Accurate machine learning-based germination detection,prediction and quality assessment of three grain crops

Photosynthesis is one of the most important biological reactions and forms the basis of crop productivity and yield on which a growing global population relies. However, to develop improved plant cultivars that are capable of increased productivity, methods that can accurately and quickly quantify photosynthetic efficiency in large numbers of genotypes under field conditions are needed. Chlorophyll fluorescence imaging is a rapid, non-destructive measurement that can provide insight into the efficiency of the light-dependent reactions of photosynthesis. To test and validate a field-deployed fluorescence imaging system on the TERRA-REF field scanalyzer, leaves of potted sorghum plants were treated with a photosystem II inhibitor, DCMU, to reduce photochemical efficiency (FV/FM). The ability of the fluorescence imaging system to detect changes in fluorescence was determined by comparing the image-derived values with a handheld fluorometer. This study demonstrated that the imaging system was able to accurately measure photochemical efficiency (FV/FM) and was highly correlated (r = 0.92) with the handheld fluorometer values. Additionally, the fluorescence imaging system was able to track the decrease in photochemical efficiency due to treatment of DCMU over a 7 day period. The system’s ability to capture the temporal dynamics of the plants’ response to this induced stress, which has comparable dynamics to abiotic and biotic stressors found in field environments, indicates the system is operating correctly. With the validation of the fluorescence imaging system, physiological and genetic studies can be undertaken that leverage the fluorescence imaging capabilities and throughput of the field scanalyzer.     

Increased risk of select glucocorticoid adverse events in dogs of higher body weight

There are limited data on glucocorticoid treatment in dogs. The purpose of this study was to investigate whether dogs of higher body weight experienced more adverse events when receiving glucocorticoid therapy. Data pertaining to glucocorticoid therapy was abstracted from the records of 61 dogs that were prescribed glucocorticoids for treatment of immune-mediated thrombocytopenia or hemolytic anemia from 2014 to 2019. The odds of developing muscle atrophy and polyphagia during therapy were increased by 30% for each 5 kg of additional body weight. Almost half of the dogs (44.3%) fluctuated > 15% from baseline weight during therapy. Dogs whose body condition scored as above ideal were at increased risk (odds ratio = 4.2) for being diagnosed with urinary tract infection. Our findings suggest that standard linear glucocorticoid dosing may place higher body weight dogs at increased risk of developing adverse events. Accelerated glucocorticoid tapering and/or alternative dosing schemes in dogs with higher body weights may be prudent in efforts to improve tolerance and client compliance.     

The pelagic habitat analysis module for ecosystem‐based fisheries science and management

We have developed a set of tools that operate within an aquatic geographic information system to improve the accessibility, and usability of remote‐sensed satellite and computer‐modeled oceanographic data for marine science and ecosystem‐based management. The tools form the Pelagic Habitat Analysis Module (PHAM), which can be applied as a modeling platform, an investigative aid in scientific research, or utilized as a decision support system for marine ecological management. Applications include fisheries, marine biology, physical and biological oceanography, and marine spatial management. The GIS provides a home for diverse data types and automated tools for downloading remote sensed and global circulation model data. Within the GIS environment, PHAM provides a framework for seamless interactive four‐dimensional visualization, for matching between disparate data types, for flexible statistic or mechanistic model development, and for dynamic application of user developed models for habitat, density, and probability predictions. Here we describe PHAM in the context of ecosystem‐based fisheries management, and present results from case study projects which guided development. In the first, an analysis of the purse seine fishery for tropical tuna in the eastern Pacific Ocean revealed oceanographic drivers of the catch distribution and the influence of climate‐driven circulation patterns on the location of fishing grounds. To support management of the Common Thresher Shark (Alopias vulpinus) in the California Current Ecosystem, a simple empirical habitat utilization model was developed and used to dynamically predict the seasonal range expansion of common thresher shark based on oceanographic conditions.     

