and have high sequence homology with nsLTP1 isolated from other cereal species. Their identification was further supported by the ability of the soft wheat nsLTP1 to transfer pyrene-labeled lipids between donor and acceptor membranes. The results are discussed in view of the increasing diffusion on the markets of bran-rich products.     

An exploratory study of potential As and Pb contamination by atmospheric deposition in two urban vegetable gardens in Rome,Italy

Purpose

A preliminary study was carried out in Rome (Italy) to assess the potential role of atmospheric deposition in trace element contamination in urban vegetable gardens relative to human health risk from crop consumption.

Materials and methods

Two sites were selected on the basis of previously known contamination issues. Atmospheric deposition, parent material, soils properties affecting trace element mobility, and various anthropogenic inputs were considered. Soil samples were taken at depth from two points in each garden, within 5 cm of sampled crops. Inputs and crops were sampled and analysed for As and Pb content. A rain and dust gauge was set up in each garden for the duration of 93 days (late spring to late summer) for atmospheric deposition sampling.

Results and discussion

Atmospheric deposition influx was high at both sites (2.22 and 2.32 As and 2.67 and 3.42 Pb μg m^?3 day^?1). Soil pH was between 6.70 and 7.57 and texture varied from loamy sand to clay loam (3.4 to 31.9 % clay content). CEC ranged between 21.6 and 54.2 meq/100 g within rooting depth, rising almost commensurately with soil organic carbon (SOC) content (1.87–8.37 %). Somewhat high total soil Pb content (80.8–522.7 ppm) contrasted with negligible exchangeability and crop content (<0.01 ppm). Total soil As (17.0–32.0 ppm) corresponded with exchangeable and crop As for one site in one of the gardens. Leaves evinced high As accumulation levels (16.0–41.2 ppm) in all crops. High amounts of atmospheric Pb combined with negligible amounts of extractable Pb and Pb plant tissue content point to particulate inhalation and ingestion as a main health threat in the case of Pb. In contrast, food intake seems to be of greater concern relative to high As contamination. Greater soil As solubility may be explanatory, but the mostly low amounts of extractable As and the high atmospheric As suggest an airborne route being playing an important role.

Conclusions

Preliminary results suggest that research on trace element contamination in urban gardens should consider atmospheric deposition as a major contributing source.

     

Clay minerals,oxyhydroxide formation,element leaching and humus development in volcanic soils

A weathering sequence with soils developing on volcanic, trachy-basaltic parent materials with ages ranging from 100–115,000 years in the Etna region served as the basis to analyse and calculate the accumulation and stabilisation mechanisms of soil organic matter (SOM), the transformation of pedogenic Fe and Al, the formation and transformation of clay minerals, the weathering indices and, by means of mass-balance calculations, net losses of the main elements. Although the soils were influenced by ash depositions during their development and the soil on the oldest lava flow developed to a great extent under a different climate, leaching of elements and mineral formation and transformation could still be measured. Leaching of major base cations coupled with a corresponding passive enrichment of Al or Fe was a main weathering mechanism and was especially pronounced in the early stages of soil formation due to mineral or glass weathering. With time, the weathering indexes (such as the (K + Ca)/Ti ratio) tend to an asymptotic value: chemical and mineralogical changes between 15,000 and 115,000 years in the A and B horizons were small. In contrast to this, the accumulation of newly formed ITM (imogolite type materials) and ferrihydrite showed a rather linear behaviour with time. Weathering consisted of the dissolution of primary minerals such as plagioclase, pyroxenes or olivine, the breakdown of volcanic glass and the formation of secondary minerals such as ITM and ferrihydrite. The main mineral transformations were volcanic glass ? imogolite ? kaolinite (clay fraction). In the most weathered horizons a very small amount of 2:1 clay minerals could be found that were probably liberated from the inner part of volcanic glass debris. The rate of formation and transformation of 2:1 clay minerals in the investigated soils was very low; no major changes could be observed even after 115,000 years of soil evolution. This can be explained by the addition of ash and the too low precipitation rates. In general, soil erosion played a subordinate role, except possibly for the oldest soils (115,000 years). The youngest soils with an age < 2000 years had the highest accumulation rate of organic C (about 3.0 g C/m²/year). After about 15,000 years, the accumulation rate of organic C in the soils tended to zero. Soil organic carbon reached an asymptotic value with abundances close to 20 kg/m² after about 20,000 years. In general, the preservation and stabilisation of SOM were due to poorly crystalline Al- and Fe-phases (pyrophosphate-extractable), kaolinite and the clay content. These parameters correlated well with the organic C. Imogolite-type material did not contribute significantly to the stabilisation of soil organic matter.     

