An assessment of the variation in the prevalence of renal myxosporidiosis and hepatitis in wild brown trout, Salmo trutta L., within and between rivers in South-West England

The prevalence of renal myxosporidiosis in wild brown trout, Salmo trutta, in seven river catchments in South-West England was investigated. Three hundred and twenty-seven fish were sampled from 16 sites, of which 54 (16.5%) were found, by histological examination of the kidney, to be infected with Tetracapsuloides bryosalmonae, the causative agent of proliferative kidney disease. No T. bryosalmonae infected fish were found in one river catchment, in other catchments the prevalence ranged from 2.5% to 36%. Hepatitis was strongly associated with the presence of T. bryosalmonae (odds ratio = 20.2, P < 0.001). Chloromyxum schurovi was found in 25% of fish and in six of seven river catchments, where the prevalence ranged from 2.4% to 63%. There was a strong negative association between the presence of T. bryosalmonae and C. schurovi (odds ratio = 0.10, P < 0.001). A hierarchical binomal model of the variance indicated that for T. bryosalmonae most of the variance existed at the site level, whereas for C. schurovi most variance existed at the river catchment level, suggesting that prevalence of T. bryosalmonae infection is determined largely by site level factors (e.g. presence of alternate host). The intraclass correlation coefficients (ICC) were 0.2 and 0.4 for T. bryosalmonae and C. schurovi, respectively, indicating the latter has higher effective transmission because of a higher level of infectiousness and/or abundance of alternate oligochaete hosts. These values can be used in future studies to estimate the sample sizes required to generate prevalence estimates with the required precision.     

Interactions between fishing strategies of Nephrops trawlers in the Bay of Biscay and Norway lobster diel activity patterns

Abstract  Norway lobster, Nephrops norvegicus (L.), in the Bay of Biscay exhibited diel activity patterns with more individuals outside their burrows at dawn and dusk, increasing catchability at these times. Data from an on board observer programme on Nephrops trawlers between 2002 and 2005 were used to assess variability in catchability in commercial catches. Catch numbers per haul varied spatially and between months, but no signal for diel variations was found. Fishing strategies developed by the Nephrops trawlers had several components. On a seasonal level, they started around sunrise. On a haul level, haul duration decreased from haul to haul, with the longest hauls taking place at the time of the highest catchability. By-catch of hake, Merluccius merluccius (L.), increased more than proportionally with haul duration.     

Promising approaches to the purification of soils and groundwater from hydrocarbons (A Review)

Soils and waters are affected by oil spills in the course of oil production and hydrocarbon leakages because of the corrosion of underground reservoirs, as well as the filtration of hydrocarbons from the tailing ponds formed during the extraction of oil from oil sands. The conventional technology for the withdrawal of contaminated water and its purification on the surface is low-efficient and expensive. New approaches are proposed for the in situ purification of soils and groundwater. To accelerate the oxidation, active substances atypical for the supergenesis zone are used: peroxides of metals and hydrogen. The efficiency of hydrogen peroxide significantly increases when the oxidation is catalyzed by Fe²⁺ or Fe³⁺ (Fenton reaction). The effects of Fe(III), sulfates, and carbon dioxide as electron acceptors are studied under anaerobic conditions (with oxygen deficit).     

Influence of Rooting Media on Chrysopogon Zizanioides (L.) Roberty

The present study was carried out to find the influence of some organic materials on the optimum biomass production of Chrysopogon zizanioides (L.) Roberty (Vetiver) using soil (S), vermicompost (VC), cow dung (CD) and coir pith (CP) at different ratios. The final day results showed that the ideal combination for the growth of the Vetiver is 1:1:1:1 v/v ratio of VC/CD/CP/S. The pH, electrical conductivity (EC), nitrogen (N)- phosphorus (P)- potassium (K), organic carbon (OC), and carbon (C)/N ratio showed in 1:1:1:1 v/v ratio of (VC/CD/CP/S), on 120th day were 7.3, 0.38 dS m^?1, 1.36%, 0.11%, 8.7%, 20.5% and C/N ratio is 15:1. The root and shoot length, fresh weight, dry weight, number of culms, and total chlorophyll content of Chrysopogon zizanioides were 65cm, 197 cm, 312 g, 104.4 g, 36 culms/plant and 40.57 mg/g at 1:1:1:1 v/v ratio of (VC/CD/CP/S) treatment and compared to control sets, the increasing ratio were 6:1, 3:1, 12:1, 12:1, 3:1, 2:1 respectively.     

