Molecular evidence of rat bocavirus among rodents in Peninsular Malaysia

Rat bocavirus (RBoV) and rodent bocavirus (RoBoV) have previously been detected in Rattus norvegicus; however, these viruses have not been reported in rodent populations in Malaysia. We investigated the presence of RBoV and RoBoV in archived rodent specimens. DNA barcoding of the rodent cytochrome c oxidase gene identified five different species: Rattus tanezumi R3 mitotype, Rattus tiomanicus, Rattus exulans, Rattus argentiventer, and Rattus tanezumi sensu stricto. Three spleens were positive for RBoV (1.84%; 3/163), but no RoBoV was detected. Phylogenetic analyzes of the partial non-structural protein 1 gene grouped Malaysian RBoV strains with RBoV strains from China. Further studies among rats from different geographical locations are warranted for this relatively new virus.     

Serum Krebs von den Lungen-6 for Predicting the Severity of COVID-19 Lung Injury: A Systematic Review and Meta-Analysis

Introduction:Lung injury is common in COVID-19 patients. The severity of lung injury appears to be reflected in serum KL-6, a glycoprotein expressed on type II alveolar epithelium. This study aims to assess the role of serum KL-6 in reflecting the severity of lung injury in COVID-19 patients. Methods:A systematic search was conducted in Scopus, PubMed, Wiley Online Library, and ProQuest. Articles were screened based on several eligibility criteria and assessed for study quality using NOS. Results:This systematic review included four studies involving a total of 151 adult COVID-19 patients. Pooled analysis revealed that serum KL-6 was significantly higher in severe patients (SMD = 1.16; 95% CI = 0.69–1.63) with moderately high pooled sensitivity (79%; 95% CI = 61–91%) and specificity (86%; 95% CI = 72–95%). Conclusion:High serum KL-6 may depict more severe lung injury in COVID-19 patients with moderately high sensitivity and specificity. Key Words: Biomarker, COVID-19, Infectious disease, Krebs von den Lungen-6, Lung injury     

Callus Induction and Regeneration from Anther Cultures of Indonesian Indica Black Rice Cultivar

Journal of Crop Science and Biotechnology - The assembly of superior varieties and collection of rice germplasm involves the process of selecting and storing elders that have superior genotypic...     

Epiphytotics of chickpea Ascochyta blight in Turkey as influenced by climatic factors

Journal of Plant Diseases and Protection - Chickpea Ascochyta blight caused by Didymella rabiei is one of the most important fungal diseases affecting yield and seed quality negatively in Turkey....     

Molecular characterization of Malaysian fowl adenovirus (FAdV) serotype 8b species E and pathogenicity of the virus in specific-pathogen-free chicken

BackgroundInclusion body hepatitis (IBH) is an economically important viral disease primarily affecting broiler and breeder chickens. All 12 serotypes of fowl adenovirus (FAdV) can cause IBH.ObjectivesTo characterize FAdV isolates based on phylogenetic analysis, and to study the pathogenicity of FAdV-8b in specific-pathogen-free (SPF) chickens following virus inoculation via oral and intramuscular (IM) routes.MethodsSuspected organ samples were subjected to virus isolation and polymerase chain reaction (PCR) for FAdV detection. Hexon gene sequencing and phylogenetic analysis were performed on FAdV-positive samples for serotype identification. One FAdV-8b isolate, UPM/FAdV/420/2017, was selected for fiber gene characterization and pathogenicity study and was inoculated in SPF chickens via oral and IM routes.ResultsThe hexon gene phylogenetic analysis revealed that all isolates belonged to FAdV-8b. The fiber gene-based phylogenetic analysis of isolate UPM/FAdV/420/2017 supported the grouping of that isolate into FAdV species E. Pathogenicity study revealed that, chickens infected with UPM/FAdV/420/2017 via the IM route had higher clinical score values, higher percent mortality, higher degree of the liver lesions, higher antibody response (p < 0.05), and higher virus shedding amounts (p < 0.05) than those infected via the oral route. The highest virus copy numbers were detected in liver and gizzard.ConclusionsFAdV-8b is the dominant FAdV serotype in Malaysia, and pathogenicity study of the FAdV-8b isolate UPM/FAdV/420/2017 indicated its ability to induce IBH in young SPF chickens when infected via oral or IM routes.     