Residue levels and storage responses of nectarines, apricots, and peaches after dip treatments with fludioxonil fungicide mixtures

Mature apricots (Prunus armeniaca), nectarines [Prunus persica var. nectarine (Ait.)], and peaches [P. persica (L.) Batsch.] were subjected to a 2 min dip treatment with warm water at 48 degrees C or with fludioxonil (FLU) at 100 mg L-1 and 20 degrees C or at 25 mg L-1 FLU and 48 degrees C and then stored at 5 degrees C and 90-95% relative humidity (RH) for 1 week plus 1 additional week at 18 degrees C and approximately 80% RH. Fruit residue uptake was determined as a function of fungicide concentration, dip temperature, treatment time (only on nectarines), and fruit storage conditions. FLU residue level was closely related to fungicide concentration and treatment temperatures and was dependent on fruit species. FLU residues showed great persistence over both storage and shelf life. Fruit dipping in water at 48 degrees C effectively reduced decay development in cvs. 'May Grand' nectarines and 'Pelese' apricots but was ineffective in cvs. 'Red Top' and 'Sun Crest' nectarines during 7 days of storage compared with nontreated fruit. Decay rates in cvs. 'Glo Haven' peaches and 'Fracasso' apricots were very low in fruit dipped in water at both 20 and 48 degrees C. Fungicide treatments at 20 and 48 degrees C resulted in the total or almost total suppression of decay in all cultivars. During shelf life, fruit became very prone to decay, averaging 25.7-100% depending on the cultivar. Fruit dipping in hot water effectively reduced decay in 'Pelese' and 'Fracasso' apricots, 'Sun Crest' peaches, and 'May Grand' nectarines as compared to control, but was ineffective in 'Glo Haven' and 'Red Top' peaches. Fungicide treatments at 20 degrees C were more effective than hot water in most cultivars. The combination of FLU with water at 48 degrees C further improved the fungicide performance. Indeed, reduced levels (a fourth) of active ingredient were required to achieve a control of decay comparable to that for treatment at 20 degrees C. Residue levels in fruit after treatment with 100 mg L-1 FLU at 20 degrees C or with 25 mg L-1 FLU at 48 degrees C averaged approximately 0.6-2 mg kg-1, which were notably lower than the maximum residue limit (5 mg kg-1) allowed in the United States for stone fruit.     

Astaxanthin Improves Human Sperm Capacitation by Inducing Lyn Displacement and Activation

Astaxanthin (Asta), a photo-protective red pigment of the carotenoid family, is known for its multiple beneficial properties. In this study, the effects of Asta on isolated human sperm were evaluated. Capacitation involves a series of transformations to let sperm acquire the correct features for potential oocyte fertilization, including the generation of a controlled amount of reactive oxygen species (ROS), cholesterol depletion of the sperm outer membrane, and protein tyrosine phosphorylation (Tyr-P) process in the head region. Volunteers, with normal spermiogram values, were divided in two separate groups on the basis of their ability to generate the correct content of endogenous ROS. Both patient group (PG) and control group (CG) were analysed for Tyr-phosphorylation (Tyr-P) pattern and percentages of acrosome-reacted cells (ARC) and non-viable cells (NVC), in the presence or absence of Asta. In addition, the involvement of ROS on membrane reorganization and the presence of Lyn, a Src family kinase associated with lipid rafts, were investigated. Results show that Lyn is present in the membranes of human sperm, mainly confined in midpiece in resting conditions. Following capacitation, Lyn translocated to the head concomitantly with raft relocation, thus allowing the Tyr-P of head proteins. Asta succeeded to trigger Lyn translocation in PG sperm thus bypassing the impaired ROS-related mechanism for rafts and Lyn translocation. In this study, we showed an interdependence between ROS generation and lipid rafts and Lyn relocation leading the cells to undergo the successive acrosome reaction (AR). Asta, by ameliorating PG sperm functioning, may be utilised to decrease male idiopathic infertility.     

