A fine-scale chimpanzee genetic map from population sequencing

To study the evolution of recombination rates in apes, we developed methodology to construct a fine-scale genetic map from high-throughput sequence data from 10 Western chimpanzees, Pan troglodytes verus. Compared to the human genetic map, broad-scale recombination rates tend to be conserved, but with exceptions, particularly in regions of chromosomal rearrangements and around the site of ancestral fusion in human chromosome 2. At fine scales, chimpanzee recombination is dominated by hotspots, which show no overlap with those of humans even though rates are similarly elevated around CpG islands and decreased within genes. The hotspot-specifying protein PRDM9 shows extensive variation among Western chimpanzees, and there is little evidence that any sequence motifs are enriched in hotspots. The contrasting locations of hotspots provide a natural experiment, which demonstrates the impact of recombination on base composition.     

In vitro and in vivo acaricidal activity of a herbal extract

The anti-tick efficacy of combined aqueous herbal extracts of Azadirachta indica leaves, Nicotiana tabacum leaves, Calotropis procera flowers and Trachyspermum ammi seeds was evaluated using adult immersion test, larval packet test and ear bag method. The extract exhibited lethal effects on egg laying (index of egg laying=0.371404±0.00435), hatching (22.35%) and total larval mortality at 50 mg ml(-1) and reduced tick intensity on the infested calves (18 detached out of 35 at 45% (w/w) suspension, topically applied). The herbal extract exerted dose- and time-dependent response against all the developmental stages of Rhipicephalus (Boophilus) microplus considered in this study, thus justified their use in the traditional system of Pakistan.     

Oncolytic gene therapy for canine cancers: teaching old dog viruses new tricks

The use of viruses to treat cancer has been studied for decades. With the advancement of molecular biology, viruses have been modified and genetically engineered to optimize their ability to target cancer cells. Canine viruses, such as distemper virus and adenovirus, are being exploited for the treatment of canine cancer as the dog has proven to be a good comparative model for human cancer research and proof of concept investigations. In this review, we introduce the concept of oncolytic viruses and describe some of the preliminary attempts to use oncolytic viruses for the treatment of canine cancer.     

Spatial and temporal changes in chlorophyll fluorescence images of Nicotiana benthamiana leaves following inoculation with Pseudomonas syringae pv. tabaci

Inoculation of Nicotiana benthamiana leaves with virulent and avirulent strains of Pseudomonas syringae pv. tabaci resulted in increasing changes in F_v/F_m, and NPQ over time. Images of these chlorophyll a fluorescence measurements revealed different changes in different zones of the leaf. For the virulent strain, the infiltrated zone and zone directly surrounding it showed decreased F_v/F_m, and NPQ before the appearance of visible symptoms, and these decreases corresponded with increasing bacterial populations and putative tabtoxin activity. Another distinct zone of reduced F_v/F_m and NPQ extended several centimetres from the lesion to the nearest leaf margin, but only very low bacterial populations and no putative tabtoxin activity were detected in this zone. For the avirulent strain, a hypersensitive response occurred, bacterial populations remained low, and there was little detectable putative tabtoxin activity. Decreased F_v/F_m and NPQ, but not , were observed in the infiltrated zone prior to the hypersensitive response, followed by decreased values in a zone directly surrounding it. Following that, no further changes were observed. These results demonstrate that in addition to detecting pre‐symptomatic impacts of bacteria, chlorophyll a fluorescence imaging can also show that there are highly distinct regions of affected tissue that can extend considerably beyond the area of bacterial colonization. This should be considered in selecting leaf tissues for examining the effects of pathogens on plants, such as altered host gene expression or protein levels.     

Evaluation of oil formulations of deltamethrin for use on cotton targets for tsetse fly control

A range of formulations of deltamethrin were prepared, some containing an ultraviolet (UV) absorber compound or a combination of the UV absorber and an oil, and applied to blue cotton tsetse fly target samples which were then exposed to the effect of simulated sunlight and water in the laboratory. The residue of insecticide remaining on the targets and the activity of the latter against tsetse flies was determined. Formulations containing the UV absorber and coconut oil or silicone oil remained the most effective against tsetse flies. A coconut oil formulation of the insecticide was selected for field evaluation in comparison with a commercial deltamethrin formulation, Glossinex 200′ S.C., which contains 10% UV absorber. Target samples treated with these formulations were exposed to natural tsetse fly habitat in Ghana for a period of five months and evaluated for deltamethrin residues and activity against four species of tsetse fly. After five months, 4–13 times more deltamethrin remained on the targets treated with the coconut oil formulation than on those treated with ‘Glossinex’, and consequently the former were more active against tsetse flies than the latter. Target samples sequentially dipped in the coconut oil formulation resulted in uniform insecticide concentration on the targets, whereas those dipped in ‘Glossinex’ contained gradually decreasing deltamethrin concentrations.     