EFFICACY OF SUPPLEMENTAL CALCIUM ON THE GROWTH OF THREE RICE GENOTYPES DIFFERING IN SALT TOLERANCE

The effect of supplemental calcium (Ca) on the growth of three rice genotypes PVSB9, NS15, and Pokkali were assessed. Different morphological characters were studied among which the percent relative- plant height, total tillers, root dry weight (RDW), shoot dry weight (SDW), and total dry matter (TDM) were higher in Pokkali and PVSB9, but lower in NS15 under different salinity and supplemental Ca levels. These morphological characteristics significantly decreased with increasing salinity levels grown at different Ca levels, but significantly increased with increasing supplemental Ca levels. The interaction effect of genotypes and salinity levels, and genotypes and Ca levels were significant, where a negative relationship with increasing salinity levels and a positive relationship with increasing supplemental Ca levels were found. The interaction effect of salinity and Ca levels on all morphological parameters was significant, where these characteristics increased due to increasing the supplemental Ca levels at all the levels of salinity.     

Fruiting behavior of dipterocarps in two consecutive episodes of general flowering in a Malaysian lowland rain forest

We examined fruiting behaviors of 24 dipterocarp species in a lowland rain forest of Peninsular Malaysia during two consecutive episodes of general flowering (GF). The first GF episode (GF2001) occurred from August 2001 to February 2002, and the second GF episode (GF2002) followed immediately, from March to September 2002. The magnitude of GF2002 was greater than that of GF2001 at the community level. Significant positive size dependence of fruiting behavior at the community level was found in both GF2001 and GF2002, but there was no significant association between the fruiting behaviors in GF2001 and GF2002 except for one species. These results imply that tree size was one of the explanatory factors for fruiting behavior of dipterocarp species, but there was no evidence that adjacent reproduction caused the absence of reproduction and decreased fecundity in the subsequent fruiting event. In contrast, strong spatial aggregation of fruiting trees was found in GF2001, suggesting that external factors may affect fruiting behavior of dipterocarps in a minor GF episode. Among the 12 study species, there were large variations in fruiting behavior, but growth type (e.g., fast-growing or slow-growing) did not simply explain the inter-specific pattern of fruiting behavior. Thus, tree size may account for fruiting behavior of dipterocarps during the consecutive GF episodes through species-specific differences in phonological responses to internal and external conditions.     

Headspace solid‐phase microextraction gas chromatography–mass spectrometry for the detection of volatile organic compounds released from Ganoderma boninense and oil palm wood

Basal stem rot disease caused by the white‐rot fungus Ganoderma boninense is a major threat to the oil palm industry, and hence, the ability to detect infections at an early stage of development is desired. In this study, a headspace solid‐phase microextraction (HS‐SPME) method coupled with gas chromatography–mass spectrometry (GC‐MS) was employed to analyse the volatile organic compounds (VOCs) released from G. boninense cultures and infected oil palm wood. We examined VOCs released from three types of samples: G. boninense mycelium, oil palm wood and oil palm wood colonized by G. boninense. This preliminary study led to the tentative identification of 57 VOCs, including alcohols, alkanes, volatile acids, ketones, aldehydes, esters, sesquiterpenes and polycyclic aromatic hydrocarbon groups. Aliphatic compounds with eight‐carbon atoms, such as 1‐octen‐3‐ol, 3‐octanone, 1‐octanol and (E)‐2‐octenal, were the most abundant constituents of the Ganoderma samples, whereas furfural and hexanal were the major compounds detected in the oil palm wood samples. Chemometric analyses using cluster heat maps and principal component analyses were used to discriminate between the VOC profiles. The results indicated that the novel method described here could be used to detect Ganoderma disease and, more generally, for chemoecological studies of plant–pathogen interactions.