Pigeonpea improvement: An amalgam of breeding and genomic research

In the past five decades, constant research has been directed towards yield improvement in pigeonpea resulting in the deployment of several commercially acceptable cultivars in India. Though, the genesis of hybrid technology, the biggest breakthrough, enigma of stagnant productivity still remains unsolved. To sort this productivity disparity, genomic research along with conventional breeding was successfully initiated at ICRISAT. It endowed ample genomic resource providing insight in the pigeonpea genome combating production constraints in a precise and speedy manner. The availability of the draft genome sequence with a large‐scale marker resource, oriented the research towards trait mapping for flowering time, determinacy, fertility restoration, yield attributing traits and photo‐insensitivity. Defined core and mini‐core collection, still eased the pigeonpea breeding being accessible for existing genetic diversity and developing stress resistance. Modern genomic tools like next‐generation sequencing, genome‐wide selection helping in the appraisal of selection efficiency is leading towards next‐generation breeding, an awaited milestone in pigeonpea genetic enhancement. This paper emphasizes the ongoing genetic improvement in pigeonpea with an amalgam of conventional breeding as well as genomic research.     

Environmental heterogeneity and biotic interactions as potential drivers of spatial patterning of shorebird nests

Context

Species distributions are driven by a wide variety of abiotic and biotic factors, including nest placement for breeding individuals. As such, the spatial distribution of nests within a landscape can reflect environmental heterogeneity, habitat preferences, or even interactions with predators and other species.

Objectives

We determined the extent to which environmental heterogeneity and predation risk accounted for the observed spatial distribution of nests.

Methods

We assessed the spatial distribution of 112 nests of a migratory shorebird, the Hudsonian Godwit (Limosa haemastica), at Beluga River, Alaska, from 2009 to 2012, and explicitly tested for the relative influence of habitat characteristics and predation risk on nest locations. We also evaluated the effect of nest location, distance to conspecific nests, and proximity to roads on nest fate using 64 nests that were monitored through completion.

Results

Hudsonian Godwit nests were clustered across the landscape despite a lack of significant spatial autocorrelation (i.e., patchiness) in vegetation characteristics at either the micro- or landscape scale. Nest fate also was not predicted by either the distance to the nearest conspecific neighbor or proximity to roads. Thus, neither habitat characteristics nor predation risk explained the clustering of godwit nests.

Conclusions

These results suggest that godwits may select nest locations based more on social cues than underlying heterogeneity in vegetation or predation risk. As such, intra- and inter-specific interactions should be considered when developing management plans for species of conservation concern.

     

Landscape dynamics of floral resources affect the supply of a biodiversity-dependent cultural ecosystem service

Context

Cultural ecosystem services, many of which depend on biodiversity, are recognized as important but seldom quantified biophysically across landscapes. Furthermore, many ecosystem service models are static, and the supply of cultural ecosystem services may be misrepresented if seasonal shifts in biotic communities are ignored.

Objectives

We modeled landscape dynamics of wildflower blooms in a temperate montane landscape to determine (1) how floral resources (wildflower species richness, abundance, timing, and presence of charismatic species) changed over the growing season, (2) how projected wildflower viewing hotspots varied over space and time, and (3) how spatial shifts in floral resources affected potential public access to wildflower viewing.

Methods

Data were collected at 63 sites across a rural-to-urban gradient in the Southern Appalachian Mountains (USA). Generalized linear models were used to identify factors affecting floral resources at two temporal scales. Floral resources were projected across the landscape and hotspots of wildflower viewing were quantified using overlay analysis.

Results

Floral resources were affected by topoedaphic conditions, climate, and surrounding building density and changed seasonally. Seasonal models revealed locational shifts in ecosystem service hotspots, which changed the proportion of hotspots accessible to the public and identified wildflower-viewing opportunities unnoticed by static models.

Conclusion

Relationships between landscape gradients, biodiversity, and ecosystem service supply varied seasonally, and our models identified cultural ecosystem service hotspots otherwise obscured by simple proxies. Landscape models of biodiversity-based cultural ecosystem services should include seasonal dynamics of biotic communities to avoid under- or over-emphasizing the importance of particular locations in ecosystem service assessments.

