Assessing genetic diversity of sweet potato (Ipomoea batatas (L.) Lam.) cultivars from tropical America using AFLP

The sweet potato genebank at the International Potato Center (CIP) maintains 5,526 cultivated I. batatas accessions from 57 countries. Knowledge of the genetic structure in this collection is essential for rational germplasm conservation and utilization. Sixty-nine sweet potato cultivars from 4 geographical regions (including 13 countries) of Latin America were randomly sampled and fingerprinted using AFLP markers. A total of 210 polymorphic and clearly scorable fragments were generated. A geographic pattern of diversity distribution was revealed by mean similarity, multidimensional scaling (MDS), and analysis of molecular variance (AMOVA). The highest genetic diversity was found in Central America, whereas the lowest was in Peru-Ecuador. The within-region variation was the major source of molecular variance. The between-regions variation, although it only explains 10.0% of the total diversity, is statistically significant. Cultivars from Peru-Ecuador, with the lowest level of within region diversity, made the most significant contribution to the between region differentiation. These results support the hypothesis that Central America is the primary center of diversity and most likely the center of origin of sweet potato. Peru-Ecuador should be considered as a secondary center of sweet potato diversity.     

Geochemistry of mercury in pristine and flooded ferralitic soils of a tropical rain forest in French Guiana,South America

In ferralitic soils of the dense Guianese forest, mercury (Hg) concentrations of the surface horizons varied from 122 to 318 ng/g d.w. The behaviour and accumulation of Hg is not related to the accumulation of organic matter but to the penetration of humic substances and the progressive adsorption onto iron (Fe) oxy-hydroxydes in the mineral horizons. The flooding of such soils with the creation of a small reservoir has lead to a release of 20% of the Hg initially present. This observation is related to the reduction of the Fe oxy-hydroxydes and to the migration of the organo-metallic complexes to the water column. Although physico-chemical conditions are appropriate for bacterial methylation, methyl Hg (MeHg) levels of these soils are very low. The process regulating MeHg production and its possible loss from the soil are unknown.     

Limited genotype- and ploidy-related variation in the nutritive value of perennial ryegrass (Lolium perenne L.)

Abstract

Water-soluble carbohydrates and fibre fractions are important traits that influence forage utilization by the ruminant. Little is known about the quality variation among perennial ryegrass genotypes within the same maturity group or between near-isogenic diploids and tetraploids. The current study was carried out in the form of two experiments on two successive years (2006–2007) in three sites in Northern Germany. The main aim was to investigate the variation in nutritive value that could be attributed to differences in maturity among 20 intermediate heading perennial ryegrass genotypes or to differences in ploidy between near-isogenic diploids and tetraploids. Results of the first experiment revealed significant variation among the 20 tested genotypes in the investigated quality parameters that were consistent with the discovered variation in the maturity of the genotypes determined in terms of their Mean Stage by Count (MSC). In the second experiment, few but consistent significant differences were detected between near-isogenic diploids and tetraploids. The tetraploid derivatives had always significantly higher water-soluble carbohydrate content and lower neutral detergent fibre (NDF), acid detergent fibre (ADF) and acid detergent lignin (ADL) than their near-isogenic diploid parents.     

Respiration of three Belgian crops: Partitioning of total ecosystem respiration in its heterotrophic, above- and below-ground autotrophic components

An experimental system combining an eddy covariance system, a micrometeorological station and soil chambers placed in planted areas and in root exclusion zones was installed during three successive years in a production crop managed in a traditional way at the Lonzée experimental site (Belgium). Measurements were made successively on seed potato, winter wheat and sugar beet. The general objectives of the study were, first to evaluate the relative contributions to total ecosystem respiration (TER) of heterotrophic, above ground autotrophic and below ground autotrophic respiration over a succession of three agricultural crops (seed potato, winter wheat and sugar beet) cultivated on successive years at the same location and, secondly, to identify the driving variables of these contributions.Results showed that, during the observation periods, TER was dominated by autotrophic respiration (AR) (60-90%) and that AR was dominated by its above ground component (60-80%). HR was found to increase with temperature and to be independent of Gross Primary Production (GPP), whereas AR was driven by GPP and was mostly independent of temperature. The AR response to GPP was specific to the crop: not only AR intensity but also AR distribution between its above- (ARa) and below- (ARb) ground components were found to differ from one crop to another and, in the winter wheat, from one development stage to another. Generally, ARb contribution to AR was found larger when carbon allocation towards roots was more important.An uncertainty analysis was made and showed that the main sources of uncertainties on the estimates were the spatial variability for soil chamber measurements and uncertainties linked to the data gap filling method for eddy covariance measurements.     

