Molecular detection and characterization of ovine herpesvirus-2 using heminested PCR in Pakistan

BackgroundMalignant catarrhal fever (MCF) is a highly fatal lymphoproliferative disease of cattle, deer, bison, water buffalo, and pigs caused by the gamma-herpesviruses alcelaphine herpesvirus-1 (AlHV-1) and ovine herpesvirus-2 (OvHV-2).ObjectivesThis study aimed to determine the prevalence of OvHV-2 in sheep, goats, cattle, and buffalo in Rawalpindi and Islamabad, Pakistan, by applying molecular and phylogenetic methods.MethodsBlood samples were aspirated from sheep (n = 54), goat (n = 50), cattle (n = 46) and buffalo (n= 50) at a slaughterhouse and several farms. The samples were subjected to heminested polymerase chain reaction (PCR), followed by sequencing and phylogenetic analysis of the OvHV-2 POL gene and the OvHV-2 ORF75 tegument protein gene.ResultsThe highest percentage of MCF positive samples was in sheep (13%), whereas goat, cattle, and buffalo had lower positive percentages, 11%, 9%, and 6.5%, respectively. Four OvHV-2-positive PCR products obtained from sheep samples were sequenced. The sequences obtained were submitted to the NCBI GenBank database ({"type":"entrez-nucleotide","attrs":{"text":"MK852173","term_id":"1694854431","term_text":"MK852173"}}MK852173 for the POL gene; {"type":"entrez-nucleotide","attrs":{"text":"MK840962","term_id":"1686143390","term_text":"MK840962"}}MK840962, {"type":"entrez-nucleotide","attrs":{"text":"MK852171","term_id":"1694854427","term_text":"MK852171"}}MK852171, and {"type":"entrez-nucleotide","attrs":{"text":"MK852172","term_id":"1694854429","term_text":"MK852172"}}MK852172 for the ORF75 tegument protein gene). Phylogenetic analysis revealed a close similarity of study sequences with those of worldwide samples.ConclusionsThis study is the first cross-sectional study on the prevalence and molecular detection of OvHV-2 in apparently healthy cattle and buffalo that could be carrying OvHV-2 acquired from OvHV-2-positive sheep and goats. The results indicate that OvHV-2 is circulating in Pakistan. Further studies are needed to characterize OvHV-2 and elucidate further its prevalence.     

大麦重组自交系群体籽粒总花色苷含量和千粒重QTL定位

以云南特有的紫色大麦紫光芒裸二棱和澳大利亚引进的黄色大麦Schooner构建的193个重组自交系为材料,对2013—2015年3年3个试验点的大麦籽粒总花色苷含量和千粒重进行相关性分析和QTL定位。大麦总花色苷含量和千粒重之间呈显著或极显著负相关。共检测到12个总花色苷含量QTL,分别位于1H、2H、4H、6H和7H染色体,贡献率为5.06%～23.86%; 8个千粒重QTL,分别位于2H、4H和7H染色体,贡献率为4.67%～42.32%。贡献率大于10%的QTL有10个,大于20%的有5个,最大的可达42.32%。其中至少2年2点重复检测到2个总花色苷含量QTL,分别位于2H Bmag0125–GBM1309和7H EBmatc0016–Bmag0206区间,可分别解释表型变异的13.66%～17.76%和13.07%～16.43%;3年3点重复检测到2个千粒重QTL,分别位于2HScssr03381–scssr07759和7H GBM1297-GBM1303区间,可分别解释表型变异的4.67%～14.55%和34.51%～42.32%,其加性作用方向均一致。控制总花色苷含量与千粒...     

