Macroalgal meadow habitats support fish and fisheries in diverse tropical seascapes

Canopy‐forming macroalgae can construct extensive meadow habitats in tropical seascapes occupied by fishes that span a diversity of taxa, life‐history stages and ecological roles. Our synthesis assessed whether these tropical macroalgal habitats have unique fish assemblages, provide fish nurseries and support local fisheries. We also applied a meta‐analysis of independent surveys across 23 tropical reef locations in 11 countries to examine how macroalgal canopy condition is related to the abundance of macroalgal‐associated fishes. Over 627 fish species were documented in tropical macroalgal meadows, with 218 of these taxa exhibiting higher local abundance within this habitat (cf. nearby coral reef) during at least one life‐history stage. Major overlap (40%–43%) in local fish species richness among macroalgal and seagrass or coral reef habitats suggest macroalgal meadows may provide an important habitat refuge. Moreover, the prominence of juvenile fishes suggests macroalgal meadows facilitate the triphasic life cycle of many fishes occupying diverse tropical seascapes. Correlations between macroalgal canopy structure and juvenile abundance suggests macroalgal habitat condition can influence levels of replenishment in tropical fish populations, including the majority of macroalgal‐associated fishes that are targeted by commercial, subsistence or recreational fisheries. While many macroalgal‐associated fishery species are of minor commercial value, their local importance for food and livelihood security can be substantial (e.g. up to 60% of landings in Kenyan reef fisheries). Given that macroalgal canopy condition can vary substantially with sea temperature, there is a high likelihood that climate change will impact macroalgal‐associated fish and fisheries.     

The effect of simulated rat damage on irrigated rice yield and compensation

A field experiment was conducted to investigate the impact of simulated rat damage on grain yield in irrigated lowland rice in An Giang province, in the Mekong Delta of Vietnam. Rat damage was simulated by making a 45° cut at the base of the rice tillers about 3–5 cm above the soil surface. 0% (control), 5%, 10%, 25% and 50% of the tillers were removed at the tillering (25 days after sowing, DAS), panicle initiation (43 DAS), flowering (72 DAS) and ripening (87 DAS) stages. The total number of mature tillers, immature tillers and percent filled grains, the weight of 1000 grains and grain yields were recorded. The rice crop completely compensated by increased tillering and yield for tillers damaged up to 50% at the tillering stage. However, the damage and yield loss were highly variable. The ability of the rice crop to compensate at later stages progressively reduced. The implications for managing rat damage to rice crops are (1) rodent control activities should be applied before 10% of tillers are damaged at the tillering stage, and (2) a well balanced nitrogen supply during the tillering stage could potentially assist the rice plants to better compensate for rat damage.     

An investigation into reduced milk production following dietary alteration on an Irish dairy farm

A nutritional evaluation of an Irish dairy herd indicated gross overfeeding of late lactation cows, over-conditioning of cows at parturition and a high rate of body condition loss in early lactation. Metabolisable-energy based nutritional modelling software was used to guide recommended dietary changes to prevent excessive condition gain in late lactation. Immediately following the implementation of the changes there was an unexpected reduction in performance affecting both milk yield and protein concentration. An investigation into the poor performance revealed underestimation of peak milk yield; over-estimation of maize silage quality; a large difference in the concentrate being fed compared to the concentrate recommended, and failure of the blend of concentrate ingredients to maintain the intended proportions in the in-parlour feeding system. The estimated maximum cumulative effect of these errors was to cause undersupply of energy and protein in the recommended diet of 16% and 3% respectively to cows in early lactation. Use of a net-energy nutritional model would have indicated a requirement for a higher energy supply in this case. This report highlights the challenges in obtaining accurate on-farm data for use in dairy cow nutritional models.     

Detection of water in the LCROSS ejecta plume

Several remote observations have indicated that water ice may be presented in permanently shadowed craters of the Moon. The Lunar Crater Observation and Sensing Satellite (LCROSS) mission was designed to provide direct evidence. On 9 October 2009, a spent Centaur rocket struck the persistently shadowed region within the lunar south pole crater Cabeus, ejecting debris, dust, and vapor. This material was observed by a second "shepherding" spacecraft, which carried nine instruments, including cameras, spectrometers, and a radiometer. Near-infrared absorbance attributed to water vapor and ice and ultraviolet emissions attributable to hydroxyl radicals support the presence of water in the debris. The maximum total water vapor and water ice within the instrument field of view was 155 ± 12 kilograms. Given the estimated total excavated mass of regolith that reached sunlight, and hence was observable, the concentration of water ice in the regolith at the LCROSS impact site is estimated to be 5.6 ± 2.9% by mass. In addition to water, spectral bands of a number of other volatile compounds were observed, including light hydrocarbons, sulfur-bearing species, and carbon dioxide.     