Neutrophil extracellular traps in sheep mastitis

Neutrophil extracellular traps (NETs) are structures composed of DNA, histones, and antimicrobial proteins that are released extracellularly by neutrophils and other immune cells as a means for trapping and killing invading pathogens. Here, we describe NET formation in milk and in mammary alveoli of mastitic sheep, and provide a dataset of proteins found in association to these structures. Nucleic acid staining, immunomicroscopy and fluorescent in-situ hybridization of mastitic mammary tissue from sheep infected with Streptococcus uberis demonstrated the presence of extranuclear DNA colocalizing with antimicrobial proteins, histones, and bacteria. Then, proteomic analysis by LTQ-Orbitrap Velos mass spectrometry provided detailed information on protein abundance changes occurring in milk upon infection. As a result, 1095 unique proteins were identified, of which 287 being significantly more abundant in mastitic milk. Upon protein ontology classification, the most represented localization classes for upregulated proteins were the cytoplasmic granule, the nucleus, and the mitochondrion, while function classes were mostly related to immune defence and inflammation pathways. All known NET markers were massively increased, including histones, granule proteases, and antimicrobial proteins. Of note was the detection of protein arginine deiminases (PAD3 and PAD4). These enzymes are responsible for citrullination, the post-translational modification that is known to trigger NET formation by inducing chromatin decondensation and extracellular release of NETs. As a further observation, citrullinated residues were detected by tandem mass spectrometry in histones of samples from mastitic animals. In conclusion, this work provides novel microscopic and proteomic information on NETs formed in vivo in the mammary gland, and reports the most complete database of proteins increased in milk upon bacterial mastitis.

Electronic supplementary material

The online version of this article (doi:10.1186/s13567-015-0196-x) contains supplementary material, which is available to authorized users.     

Spongiosis Hepatis in a Wild Aquarium-Maintained Red Irish Lord

An aquarium-maintained female Red Irish Lord Hemilepidotus hemilepidotus presented with severe coelomic distension. The fish was anesthetized for ultrasonographic examination, which highlighted multiple cyst-like lesions in the liver and a distended ovary that was filled with follicles and an inspissated egg mass. Multiple exploratory celiotomies were performed for egg mass removal, liver biopsy, ovariosalpingectomy, and body wall rupture repair. Fourteen weeks after original presentation, and subsequent to 2 weeks of anorexia, the fish died. At necropsy, the liver was severely enlarged and distorted by multiple, coalescing, cyst-like spaces with no grossly normal liver parenchyma. The spleen also contained a raised cyst-like structure. Microscopically, the liver had well-demarcated foci of hepatocyte loss with retained meshworks of interconnected, perisinusoidal stellate cells. The fluid-filled spaces surrounded by stellate cells were not lined by epithelium or endothelium. The spleen had similar fluid-filled spaces formed of stellate cells. The cyst-like lesions in the liver were consistent with spongiosis hepatis; however, the concurrent development of a morphologically comparable lesion in the spleen is not typical of spongiosis hepatis cases. This case may represent the first report of spontaneously occurring spongiosis hepatis in a fish maintained in a public aquarium, as well as the first report in a fish of spongiosis hepatis-like lesions in an organ other than the liver.

Received May 19, 2015; accepted September 3, 2015