Consequences of narrow crop row spacing and delayed Echinochloa colona and Trianthema portulacastrum emergence for weed growth and crop yield loss in maize

Echinochloa colona and Trianthema portulacastrum are weeds of maize that cause significant yield losses in the Indo‐Gangetic Plains. Field experiments were conducted in 2009 and 2010 to determine the influence of row spacing (15, 25 and 35 cm) and emergence time of E. colona and T. portulacastrum (0, 15, 25, 35, 45 and 55 days after maize emergence; DAME) on weed growth and productivity of maize. A season‐long weed‐free treatment and a weedy control were also used to estimate maize yield and weed seed production. Crop row spacing as well as weed emergence time had a significant influence on plant height, shoot biomass and seed production of both weed species and grain yield of maize in both years. Delay in emergence of weeds resulted in less plant height, shoot biomass and seed production. However, increase in productivity of maize was observed by delay in weed emergence. Likewise, growth of both weed species was less in narrow row spacing (15 cm) of maize, as compared with wider rows (25 and 35 cm). Maximum seed production of both weeds was observed in weedy control plots, where there was no competition with maize crop and weeds were in rows 35 cm apart. Nevertheless, maximum plant height, shoot biomass and seed production of both weed species were observed in 35 cm rows, when weeds emerged simultaneously with maize. Both weed species produced only 3–5 seeds per plant, when they were emerged at 55 DAME in crop rows spaced at 15 cm. Infestation of both weeds at every stage of crop led to significant crop yield loss in maize. Our results suggested that narrow row spacing and delay in weed emergence led to reduced weed growth and seed production and enhanced maize grain yield and therefore could be significant constituents of integrated weed management strategies in maize.     

Pig manure digestate-derived biochar for soil management and crop cultivation in heavy metals contaminated soil

Management of heavy metal-contaminated soil under drought and other harsh hydrological conditions is critical for protecting soil ecosystem services. In this study, we examined the effect of pig manure digestate-derived biochar as a soil amendment (15 t ha⁻¹) with N fertilizer (180 kg ha⁻¹) on soil and plant heavy metal levels and nutrient availability under various moisture regimes (optimal moisture ~15%, drought condition ≤5%, and flooded condition ≥35% wt.). It was observed that biochar applications significantly decreased heavy metals in the spring wheat plants, lowering Cr by 90%, Ni by 50%, Cd by 9% and Pb by 34% compared to non-biochar (control) treatments. However, the pig digestate-derived biochar increased heavy metals in soil under all moisture regimes, increasing soil Cr by 21%, Ni by 43%, Cu by 55%, Zn by 70%, and Pb by 12%. The availability of macroelements also increased with the biochar applications under the optimum moisture regimes in both soil and plants, increasing Mg²⁺ by 11%, P by 4%, K⁺ by 50%, and Ca²⁺ by 56% in the soil, and Mg²⁺ by 13%, P by 69%, K⁺ by 29, and Ca²⁺ by 39% in plants. Biochar addition also improved chlorophyll fluorescence (CF) levels in the crop for the entire season (12^th to 62^nd day) and the aboveground crop biomass and dry matter contents both increased. Consequently, the use of pig manure digestate-derived biochar with N fertilizer under normal moisture conditions was able to reduce heavy metal availability to plants and thus could be used in contaminated soils to maintain better crop growth and development.     

Supra‐optimal growth temperature exacerbates adverse effects of low Zn supply in wheat

Rising temperatures are a major threat to global wheat production, particularly when accompanied by other abiotic stressors such as mineral nutrient deficiencies. This study aimed to quantify the effects of supra‐optimal temperature on growth, photosynthetic performance, and antioxidative responses in bread wheat cultivars grown under varied zinc (Zn) supply. Two bread wheat cultivars (Triticum aestivum L., cvs. Lasani‐2008 and Faisalabad‐2008) with varied responsiveness to Zn supply and drought tolerance were cultured in nutrient solution with low (0.1 µM) or adequate (1.0 µM) Zn under optimal (25/20°C day/night) or supra‐optimal (36/28°C day/night) temperature regimes. Supra‐optimal temperature severely reduced root but not shoot biomass, whereas low Zn reduced shoot as well as root biomass. Shoot‐to‐root biomass ratio was reduced under low Zn but increased under supra‐optimal temperature. Supra‐optimal temperature inhibited root elongation and volume particularly in plants supplied with low Zn. In both cultivars, Zn efficiency index was reduced by supra‐optimal temperature, whereas heat tolerance index was reduced by low Zn supply. Supra‐optimal temperature decreased photosynthesis, quantum yield, and chlorophyll density in low‐Zn but not in adequate‐Zn plants. In comparison, low Zn decreased specific activities of superoxide dismutase (SOD) and ascorbate peroxidase (APX) and increased glutathione reductase (GR), where supra‐optimal temperature increased SOD, decreased GR and did not change APX activity in leaves and roots. Moreover, supra‐optimal temperature severely reduced shoot Zn concentration and Zn uptake per plant specifically under adequate Zn supply. Overall, supra‐optimal temperature exacerbated adverse effects of low Zn supply, resulting in severe reductions in growth traits viz. shoot and root biomass, root length and volume, and consequently impeded Zn uptake, enhanced oxidative stress and impaired photosynthetic performance. Adequate Zn nutrition is crucial to prevent yield loss in wheat cultivated under supra‐optimal temperatures.     