The influence of dietary fatty acid and fasting on the hepatic lipid metabolism of barramundi (Lates calcarifer)

For many fish species, dietary fish oil (FO) has been substituted with other oils such as poultry oil (PO) without affecting growth performance. However, in barramundi, the mechanisms by which fatty acid metabolism is regulated are poorly understood, and the effects of FO substitution are unknown. This study defined changes in the expression of genes controlling the metabolism of fatty acids in barramundi over a 24‐h time period after a single meal. From one to 12 h after a single feeding event, the expression of fatty acid synthesis genes in the liver was upregulated, while genes involved in the β‐oxidation showed minimal alteration. However, the expression of β‐oxidation genes was significantly correlated with the expression of genes regulating fatty acid synthesis. In a second experiment, the changes in liver fatty acid composition and gene expression were defined after FO was substituted with PO. Liver fatty acid profile reflected the diet composition, with some subtle exceptions supporting the enrichment of certain long‐chain polyunsaturated fatty acids in the liver. The fish from all experimental groups preferentially retained more docosahexaenoic acid than eicosapentaenoic acid in the liver, suggesting a bioconversion of this fatty acid to intermediate fatty acids. Replacement of FO with PO significantly regulated genes controlling both fatty acid synthesis and catabolism pathways, potentially related to a higher percentage of monounsaturated fatty acids, in the livers of fish fed these diets. The results demonstrated that diet composition significantly altered the lipid metabolism in barramundi and that there was a balance between direct dietary effects and endogenous synthetic capacity.     

“Indirect selection” for genetic change: A quantitative analysis illustrated with Macrobrachium rosenbergii

“Indirect selection” is exerted on a trait indirectly, by means other than artificial selection for the trait itself. Expressions are derived for calculating the intensity of indirect selection in aquaculture environments. The calculations are illustrated with growth-rate data on M. rosenbergii from farm ponds in Thailand, and with computer-generated data which simulate measurements made during a multiple mark-recapture experiment. Indirect selection for growth is probably negligible in Thai prawn farms and hatcheries at present, but small changes in management practice could exert strong indirect selection on growth rate. One very effective change appears to be collecting broodstock as early in the production cycle as possible. Control of indirect selection may be useful for the genetic improvement of aquaculture stock, especially in developing countries and other situations where an intensive artificial selection program is not economically or biologically desirable. Like all selection programs, the probability of success is critically dependent on the genetics of the traits being selected.     

Spatio‐temporal trends of sailfish,Istiophorus platypterus catch rates in relation to spawning ground and environmental factors in the equatorial and southwestern Atlantic Ocean

Spatial and temporal trends of sailfish catch rates in the southwestern and equatorial Atlantic Ocean in relation to environmental variables were investigated using generalized additive models and fishery‐dependent data. Two generalized additive models were fit: (i) ‘spatio‐temporal’, including only latitude, longitude, month, and year; and (ii) ‘oceanographic’, including sea surface temperature (SST), chlorophyll‐a concentration, wind velocity, bottom depth, and depth of mixed layer and year. The spatio‐temporal model explained more (average ~40%) of the variability in catch rates than the oceanographic model (average ~30%). Modeled catch rate predictions showed that sailfish tend to aggregate off the southeast coast of Brazil during the peak of the spawning season (November to February). Sailfish also seem to aggregate for feeding in two different areas, one located in the mid‐west Atlantic to the south of ~15°S and another area off the north coast of Brazil. The oceanographic model revealed that wind velocity and chlorophyll‐a concentration were the most important variables describing catch rate variability. The results presented herein may help to understand sailfish movements in the Atlantic Ocean and the relationship of these movements with environmental effects.     

Characterizing environmental and spatial variables associated with the incidental catch of olive ridley (Lepidochelys olivacea) in the Eastern Tropical Pacific purse‐seine fishery

In the Eastern Tropical Pacific (ETP), a region of high fishing activity, olive ridley (Lepidochelis olivacea) and other sea turtles are accidentally caught in fishing nets with tuna and other animals. To date, the interaction between fishing activity, ocean conditions and sea turtle incidental catch in the ETP has been described and quantified, but the factors leading to the interaction of olive ridleys and fishing activity are not well understood. This information is essential for the development of future management strategies that avoid bycatch and incidental captures of sea turtles. We used Generalized additive models (GAM) to analyze the relationship between olive ridley incidental catch per unit effort (iCPUE) in the ETP purse‐seine fisheries and environmental conditions, geographic extent and fishing set type (associated with dolphins, floating objects or in free‐swimming tuna schools). Our results suggest that water temperature, set type and geographic location (latitude, longitude and distance to nesting beaches) are the most important predictor variables to describe the probability of a capture event, with the highest iCPUE observed in sets made over floating objects. With the environmental predictors used, sea surface temperatures (SST) of 26–30°C and chlorophyll‐a (chl‐a) concentrations <0.36 mg m^?3 were associated with the highest probability of an incidental catch. Temporally, the highest probability of an incidental catch was observed in the second half of the year (June to December). Four regions were observed as high incidental catch hotspots: North and south of the equator between 0–10°N; 0–10°S and from 120 to 140°W; and along the Colombian coast and surrounding regions.     