Telomerase: a potential diagnostic and therapeutic tool in canine oncology

In recent years there has been considerable interest in telomerase as a target for therapeutic intervention in oncology. This largely stems from the vast number of studies that have demonstrated expression and activity of the enzyme telomerase in the majority of human cancer tissues with little or no activity detectable in normal somatic tissues. These studies have led to an interest in the role of telomerase in cancers associated with domesticated species, in particular tumors that affect dogs. This article reviews the biology of telomerase and the biological significance of telomerase activity in canine tumors and discusses the clinical implications of telomerase expression in canine cancers with regard to therapeutics and diagnostics.     

Development of a pooled probe method for locating small gene families in a physical map of soybean using stress related paralogues and a BAC minimum tile path

Background  

Genome analysis of soybean (Glycine max L.) has been complicated by its paleo-autopolyploid nature and conserved homeologous regions. Landmarks of expressed sequence tags (ESTs) located within a minimum tile path (MTP) of contiguous (contig) bacterial artificial chromosome (BAC) clones or radiation hybrid set can identify stress and defense related gene rich regions in the genome. A physical map of about 2,800 contigs and MTPs of 8,064 BAC clones encompass the soybean genome. That genome is being sequenced by whole genome shotgun methods so that reliable estimates of gene family size and gene locations will provide a useful tool for finishing. The aims here were to develop methods to anchor plant defense- and stress-related gene paralogues on the MTP derived from the soybean physical map, to identify gene rich regions and to correlate those with QTL for disease resistance.     

Bovine papillomaviruses: their role in the aetiology of cutaneous tumours of bovids and equids

Bovine papillomavirus (BPV) is perhaps the most extensively studied animal papillomavirus. In cattle BPVs induce benign tumours of cutaneous or mucosal epithelia, called papillomas or warts. Cattle papillomas are benign tumours and generally regress without eliciting any serious clinical problems in the host, but occasionally persist and provide the focus for malignant transformation to squamous cell carcinoma, as in the case of cancer of the urinary bladder and cancer of the upper alimentary canal. BPV is the only papillomavirus that jumps species: the virus also infects equids, and gives rise to fibroblastic tumours called sarcoids. Sarcoids very rarely regress, more often they persist and can be locally aggressive. These tumours are the most common dermatological tumour of equids worldwide. The purpose of this review is to discuss the biology of BPV, the biology of bovine tumours and equine sarcoids, and present the current understanding of BPV in tumour pathogenesis in its natural host, cattle, and in its heterologous host, equids. Finally, the use of anti-BPV vaccines as a therapy for equine sarcoids will be discussed. Only limited information on the clinical or pathological aspects of either bovine or equine tumours will be provided as this subject has been extensively addressed previously.     

Assessing yield optimization and water reduction potential for summer-sown and spring-sown maize in Pakistan

Agricultural food production in arid and semi-arid regions faces the challenge to ensure high yields with limited supply of water. This raises the question to which extent irrigation supply can be reduced without detriment to yield. Our study focuses on the yield-water uptake relationship for maize in the moderate water stress range in order to determine the onset of stress-induced dry-matter and yield losses. Compensatory plant responses under moderate stress levels are discussed in relation to seasonal climatic conditions.Summer-sown and spring-sown maize were irrigated with a decreasing amount of water in a field experiment in Pakistan. Water supply ranged from 100% water required to maintain soil at field capacity (FC) to 40% of FC. The average dry-matter and yield levels were slightly higher for summer-sown (15.0 Mg ha⁻¹) compared to spring-sown maize (13.1 Mg ha⁻¹). The onset of significant dry-matter and yield reduction started at the least irrigation treatment in both seasons. The amount of water required to avoid production losses was 272 mm in the summer-sown maize during the autumn growing season, and 407 mm for the spring-sown maize in the summer season, when the evaporative demand of the atmosphere was +27% higher. Water use efficiency (WUE_ET), normalized by vapour pressure deficit, of the summer-sown maize which was 10.0 kg kPa m⁻³, was +15% higher compared to the spring-sown crop; while the irrigation water productivity (2.9 kg m⁻³) was +11% more. WUE_ET increased over the whole range of applied water deficits for summer-sown maize, while the spring-sown crop showed a decreasing WUE_ET in the less irrigated treatment. Due to the higher efficiency in summer-sown maize, the potential in irrigation reduction without production losses (129 mm) was higher compared to the spring-sown maize (57 mm). Our results showed that in Pakistan water saving irrigation practices can be applied without yield loss mainly during the cooler growing season when the crop can efficiently compensate a lower total water uptake by increased use efficiency. For spring-sown maize the increasing evaporative demand of the atmosphere towards summer implies a higher risk of yield losses and narrows the range to exploit higher irrigation water productivity under moderate water deficit conditions.