     

Determining resistance to <Emphasis Type="Italic">Fusarium verticillioides</Emphasis> and fumonisin accumulation in African maize inbred lines resistant to <Emphasis Type="Italic">Aspergillus flavus</Emphasis> and aflatoxins

Fusarium verticillioides and Aspergillus flavus cause Fusarium ear rot (FER) and Aspergillus ear rot (AER) of maize, respectively. Both pathogens are of concern to producers as they reduce grain yield and affect quality. F. verticillioides and A. flavus also contaminate maize grain with the mycotoxins fumonisins and aflatoxins, respectively, which has been associated with mycotoxicosis in humans and animals. The occurrence of common resistance mechanisms to FER and AER has been reported. Hence, ten Kenyan inbred lines resistant to AER and aflatoxin accumulation were evaluated for resistance to FER, F. verticillioides colonisation and fumonisin accumulation; and compared to nine South African lines resistant to FER and fumonisin accumulation. Field trials were conducted at three localities in South Africa and two localities in Kenya. FER severity was determined by visual assessment, while F. verticillioides colonisation and fumonisin content were quantified by real-time PCR and liquid chromatography tandem mass spectrometry, respectively. Significant genotype x environment interactions was determined at each location (P ≤ 0.05). Kenyan inbred CML495 was most resistant to FER and F. verticillioides colonisation, and accumulated the lowest concentration of fumonisins across localities. It was, however, not significantly more resistant than Kenyan lines CML264 and CKL05015, and the South African line RO549 W, which also exhibited low FER severity (≤5%), fungal target DNA (≤0.025 ng μL^?1) and fumonisin levels (≤2.5 mg kg^?1). Inbred lines resistant to AER and aflatoxin accumulation appear to be promising sources of resistance to F. verticillioides and fumonisin contamination.     

Coughing in thoroughbred racehorses: risk factors and tracheal endoscopic and cytological findings

A matched case-control study was made of 100 thoroughbred horses which were coughing and 148 control horses which were free of clinical signs of respiratory tract disease. The variables identified by multivariable conditional logistic regression as being significantly associated with coughing included age (the risk decreased with age), the stage of training (horses in early training were at greatest risk), the time since the last race (horses that had never raced were at greatest risk) and the time since they were last transported (horses transported more than 14 days previously were more likely to cough than those transported within the last week). The coughing horses were significantly more likely to have high scores for upper and lower tracheal mucus and pharyngeal lymphoid hyperplasia. In addition, the tracheal aspirates of the coughing horses had increased odds of neutrophilia and were more likely to have intracellular bacteria than the control horses. However, a considerable proportion of the control horses had cytological and/or endoscopic evidence of airway inflammation.     

Histopathological findings in the medial palmar and dorsomedial intercarpal ligaments of the equine midcarpal joint

Medial palmar intercarpal ligaments (MPICL) and dorsomedial intercarpal ligaments (DMICL) from the midcarpal joints of 11 adult horses in training were examined histopathologically. These were compared with ligaments from seven horses less than 12 months of age, and 10 grossly enlarged DMICLs of adult horses. Tearing of the MPICL was observed in 15 of 22 joints from adult horses. Collagen fibre bundles of the MPICLs generally were disorganized and poorly aligned, and there were large areas of loose connective tissue. In young horses there was more parallel alignment of collagen bundles and less loose connective tissue. Collagen bundles of adult DMICLs were well organized and showed parallel alignment, whereas in foals the structure appeared more like that of fibrous joint capsule. Grossly enlarged DMICLs in adults consistently had discrete areas of fibrovascular infiltration. Degeneration of the MPICL was associated with increasing age and could explain the high incidence of tearing of the ligament. Enlargement of the DMICL was associated with low-grade tearing and repair.     

Postoperative performance of racing horses with tearing of the medial palmar intercarpal ligament

OBJECTIVE: To examine the relationship between medial palmar intercarpal ligament (MPICL) tearing and postoperative performance in racing horses. MATERIALS AND METHODS: The postoperative performance of 42 horses in which the midcarpal joint was examined arthroscopically was followed prospectively. Intra-articular variables examined were the severity of MPICL tearing, subchondral bone damage and articular cartilage damage. Using a scoring system based on the class of race and the position in the race, a mean score was calculated for up to five races before and after surgery. The preoperative score was subtracted from the postoperative score to give a net score. Statistical analysis was by a Mann Whitney U test and multiple linear regression. RESULTS: Thirty-two (76%) raced postoperatively, 23 (55%) won at least one race and 12 of 26 (46%) performed at the same or higher level. Horses with grades 2 to 4 MPICL tearing had significantly lower net scores than those with grade 1 or no tearing. The severity of subchondral bone damage was the only variable on its own that was significantly correlated with net score (r2 = 0.23, P < 0.05). The addition of the grade of MPICL tearing to bone damage significantly improved the prediction of postoperative performance (P < 0.05). The inclusion of articular cartilage damage had no effect on the prediction of postoperative performance. CONCLUSION: Tears involving more than one third of the MPICL as observed arthroscopically have a significant detrimental affect on postoperative performance of racing horses.     