Morphological,physiological and biochemical aspects of osmopriming-induced drought tolerance in lentil

Lentil (Lens culinaris Medik.) is an important grain legume crop, mostly grown in semi-arid environments and often faces intermittent drought spells during different growth stages, which severely hamper its yield. This study, comprising of three separate experiments, was conducted to evaluate the potential of seed priming with CaCl₂ in improving drought tolerance in lentil. In the first experiment, lentil seeds were hydroprimed (water) or osmoprimed with 0.5 and 1% CaCl₂; while non-primed seeds were taken as control. In the second and third experiments, lentil seeds were subjected to pre-optimized osmopriming (1% CaCl₂) and hydropriming followed by surface drying or re-drying of primed seeds to original weight. The first two experiments were conducted in petri plates, while, in experiment 3, seeds were planted in plastic pots containing peat moss, maintained at 75% water holding capacity (WHC; well-watered) or 50% WHC (water deficit). Hydropriming and osmopriming improved seed germination, seedling growth, biomass production, chlorophyll intensity, sugar accumulation and reduced the oxidative stress in lentil under water deficit. However, osmopriming (1% CaCl₂) was more effective than the hydropriming in improving the lentil growth, biomass production, Ca accumulation and sugar metabolism under both well-watered and water deficit conditions. Seed surface drying, after priming, was more beneficial in improving the lentil performance, under both well-watered and water deficit conditions, than re-drying to original weight. Osmopriming (1% CaCl₂) increased the seeding dry weight (67%), SPAD value (140%), leaf Ca concentration (56%), α-amylase activity (55%), total soluble sugars (48%) and reduced malanodialdehyde content (35.9%) and total antioxidant activity (29.2%) than un-primed seeds under water deficit. In conclusion, osmopriming improved the lentil performance under optimal and water deficit conditions through early and synchronized emergence, better sugar and Ca accumulation which reduced the oxidative damage and resulted in better seedling growth and biomass production.     

Oxidative damage in forage rape (Brassica napus L.) seeds following heat stress during seed development

A short period (240°C hr; Tb = 25°C) of heat stress (30°C day/25°C night) during forage rape (Brassica napus L.) seed development or at seed physiological maturity can reduce seed vigour, but the extent of oxidative damage associated with this short heat stress was not known. Heat-stressed seeds were assessed for malondialdehyde (MDA) content, hydrogen peroxide (H₂O₂) accumulation, antioxidant enzyme activity, adenylate energy charge and seed ultrastructural integrity, and compared with that of non-heat-stressed seeds. Heat stress increased both MDA content and H₂O₂ accumulation by 35%–50%, reduced antioxidant enzyme activity by between 12% and 67%, and significantly reduced adenosine energy charge. Transmission electron microscope images showed clear evidence of seed deterioration in heat-stressed seeds, including ruptures in cell wall and plasma membranes, fused lipid bodies and damaged mitochondria. Heat stress at physiological maturity caused more oxidative damage than the same heat stress during seed development. Seed vigour decreased as H₂O₂ accumulation increased and antioxidant enzyme activity decreased, but no direct relationship between lipid peroxidation and seed vigour was established. The extent of damage resulting from even shorter periods of heat stress (<240°C hr) before or at seed physiological maturity requires investigation.     

