黄瓜全雌性基因连锁的AFLP和SCAR分子标记

 本研究以全雌品种‘戴多星’自交系和弱雌品种‘北京截头’自交系为双亲杂交获得F₁ ,然后得到F₂ 性型分离群体, 利用分离群体分组分析法(Bulked Segregant Analysis, BSA) 构建全雌和弱雌两个基因池, 筛选了64对AFLP选择性引物EcoR I-NN +Mse I-NNN组合, 发现EcoR I-TG +Mse I-CAC引物组合在全雌基因池中扩增出一条分子量为234 bp的特异带。经F₂ 代单株验证, 该特异条带能在全雌单株中稳定出现。以MAP MAKER (Version 310) 软件分析, 该标记与全雌性位点的连锁距离在617 cM。命名该连锁标记为TG/CAC₂₃₄。将该特异条带回收、克隆、测序, 设计特异SCAR引物, 再对F₂ 代单株基因组DNA进行扩增, 仅在全雌单株中扩增出1条分子量为166 bp 的特异带, 表明已成功地将与黄瓜全雌性连锁的AFLP标记转化为操作简便、表现稳定的SCAR标记, 该标记命名为SA₁₆₆。     

Preschool programs and later school competence of children from low-income families

At follow-up in 1976, low-income children who had attended infant and preschool programs in the 1960's had significantly higher rates of meeting school requirements than did controls, as measured by lower frequency of placement in special education classes and of being retained in grade (held back).     

Germline mutations in genes within the MAPK pathway cause cardio-facio-cutaneous syndrome

Cardio-facio-cutaneous (CFC) syndrome is a sporadic developmental disorder involving characteristic craniofacial features, cardiac defects, ectodermal abnormalities, and developmental delay. We demonstrate that heterogeneous de novo missense mutations in three genes within the mitogen-activated protein kinase (MAPK) pathway cause CFC syndrome. The majority of cases (18 out of 23) are caused by mutations in BRAF, a gene frequently mutated in cancer. Of the 11 mutations identified, two result in amino acid substitutions that occur in tumors, but most are unique and suggest previously unknown mechanisms of B-Raf activation. Furthermore, three of five individuals without BRAF mutations had missense mutations in either MEK1 or MEK2, downstream effectors of B-Raf. Our findings highlight the involvement of the MAPK pathway in human development and will provide a molecular diagnosis of CFC syndrome.     

Effect of farm management on topsoil organic carbon and aggregate stability in water: A case study from Southwest England,UK

There are few reliable data sets to inspire confidence in policymakers that soil organic carbon (SOC) can be measured on farms. We worked with farmers in the Tamar Valley region of southwest England to select sampling sites under similar conditions (soil type, aspect and slope) and management types. Topsoils (2–15 cm) were sampled in autumn 2015, and percentage soil organic matter (%SOM) was determined by loss on ignition and used to calculate %SOC. We also used the stability of macroaggregates in cold water (WSA) (‘soil slaking’) as a measure of ‘soil health’ and investigated its relationship with SOC in the clay‐rich soils. %SOM was significantly different between management types in the order woodland (11.1%) = permanent pasture (9.5%) > ley‐arable rotation (7.7%) = arable (7.3%). This related directly to SOC stocks that were larger in fields under permanent pasture and woodland compared with those under arable or ley‐arable rotation whether corrected for clay content (F = 8.500, p < .0001) or not (F = 8.516, p < .0001). WSA scores were strongly correlated with SOC content whether corrected for clay content (SOC_adj R² = .571, p < .0001) or not (SOC_unadj R² = 0.490, p = .002). Time since tillage controlled SOC stocks and WSA scores, accounting for 75.5% and 51.3% of the total variation, respectively. We conclude that (1) SOC can be reliably measured in farmed soils using accepted protocols and related to land management and (2) WSA scores can be rapidly measured in clay soils and related to SOC stocks and soil management.     

The Impact of Hardwood Line-Planting on Tree and Amphibian Diversity in a Secondary Subtropical Wet Forest of Southeast Puerto Rico

The impact on tree and amphibian diversity of line-planting of tropical hardwoods—mahogany (Swietenia macrophylla × S. mahagoni) and mahoe (Hibiscus elatus)—was studied in a secondary subtropical wet forest of Puerto Rico. Common coqui (Eleutherodactylus coqui) and melodious coqui (E. wightmanae) are the most frequent frog species; forest coqui (E. portoricensis) is less abundant. Although relative abundance means were slightly greater in the undisturbed forest and during the wet season, differences were not statistically significant suggesting that line-planting did not significantly affect amphibian diversity. The line-planted areas had a slightly higher, but not statistically significant diversity, richness, and evenness of tree species than the unplanted forest. Multi-response permutation procedure (MRPP) showed statistically significant community composition differences between line-planting and control plot trees (T = ?5.89, A = .86; p < .001). But mean similarity among plots in both the line-planted and control plots was relatively low at less than 50% of shared species, indicating high diversity of vegetation in the overall forest area. Canopy cover by tree species greater than 3 cm in dbh was much higher in the undisturbed forest but this difference may be reduced as the young line-planted hardwoods mature. Forest enrichment through line-planting of valuable timber species in secondary subtropical wet forest does not significantly affect tree diversity.     