Morphological and molecular analysis of genetic diversity in jackfruit

Summary

RAPD markers were used to estimate genetic diversity in 12 high-yielding jackfruit (Artocarpus heterophyllus Lamk.) accessions obtained from different locations in southern India. Marker data were compared with morphological data obtained over three successive seasons. PCR-amplifiable DNA was isolated using the CTAB method and 171 amplified fragments were obtained using 23 random primers. The genetic dissimilarity matrix was calculated based on Squared Euclidian Distances, which revealed a maximum genetic distance of 7.9% between a clone of ‘Mottavarica’ (‘M₀’), and ‘Chandrahalasu’ from distant locations, while the minimum genetic distance (5%) was between the genotypes (‘M₀’) and ‘Kerala’, indicating their similar geographical origin. Ward's method of cluster analysis grouped all individuals on the dendrogram into two major clusters according to their geographical location. The present study showed low-to-moderate genetic diversity among the 12 jackfruit accessions, which will assist in the identification and management of jackfruit germplasm for breeding purposes.     

Temporal and compositional differences of arbuscular mycorrhizal fungal communities in conventional monocropping and tree-based intercropping systems

Previous research has found that conventional agricultural systems adversely affect arbuscular mycorrhizal (AM) fungi. However, there is little information on how more ecologically sustainable agricultural practices such as tree-based intercropping (TBI) influence AM fungal communities. In this study, we investigated whether TBI promotes a more abundant and diverse AM fungal community compared to conventional monocropping (CM). Abundance was estimated by measuring spore abundance and hyphal length in soil, and AM fungal colonization of corn (Zea mays) roots. Overall, AM fungal abundance was similar in both systems as corn roots from the CM and TBI systems were heavily colonized (>50%) by AM fungi throughout the growing season. Additionally, soil samples from the CM and TBI systems contained similar spore densities and hyphal length. Molecular analysis of the AM fungal community was assessed using terminal restriction fragment length polymorphism (T-RFLP) analysis of large subunit rRNA genes amplified from roots in the two cropping systems. A total of fourteen AM fungal phylotypes that belonged to the Glomeraceae were found in the two cropping systems. The TBI system had a higher AM fungal richness and contained several taxa not found in the CM system. Molecular analysis of AM fungal communities also revealed significant temporal and compositional differences between the TBI and CM systems. Within the TBI system, tree species differentially influenced the AM fungal community composition in the alley cropping regions. Future research should focus on determining whether compositional differences among AM fungal communities in CM and TBI systems have a functional effect on crop growth and productivity.     

How pristine are tropical forests? An ecological perspective on the pre-Columbian human footprint in Amazonia and implications for contemporary conservation

Archeologists, paleoecologists and anthropologists argue that ecologists need to give greater consideration to the pre-historical influence of humans in shaping the current structure and composition of tropical forests. We examine these arguments within the context of Amazonia, and assess the extent to which (i) the concepts of “pristine forests” and “cultural parklands” are mutually exclusive, (ii) the aggregated distribution of some plants necessarily indicates enrichment planting, (iii) pre-Columbian human disturbance has increased forest biodiversity, (iv) pre-Columbian indigenous practices were always sustainable, and (v) if indeed, the ecological impacts of pre-Columbian peoples are relevant for modern biodiversity conservation. Overall, we reject the notion that “the pristine myth has been thoroughly debunked” by archeological evidence, and suggest that the environmental impacts of historical peoples occurred along gradients, with high-impacts in settlements and patches of Amazonian Dark Earth (ADE), lesser impacts where occasional enrichment planting took place in forests surrounding agricultural plots, and a very low influence (in terms of light hunting pressure and other types of resource extraction) across vast areas of Amazonia that may always have been far from permanent settlements and navigable rivers. We suggest that the spatial distribution of pre-Columbian finds is given more attention, and urge caution before case studies are extrapolated to the entire Basin. Above all, we feel that debates over “naturalness” and environmental impacts of pre-Columbian humans are of limited relevance to present and future biodiversity conservation, and can detract from the major challenges facing Amazonia and other tropical forest regions today.     

Chemical synthesis, in vitro acetohydroxyacid synthase (AHAS) inhibition, herbicidal activity, and computational studies of isatin derivatives

Acetohydroxyacid synthase (AHAS) catalyzes the first common step in the biosynthesis of the branched-chain amino acids. As a result of its metabolic importance in plants, it is a target for many commercial herbicides. Virtual screening analysis inspired the evaluation of 19 commercially available isatin analogues and 13 newly synthesized isatin derivatives as novel AHAS inhibitors and for their herbicidal activity. The best compound demonstrated 95% inhibition of the activity of Arabidopsis thaliana AHAS at a concentration of 100 mg L(-1), whereas the herbicidal activities of three compounds reached 50% inhibition at a concentration of 10 mg L(-1) using the rape root growth test. CoMFA contour models were established to understand the structure-activity relationships for this class of AHAS inhibitor. The compounds were docked to the active site cavity of A. thaliana AHAS using FlexX, and the dominant binding mode was consistent with frontier molecular orbital from DFT calculations. This is the first comprehensive study of isatin derivatives as AHAS inhibitors and provides a valuable starting point for the design of new herbicides.