Two-year study on combining ability and heterotic potential in functional traits under salt stress in upland cotton (Gossypium hirsutum)

Salt tolerance is a physiologically and genetically complex trait controlled by multiple genes. To analyze the genetic basis of salt tolerance we evaluated 18 F₁ along with their nine parents under three salt stress levels i.e. control, 10 dS m⁻¹ and 15 dS m⁻¹ in the summer of 2017 and 2018. Data were recorded for the number of bolls, seed cotton yield, boll weight, Na⁺, K⁺, K⁺/Na⁺ ratio, H₂O₂, SOD, POD, CAT and TSP. Line × tester analysis indicated that the contribution of lines was greater than testers. Except for Na⁺, most of the traits were controlled by non-additive genes. With the rise of salt stress, SCA variances increased and were higher than GCA variances for most of the traits indicating the traits were controlled by a few largely dominant genes. KEHKSHAN, FH-118 and FH-114 were found good general combiner whereas the cross KEHKSHAN × FH-114 was a good specific combiner and also indicated significant better parent heterosis for most traits during two years under salt stress and can be utilized in a breeding programme for salt tolerance.     

Silicon: a beneficial nutrient for maize crop to enhance photochemical efficiency of photosystem II under salt stress

Soil salinity imposes an unprecedented risk to the soil fertility and availability of plant nutrients. The present proposal is designed to address the effect of salt stress on photosynthetic apparatus of maize including chlorophyll a fluorescence and how silicon nutrition helps to overcome this issue. In a sand culture experiment, two maize cultivars were sown in small pots with two levels of silicon (0 and 2 mM H₂SiO₃) and two levels of salinity stress (0 and 60 mM NaCl). Salinity stress reduced dry matter yield and potassium (K) concentration in both maize cultivars and also induced inefficient working of photosynthetic apparatus including photochemical efficiency of photosystem II. Silicon addition alleviated NaCl stress on maize crop by improving the dry matter yield and water use efficiency (WUE). It decreased shoot Na concentration by increasing root and shoot K concentration of maize plants. It enhanced maximum quantum yield of primary photochemistry which leads to smooth electron transport chain. It also significantly enhanced shoot silicon concentration and has a significant positive correlation with WUE. Therefore, silicon-treated maize plants have better chance to survive under salt stress conditions as their photosynthetic apparatus is working far better than non-silicon-treated plants.     

Variations of precipitation characteristics during the period 1960–2014 in the Source Region of the Yellow River,China

Precipitation, a natural feature of weather systems in the Earth, is vitally important for the environment of any region. Under global climate change condition, the characteristics of precipitation have changed as a consequence of enhanced global hydrological cycle. The source region of the Yellow River(SRYR), locating within the Qinghai-Tibet Plateau, is sensitive to the global climate change due to its complex orography and fragile ecosystem. To understand the precipitation characteristics and its impacts on the environment in the region, we studied the characteristics of rainy days and precipitation amount of different precipitation classes, such as light(0–5 and 5–10 mm), moderate(10–15, 15–20 and 20–25 mm) and heavy(≥25 mm) rains by analyzing the precipitation data of typical meteorological stations in the SRYR during the period 1961–2014, as well as the trends of persistent rainfall events and drought events. Results showed that annual average precipitation in this area had a non-significant(P>0.05) increasing trend, and 82.5% of the precipitation occurred from May to September. Rainy days of the 0–5 mm precipitation class significantly decreased, whereas the rainy days of 5–10, 10–15, and 20–25 mm precipitation classes increased and that of ≥25 mm precipitation class decreased insignificantly. The persistent rainfall events of 1-or 2-day and more than 2-day showed an increasing trend, with the 1-or 2-day events being more frequent. Meanwhile, the number of short drought periods(≤10 days) increased while long drought periods(>10 days) decreased. Since the 0–5 mm precipitation class had a huge impact on the grasslands productivity; the 5–10, 10–15, and 20–25 mm precipitation classes had positive effects on vegetation which rely on the deep soil water through moving nutrients and water into the root zone of these vegetation or through the plant-microbe interactions; the ≥25 mm precipitation class contributed to the floods; and more persistent rainfall events and fewer long drought events inferred positive effects on agriculture. Thus, these results indicate grassland degradation, less risk of floods, and the upgrading impact of climate change on agriculture. This study may provide scientific knowledge for policymakers to sustain the eco-environmental resources in the SYSR.