Short- and long-term implications of clearcut and two-age silviculture for conservation of breeding forest birds in the central Appalachians, USA

Two-age (deferment or leave tree) harvesting is used increasingly in even-aged forest management, but long-term responses of breeding avifauna to retention of residual canopy trees have not been investigated. Breeding bird surveys completed in 1994-1996 in two-age and clearcut harvests in the central Appalachian Mountains of West Virginia, USA allowed us to document long-term changes in these stands. In 2005 and 2006, we conducted point counts in mature unharvested forest stands and in 19-26 year-old clearcut and two-age harvests from the original study and in younger clearcut and two-age stands (6-10 years old). We found differences in breeding bird metrics among these five treatments and temporal differences in the original stands. Although early-successional species are typically absent from group selection cuts, they were almost as common in young two-age stands as clearcuts, supporting two-age harvests as an alternative to clearcutting. Although older harvests had lower species richness and diversity, they were beginning to provide habitat for some species of late-successional forest songbirds that were absent or uncommon in young harvests. Overall, late-successional forest-interior species were more flexible in their use of different seral stages; several species used both age classes and harvest types in addition to mature forest, which may reflect the lack of edges in our heavily-forested landscape. Consequently, two-age management provides habitat for a diverse group of species as these stands mature and may be an ecologically sustainable alternative to clearcutting in landscapes where brown-headed cowbirds (Molothrus ater) are uncommon.     

Humic products in agriculture: potential benefits and research challenges—a review

Journal of Soils and Sediments - Humic products have been used in cropland agriculture for several decades, but lack of widespread credibility has restricted their use to small proportions of...     

Dual origin of tissue-specific progenitor cells in Drosophila tracheal remodeling

During Drosophila metamorphosis, most larval cells die. Pupal and adult tissues form from imaginal cells, tissue-specific progenitors allocated in embryogenesis that remain quiescent during embryonic and larval life. Clonal analysis and fate mapping of single, identified cells show that tracheal system remodeling at metamorphosis involves a classical imaginal cell population and a population of differentiated, functional larval tracheal cells that reenter the cell cycle and regain developmental potency. In late larvae, both populations are activated and proliferate, spread over and replace old branches, and diversify into various stalk and coiled tracheolar cells under control of fibroblast growth factor signaling. Thus, Drosophila pupal/adult tissue progenitors can arise both by early allocation of multipotent cells and late return of differentiated cells to a multipotent state, even within a single tissue.     

Allelic relationships at the pvr1 locus in Capsicum annuum

Diseases caused by members of the Potyviridae family currently threaten pepper crops (Capsicum annuum L.) worldwide. A series of monogenic recessive resistance genes that control potyvirus resistance at the pvr1 locus in Capsicum species are widely known and used in pepper breeding programs, each allele with a differential resistance spectrum affecting a distinct range of viral strains across three viruses, Tobacco etch virus (TEV), Pepper mottle virus and Potato virus Y. In this study, we systematically analyzed the resistant spectra, and the level of the resistance each allele confers using a set of pepper genotypes homozygous or heterozygous for the following alleles; Pvr1 ⁺, pvr1, pvr1 ¹ and pvr1 ². The resistance alleles at the pvr1 locus show recessive inheritance when combined with a susceptible allele in F1 progenies. However, our results show that resistance in this system is, in fact, not always fully recessive and establish a hierarchy of allelic interactions We identified the resistance phenotype in F₁ progenies generated by combining a complete resistant allele with an incomplete resistance allele against TEV strains implying that the resistance alleles at the pvr1 shows dominant inheritance when combined with an incomplete resistance allele. Resistance alleles against TEV-HAT, pvr1 and pvr1 ², show dominance inheritance when each is combined with pvr1 ¹. The resistance allele, pvr1, shows dominance inheritance when combined with pvr1 ² against TEV-N. These results clarify the allelic relationship between resistance alleles at the pvr1 locus displaying different resistance spectra, and will assist breeders to select the preferred combinations of the resistance alleles to obtain durable resistance against multiple potyviral strains.