Assignment of new loci to river buffalo chromosomes confirms the nature of chromosomes 4 and 5

Introduction Rapid development of the river buffalo physical map can be achieved by coupling its development to that of the cattle gene map. Syntenic conservation between cattle and buffalo has been demonstrated, mainly using somatic cell hybrids (de Hondt et al. 1991; El Nahas et al. 1993, 1996, 1998; de Hondt et al. 1997; El Nahta 1996; Oraby et al. 1977), and by using in situ hybridization as reviewed by Iannuzzi (1997). G- and R-banding comparisons between cattle (2n = 60) and river buffalo (2n = 50) chromosomes have revealed a large number of banding homologies between the two species, both at early-metaphase (Gupta and Ray -Chaudhury 1978; Di Berardino et al. 1981) and prometaphase stages (Iannuzzi et al. 1990). Banding homology indicates that the five river buffalo biarmed pairs originate from centric fusion translocation between two of ten homologous cattle autosomes, which is very supportive of the hypothesis that both species have a common ancestor (Wurster and Benirschke 1968). Based on cytological analysis and banding homology between cattle and buffalo chromosomes, the five biarmed chromosomes of the river buffalo BBU1, BBU2, BBU3, BBU4, BBU5 were thought to originate from fusion of cattle chromosome (BTA) 1/25; 2/23; 8/19; 5/28; and 16/29 respectively (Iannuzzi et al. 1990; Report of the Committee for the Standardization of Banded Karyotopes of the River Buffalo 1994). However, the analysis of synteny between molecular markers assigned to different cattle syntenic groups demonstrated that BBU1 results from fusion of BTA 1 and 27 rather than 1 and 25 (El Nahas et al. 1977). This called for expanding the analysis of syntenic relationships between marker loci to confirm the nature of the other biarmed buffalo chromosomes. The purpose of this study is to test synteny between markers in buffalo and to confirm the nature of the biarmed buffalo chromosomes 4 and 5, using marker loci and somatic cell hybrids.     

An assessment of carcass counting surveys with increasing time lapse following a simulated fish kill on a small upland stream

A simulated fish kill was conducted on a small upland stream in Northern Ireland by planting out hatchery‐produced brown trout Salmo trutta L. carcasses of various size categories. Standard, post‐fish kill, assessment walkover surveys were conducted over time intervals to determine the number of carcasses visible. The sample variance between individual surveyors was generally low, with good agreement between the observed counts for the three, discrete, size fractions of fish up to 72 hr after the simulated fish kill. Despite low discharge rates, shallow water and good accessibility to the experimental stream, only 52% of the small category fish (<8 cm L_F) were recorded 4 hr after the start of the simulated fish kill. Larger carcasses (>17 cm L_F) were more visible, and >90% were detected 48 hr after the start of the simulated fish kill. After 96 hr, all size fractions of carcasses had reduced significantly, and the variability between replicate surveys increased markedly.     

Factors Affecting the Slope of Head Rice Yield vs. Degree of Milling

Milling data of four long-grain rice cultivars were analyzed to determine the uniformity in the slope of their curves for head rice yield (HRY) versus the corresponding degree of milling (DOM). The data set for each cultivar comprised samples that had been subjected to various drying air conditions and durations and milled over a range of moisture contents. All treatment combinations were split and milled for either 15, 30, 45, or 60 sec in a McGill no. 2 laboratory mill to obtain HRY versus DOM data. Linear relationships between HRY and DOM, as observed in past research, were confirmed. This implies that as rice is milled to greater extents (higher DOM), the HRY decreases linearly. Within the bounds of the experimental levels tested, neither the drying air condition nor drying duration affected the rate at which HRY changed with DOM. However, the cultivar and the moisture content at which the rice was milled significantly (P < 0.05) influenced this rate. At higher milling moisture contents, the decrease in HRY per unit of increase in the DOM was greater than at lower moisture contents. While not conclusive, there was an indication of a relationship between the average kernel thickness of a cultivar and the HRY versus DOM slope.     