LC-MS/MS quantification of sulforaphane and indole-3-carbinol metabolites in human plasma and urine after dietary intake of selenium-fortified broccoli

This study aimed at developing a sensitive LC-MS/MS method for the quantification of sulforaphane (SFN) and indole-3-carbinol metabolites in plasma and urine after dietary intake of regular and selenium-fertilized broccoli using stable isotope dilution analysis. In a three-armed, placebo-controlled, randomized human intervention study with 76 healthy volunteers, 200 g of regular (485 μg of total glucosinolates and <0.01 μg of selenium per gram fresh weight) or selenium-fertilized broccoli (589 μg of total glucosinolates and 0.25 μg of selenium per gram fresh weight) was administered daily for 4 weeks. Glucoraphanin and glucobrassicin metabolites quantified in plasma and urine were SFN-glutathione, SFN-cysteine, SFN-cysteinylglycine, SFN-acetylcysteine, and indole-3-carboxaldehyde, indole-3-carboxylic acid, and ascorbigen, respectively. Dietary intake of selenium-fertilized broccoli increased serum selenium concentration analyzed by means of atomic absorption spectroscopy by up to 25% (p < 0.001), but affected neither glucosinolate concentrations in broccoli nor their metabolite concentrations in plasma and urine compared to regular broccoli.     

Impact of 12-year field treatments with organic and inorganic fertilizers on crop productivity and mycorrhizal community structure

The effect of manure and mineral fertilization on the arbuscular mycorrhizal (AM) fungal community structure of sunflower (Helianthus annuus L.) plants was studied. Soils were collected from a field experiment treated for 12 years with equivalent nitrogen (N) doses of inorganic N, dairy manure slurry, or without N fertilization. Fresh roots of tall fescue (Festuca arundinacea Schreb.) grass collected from the field plots without N fertilization and unfumigated field soils were used as native microbial inoculum sources. Sunflower plants were sown in pots containing these soils, and three different means of manipulating the microbial community were set: unfumigated soil with fresh grass roots, fumigated soil with fresh grass roots, or fumigated soil with sterilized grass roots. Assessing the implications with respect to plant productivity and mycorrhizal community structure was investigated. Twelve AM fungal OTUs were identified from root or soil samples as different taxa of Acaulospora, Claroideoglomus, Funneliformis, Rhizophagus, and uncultured Glomus, using PCR-DGGE and sequencing of an 18S rRNA gene fragment. Sunflower plants grown in manure-fertilized soils had a distinct AMF community structure from plants either fertilized with mineral N or unfertilized, with an abundance of Rhizophagus intraradices-like (B2). The results also showed that AM inoculation increased P and N contents in inorganic N-fertilized or unfertilized plants, but not in manure-fertilized plants.     

Delineating the drivers of waning wildlife habitat: The predominance of cotton farming on the fringe of protected areas in the Mid-Zambezi Valley, Zimbabwe

Zimbabwe’s Mid-Zambezi Valley is of global importance for the emblematic mega-fauna of Africa. Over the past 30 years rapid land use change in this area has substantially reduced wildlife habitat. Tsetse control operations are often blamed for this. In this study, we quantify this change for the Dande Communal Area, Mbire District, of the Mid-Zambezi Valley and analyse the contribution of three major potential drivers: (1) increase in human population; (2) increase in cattle population (and the expansion of associated plough-based agriculture), and; (3) expansion of cotton farming. Although direct effects of land use change on wildlife densities could not be proven, our study suggests that the consequences for elephant and buffalo numbers are negative. All three of the above drivers have contributed to the observed land use change. However, we found farmland to have expanded faster than the human population, and to have followed a similar rate of expansion in cattle sparse, tsetse infested areas as in tsetse free areas where cattle-drawn plough agriculture dominates. This implies the existence of a paramount driver, which we demonstrate to be cotton farming. Contrary to common belief, we argue that tsetse control was not the major trigger behind the dramatic land use change observed, but merely alleviated a constraint to cattle accumulation. We argue that without the presence of a cash crop (cotton), land use change would have been neither as extensive nor as rapid as has been observed. Therefore, conservation agencies should be as concerned by the way people farm as they are by population increase. Conserving biodiversity without jeopardising agricultural production will require the development of innovative technological and institutional options in association with policy and market interventions.     

Factors influencing the occurrence of fall armyworm parasitoids in Zambia

Journal of Pest Science - Invasive alien species have environmental, economic and social impacts, disproportionally threatening livelihood and food security of smallholder farmers in low- and...     

Spatial and temporal genetic variation of Drosophila suzukii in Germany

Native to Southeast Asia, the spotted wing drosophila (SWD), Drosophila suzukii Matsumura, rapidly invaded America and Europe in the past 20 years. As a crop pest of soft-skinned fruits with a wide range of host plants, it threatens the fruit industry worldwide, causing enormous economic losses. To control this invasive pest species, an understanding of its population dynamics and structure is necessary. Here, we report the population genetics and development of SWD in Germany from 2017–19 using microsatellite markers over 11 different sample sites. It is the first study that examines SWD’s genetic changes over 3 years compared to multiple international SWD laboratory strains. Results show that SWD populations in Germany are highly homogenous without differences between populations or years, which indicates that populations are well adapted, migrate freely, and multiple invasions from outside Germany either did not take place or are negligible. Such high genetic variability and migration between populations could allow for a fast establishment of the pest species. This is especially problematic with regard to the ongoing spread of this invasive species and could bear a potential for developing pesticide resistance, which could increase the impact of the SWD further in the future.