Bone marrow response to large volume blood collection in the horse

Evaluation of erythropoietic regeneration in horses is difficult unless serial bone marrow aspirates are performed. To investigate the acute and chronic erythropoietic regenerative response of equine bone marrow following acute removal or loss of blood, sequential bone marrow aspirates over 4 weeks were taken from the sternum of five horses from which 20 ml kg(-1)of blood had been removed. We found that the total number of erythroid cells counted (expressed as a percentage of the total number of erythroid and myeloid cells counted) expanded initially by 13.7 per cent within 3 days after blood removal, the erythroid response peaking by 9 days with a further 13.5 per cent increase. This peak coincided with the lowest M:E ratio. Concomitantly, a shift from proliferative phase cells to maturing phase cells occurred, which appeared to persist beyond 31 days post collection. Thus, we found that the equine bone marrow mounted a regenerative erythropoietic response more slowly than previously determined and, also, regeneration of the erythroid compartment was incomplete 31 days after blood removal of this magnitude.     

Plasma Adrenocorticotropin Concentration in Healthy Horses and in Horses With Clinical Signs of Hyperadrenocorticism

Pituitary adenomas are commonly reported in older horses. The typical clinical signs associated with this condition, also known as equine Cushing's disease (ECD), are related to increased adrenocorticotropin (ACTH) production resulting in hyperadrenocorticism. The primary purpose of this study was to determine whether plasma ACTH concentrations differed between cushingoid and healthy horses. The second objective was to determine the effects of blood sample handling techniques on ACTH concentrations. A commercial human ACTH radioimmunoassay (RIA) was used to quantify equine plasma ACTH. Intra-assay and interassay variations, as well as dilutional parallelism were determined during the RIA validation. Plasma ACTH concentrations were evaluated in a group of healthy equids composed of 18 horses and 9 ponies, and in 22 equids with a clinical diagnosis of hyper adrenocorticism (11 horses and 11 ponies). The mean plasma ACTH concentrations in healthy horses and ponies, (18.68 ± 6.79 pg/mL (mean ± SD) and 8.35 ± 2.92 pg/mL, respectively), were significantly different (P = .009). The mean plasma ACTH concentration in horses and ponies with ECD, (199.18 ± 182.82 pglmL and 206.21 ± 319.56 pg/mL, respectively), were significantly higher than the mean ACTH concentration in the control animals (P < .001). Plasma ACTH concentrations appeared to be a sensitive and specific indicator of ECD in horses and ponies. ACTH concentrations measured in plasma samples kept at room temperature (19°C) as long as 3 hours after blood collection were not statistically different from those of samples kept at 1°C. J Vet Intern Med 1996;10:1–6. Copyright 1996 by the American College of Veterinary Internal Medicine .     

THE USE OF ELECTROCARDIOGRAPHY IN THE DIAGNOSIS OF POOR RACING PERFORMANCE IN THE HORSE

Electrocardiograms were reocrded from 153 racehorses and 10 Olympic three-day-event horses. The horses were then grouped into those presented for routine examination, those in which there was a complaint of poor performance, those going to the Montreal Olympics, and those with upper respiratory tract abnormalities. When the ECGs of the four groups were compared on the basis of detection of abnormality, it was found that 93.2% of the poor performance group showed abnormalities of various types. The routine examination group showed 21.1% of horses with abnormal ECGs, and over half of these have been followed to the point where it can be said they raced unsuccessfully. In particular, this applied to those horses with T wave abnormalities in 4 or more leads, and to those with intraatrial block. There were significant T wave changes in 50% of the Olympic horses, and 43.7% of horses with laryngeal hemiplegia showed abnormality. While it can be concluded that T wave changes are highly significant findings in an ECG, it is also true that modification of the training programme is a way of helping trainers to get the best out of horses which might otherwise have a serious limitation of their performance potential.