Determination of chlorate and chlorite and mutagenicity of seafood treated with aqueous chlorine dioxide.

The use of chlorine dioxide (ClO(2)) as a potential substitute for aqueous chlorine to improve the quality of seafood products has not been approved by regulatory agencies due to health concerns related to the production of chlorite (ClO(2)(-)) and chlorate (ClO(3)(-)) as well as possible mutagenic/carcinogenic reaction products. Cubes of Atlantic salmon (Salmo salar) and red grouper (Epinephelus morio) were treated with 20 or 200 ppm aqueous chlorine or ClO(2) solutions for 5 min, and extracts of the treated fish cubes and test solutions were checked for mutagenicity using the Ames Salmonella/microsome assay. No mutagenic activity was detected in the treated fish samples or test solutions with ClO(2). Only the sample treated with 200 ppm chlorine showed weak mutagenic activity toward S. typhimurium TA 100. No chlorite residue was detected in sea scallops, mahi-mahi, or shrimp treated with ClO(2) at 3.9-34.9 ppm. However, low levels of chlorate residues were detected in some of the treated samples. In most cases, the increase in chlorate in treated seafood was time- and dose-related.     

Colorimetric and volumetric assays of colchicine in galenicals and in pharmaceutical preparations.

In the method described the amide group in the colchicine molecule is reduced with lithium aluminum hydride to the corresponding secondary amine. The latter is extracted with chloroform and then determined either colorimetrically by the copper dithiocarbamate reaction or volumetrically by dissolving in acid and titrating with sodium hydroxide or perchloric acid. The results were comparable with those obtained by the Egyptian Pharmacopoeia spectrophotometric method.     

Degradation of lignin in wheat straw during growth of the oyster mushroom (Pleurotus ostreatus) using off-line thermochemolysis with tetramethylammonium hydroxide and solid-state (13)C NMR.

The oyster mushroom (Pleurotus ostreatus) is widely cultivated on wheat straw (Triticum aestivum); however, there is a need to better understand the relationship between the chemical composition of the compost and mushroom growth. Wheat straw was degraded over a period of 63 days by P. ostreatus during which time it was sampled at weekly intervals. Off-line thermochemolysis with tetramethylammonium hydroxide and solid-state (13)C NMR were then used in the molecular characterization of the undegraded wheat straw and the degraded samples. The degraded wheat straw samples had a lower proportion of syringyl- to guaiacyl-derived moieties and cinnamyl- to guaiacyl-derived moieties than the undegraded control. There were increases in both guaiacyl and syringyl acid to aldehyde ratios with composting time, which showed that side-chain oxidation has been mediated by P. ostreatus. The (13)C NMR spectra confirmed the increase in carboxyl content but indicated that the overall lignin and methoxyl contents remained relatively constant, although some nonsystematic variations were observed. The spectra also showed a decrease in amorphous noncellulosic polysaccharides in relation to the crystalline cellulose upon degradation.     

Mutant Trp repressors with new DNA-binding specificities

Oligonucleotide-directed mutagenesis of the codons for glutamine-68 (Gln68), lysine-72 (Lys72), isoleucine-79 (Ile79), alanine-80 (Ala80), and threonine-81 (Thr81) of the Escherichia coli trpR (tryptophan aporepressor) gene was used to make mutant repressors with each of 36 different amino acid changes. Mutant repressors were tested for binding to each member of a set of 28 different operators closely related to the consensus trp operator. Of the 36 mutant repressors, 11 bind a subset of the 28 operators; 5 of these have new binding specificities. These new specificities indicate that the hydroxyl group of Thr81 makes a specific contact with one of the four critical base pairs in a trp operator half-site, and the methyl group of Thr81 determines specificity at a second, critical base pair. The Trp repressor does not use the first two amino acids of its "recognition alpha-helix," Ile79 and Ala80, to make sequence-specific DNA contacts, and interacts with its operator in vivo in a way fundamentally different from the way that phage lambda repressor, lambda Cro protein, and coliphage 434 repressor contact their respective binding sites.