Changes in thyroid hormone levels in eggs and larvae and in iodide uptake by eggs of coho and chinook salmon,Oncorhynchus kisutsch andO. tschawytscha

Developmental profiles of thyroxin (T₄), triiodothyronine (T₃) and radioactive iodide uptake were established for eggs and T₄ and T₃ profiles were established for larvae (whole-body, yolk-only and body-only) of coho and chinook salmon. T₄ and T₃ were consistently present in all samples. In eggs, hormone levels remained fairly constant in all cohorst for at least the first three weeks of incubation, but then fluctuated in both directions in some sample groups. Large increases in T₄ (from 9 ng/g to 245 ng/g) were seen in 1985 chinook eggs 28 days after fertilization. Radioactive iodide uptake (which was used as a possible indicator of thyroxinogenesis) increased at least 10-fold in both 1986 coho and chinook eggs from 23–30 days after fertilization. T₄ (62 ng/g) and T₃ (393 ng/g) were found in the bodies of 28-day-old 1986 chinook embryos. In whole larvae, hormone levels varied depending upon the cohort studied. In general, initial body-only concentrations of both T₄ and T₃ decreased as body weight increased, but before yolksac resorption was completed, both thyroid hormone content and concentration increased (except for chinook T₃). T₄ and T₃ content in larval yolk stayed constant as yolksac size decreased, resulting in increased thyroid hormone concentration in the yolksac. All of these data suggest that the initial source of thyroid hormones in coho and chinook salmon eggs is maternal, but that by approximately 3–4 weeks after fertilization, the developing embryos begin to produce their own thyroid hormones. After hatching, increases in tissue T₄ and T₃ concentration coupled with constant T₄ and T₃ content in diminishing yolksacs suggest that larvae also produce their own thyroid hormones; yolksac content then may reflect both the original maternal hormones and the larva-producted hormones.     

Einfluss selektiver mechanischer Fruchtbehangsregulierung auf Ethylensynthese als Stressindikator sowie Ertrag und Fruchtqualität bei Kernobst

The overall objective of this work was to improve fruit quality, break alternate bearing and reduce hand thinning using fewer chemicals in fruit crops. A device was constructed for mechanical thinning, which consisted of three independent horizontal rotors with ropes and freely adjustable angles on a frame, mounted on a front three point hitch and powered by the tractor hydraulics. This can be adapted to any fruit tree trained as spindle, Solaxe, (tall) vertical axis or fruit wall (le mur fruitier) irrespective of rootstock employed. Rotor speed varied from 300 to 460?rpm at either 5 or 7.5?km/h tractor speed. Eight-year-old or twelve-old apple trees cvs. ‘Gala’ and ‘Golden Delicious’ were mechanically thinned in 2007 between pink bud and full bloom (flower bud stages 6–8 or F1–F2) near Bonn, Germany; non-thinned and hand-thinned apple trees of the same block and variety served as control. Mechanically thinned flowering branches showed a similar amount of ethylene efflux (0.4–0.6?ppm C₂H₄/branch) as non-thinned flower branches, preventing potentially unexpected subsequent fruit drop, except for those removed by the rotors. The impact of the horizontal rotors on the branches was from the upper side and removed excessive flowers right to the tree trunk viz. the centre of the tree canopy, where fruits of lesser quality are expected leaving 2–3 flowers per cluster. Leaf damage was less than??10%, even at the fast rotor speed of 420?rpm, which was associated with negligible wood injury. Mechanical thinning induced firmer and sweeter fruit, i.e. tastier apples with longer shelf life, relative to control fruit from non-thinned apple trees. The greatest efficacy in terms of final fruit quality in the grading/sorting was achieved by a rotor speed of 360?rpm at a tractor speed of 5?km/h: Fruit mass increased by up to 20?g and the proportion of fruit larger than 70–75?mm by 10–30% compared with the fruit from non-thinned trees. Mechanical thinning with this newly constructed device led to a 10–20% reduction in yield, but increased returns due to better fruit size and colouration in apple with the potential to overcome alternate bearing.