To sea or not to sea? Multiple lines of evidence reveal the contribution of non‐diadromous recruitment for supporting endemic fish populations within New Zealand's longest river

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Linking size‐based trophodynamics and morphological traits in marine fishes

The rule of thumb in marine trophodynamics indicates that the bigger an organism, the higher its trophic level (TROPH). This generalization leads to the assumption that fishes increase their TROPH with growth. However, a recent review showed that for many species, TROPH does not increase with body size, suggesting that size‐independent feeding is not rare in marine fishes. Here, we assessed some morphological traits of marine fishes that could potentially be used as indicators for the ability to vary TROPH with body size. Stable isotope values of nitrogen were used as a proxy TROPH. The specific objectives were as follows: (a) to evaluate the relationship between the oral gape and the trophodynamic trend and (b) to quantify the relevance of 11 external morphological traits in determining the size‐based trophodynamics. We used random forest models to identify the morphological traits that would help predict which species would have the potential to increase TROPH with growth and which would have not. The selected traits included the pelvic fin relative position, the dorsal fin shape, total length, and relative mouth size. Our results also showed a marked relationship between the rate of increase in the oral gape and TROPH. The analyses presented here provide the first comprehensive and quantitative review aiming at linking the trophodynamics of marine fishes with external morphological traits.     

Examining the impact of shade on above-ground biomass and normalized difference vegetation index of C3 and C4 grass species in North-Western NSW,Australia

Previous investigations have detected a directional trend in the normalized difference vegetation index (NDVI) of pastures around scattered paddock trees and identified shade from the tree as the most likely causal factor. This study uses a field experiment to quantify the effect of varying levels of shade on the above-ground biomass and NDVI of three grass species native to Australia (Microlaena stipoides, C₃, shade tolerant; Austrodanthonia richardsonii, C₃, prefers full sunlight, and Chloris ventricosa, C₄, prefers full sunlight) in different seasons. The study demonstrates that shade had little influence on the above-ground biomass of C₃ species but significantly reduced biomass in the C₄ species. Until early winter, the NDVI of each species was generally significantly higher in all shaded treatments than in the no-shade treatment. This suggests that shaded plants retained a higher proportion of green biomass and/or changed leaf shape, increased leaf area and chlorophyll content. Regardless, although not proven in this experiment, it is likely shade prolonged the retention of green plant material into mid to late winter. Overall, this experiment explains the directional trends in NDVI around scattered trees found in previous work and suggests that shade from scattered trees prolongs green pasture production in a range of native grass species, without loss of C₃ pasture biomass.     

The activity and expression of chitinase in the equine lung and its activity in normal horses and animals with recurrent airway obstruction

Recurrent airway obstruction (RAO) is a chronic inflammatory condition in equine lung, which may share a common immunological basis with human asthma, in which dysregulated Th2 responses occur. Mammals express chitinases and chitinase-like proteins, two of which are active enzymes, chitotriosidase and acidic mammalian chitinase (AMCase). Both enzymes are upregulated in a range of inflammatory conditions, including asthma. We investigated the activity of chitinase in bronchoalveolar lavage fluid from horses with and without RAO in response to organic dust challenges. No significant differences were found in activity, although in one study RAO animals had elevated chitinase activity that fell short of statistical significance. The pH optimum and pH lability of the activity was consistent with the presence of chitotriosidase. RT-PCR amplification of the mRNA encoding chitotriosidase and AMCase in normal equine lung showed that chitotriosidase, but not AMCase, is expressed in trachea, bronchi, and peripheral lung tissue. The gene for chitotriosidase was identified from the Equus caballus (horse) genome 1.1 database and its similarity to the same genes from other species was determined. The results of this study indicate that the involvement of chitotriosidase in RAO is uncertain.