Seedling demography and establishment of Cryptomeria japonica in a cool-temperate, old-growth, conifer hardwood forest in the snowy region of Japan

To clarify the establishment pattern of Cryptomeria japonica seedlings, the demography of current-year seedlings was studied under various micro-environmental conditions for 2 years in a cool-temperate old-growth forest in the snowy region of Japan. In both years, more than 70% of seedlings that emerged died within a year, and differences in the survival rate of seedlings with respect to micro-environmental conditions were similar. While a number of seedlings survived at the sites on fallen logs and in mineral soil, almost no seedlings survived at the sites with either broad-leaved or coniferous litters at the end of the first growing season. The negative litter effect may kill most small seedlings of C. japonica. In addition, we found that survival rates of the seedlings were greater as the distance from the nearest adult and canopy openness increased. An analysis using Quantification Theory I showed that, of the possible micro-environmental factors, substrate conditions had the strongest effect on the survival of seedlings. The analysis also indicated that distance from the nearest adult and canopy openness also affected seedling survival significantly and to almost the same extent, although the effects were weaker than those for the substrate condition. Given the limited establishment sites for C. japonica seedlings, layering is suggested to be the main mode of regeneration in this forest.     

Estimates of genetic parameters for chemical traits of meat quality in Japanese black cattle

Genetic parameters for 54 carcass and chemical traits, such as general composition (moisture, crude fat and crude protein), fatty acid composition and water‐soluble compounds (free amino acids, peptides, nucleotides and sugars) of 587 commercial Japanese Black cattle were assessed. Heritability estimates for carcass traits and general composition ranged between 0.19–0.28, whereas those for fatty acid composition ranged between 0.11–0.85. Most heritability estimates for water‐soluble compounds were lower than 0.30; these traits were affected by aging period. Moderate heritability was observed for glutamine, alanine, taurine, anserine, inosine 5′‐monophosphate (IMP), inosine and myo‐inositol. In particular, heritability estimates were the highest (0.66) for taurine. Traits with moderate heritability were unaffected by aging period, with the exception of IMP, which was affected by aging period but exhibited moderate heritability (0.47). Although phenotypic correlations of water‐soluble compounds with carcass weight (CW), beef marbling standard (BMS) and monounsaturated fatty acid were generally low, genetic correlations between these traits were low to high. At the genetic level, most of the water‐soluble compounds were positively correlated with monounsaturated fatty acid but negatively correlated with CW and BMS. Thus, our results indicate that genetic variance and correlations could exist and be captured for some of the water‐soluble compounds.     

Bird responses to broad-leaved forest patch area in a plantation landscape across seasons

Although plantation forests have widely replaced native forests worldwide, few studies have examined the effects of plantation forestry on organisms at the landscape level. In this study, we examined the effects of broad-leaved forest patch area (1.4–312 ha) on bird assemblages in a conifer plantation-dominated landscape during wintering and breeding seasons. We also surveyed birds in the plantation matrix and treated the patch area of the matrix as 0. We examined whether the detection rates of species changed suddenly across patch area (threshold) using segmented regression. We found that species richness increased with patch area in both seasons. Responses of detection rates to patch area varied and were categorized as follows: insensitive, linear increase and decrease, quadratic increase and decrease, concave and convex. Thresholds indicating that the detection rate suddenly increased above a certain patch area were found for two species only in the winter. Species responses varied more in the winter than in the breeding season. Certain ecological traits of species were consistently associated with the responses to patch area across seasons (migratory strategy, nesting substrate and foraging trait), while body weight was only associated in the winter. Because species richness and detection rates of many species were high in large patches, large broad-leaved forests (especially >40 ha) should be retained and restored with high priority. Additionally, bird responses to patch area in the winter should not be ignored because many species required large patches during the winter season.     

Changes in fructooligosaccaride composition and related enzyme activities of burdock root during low-temperature storage

Changes in the composition of fructooligosaccarides (FOSs) and related enzyme activities of burdock root during low-temperature storage (1 °C) were measured. Burdock root is composed of monosaccharides, such as glucose and fructose, disaccharides, such as sucrose, and FOS in the extracted carbohydrates. The composition was the highest in fructose, followed by sucrose, FOS, and glucose. The FOS composition was the highest in 1-kestose, followed by nystose and 1-fructofuranosyl nystose. The fructose and glucose contents in burdock root during storage at 1 °C decreased significantly, whereas the sucrose content increased sharply. In contrast, the 1-kestose, nystose, and 1-fructofuranosyl nystose contents significantly increased. The activities of sucrose:sucrose 1-fructosyl transferase (1-SST) and fructan:fructan 1-fructosyl transferase (1-FFT) increased sharply and then gradually decreased, and they were closely related to the changes in FOS content. However, the activity of fructan 1-exohydrolase (1-FEH) was constant. These results indicate that changes in the FOS composition and related enzyme activities of burdock root might be related to low temperature during long term storage.     

Localization of the candidate genes ELOVL5 and SCD1 for 'male effect' pheromone synthesis in goats (Capra hircus)

The 'male effect' is a well-known phenomenon in female sheep and goats, whereby pheromone-induced activation of reproductive function occurs. In a previous study, we showed that the genes for elongation of long-chain fatty acids family member 5 (ELOVL5) and stearoyl-CoA desaturase 1 (SCD1) increased their expression significantly, concomitant with induction of pheromone synthesis. Therefore, these genes were considered to be prime candidate genes for pheromone synthesis. In the present study, we performed in situ hybridization to investigate where these two genes are expressed in goat skin. Strong positive signals were detected for both genes in the head skin of the male goat, which is the main site of pheromone production, and were mainly in the basal layer of the sebaceous gland cells, with the remaining cells showing negligible signals. None of the cells in the rump skin of the male goat or the head skin of the orchidectomized goat, neither of which produce pheromone, exhibited strong positive signals. The present study demonstrates that expression of these two candidate genes for pheromone synthesis is primarily localized in the sebaceous glands of the pheromone-producing skin region.     

Reduced seed production, inbreeding, and pollen shortage in a small population of a threatened tree, Magnolia stellata

We investigated how genetic factors and pollen shortage affect seed production in a small population of Magnolia stellata, a threatened insect-pollinated tree. We used microsatellite and manual pollination techniques, and compared a small population to a large one. Compared to the large population, the small population showed low allelic variation and had an F_IS significantly greater than 0 in adults, indicating that genetic deterioration, including genetic drift and inbreeding, may have occurred in adults. Manual self-pollination lowered seed production relative to manual cross-pollination to a different extent between populations: δ (the magnitude of inbreeding depression due to self-fertilization) was lower in the small population than in the large population. However, under natural pollination, the estimated embryo mortality rates after ovules self-fertilized were similar between the two populations because the primary selfing rate was higher in the small population. The ovule mortality rate due to pollen shortage and that due to factors independent of pollen shortage and selfing were both approximately 10% higher in the small population, suggesting that pollen transfer may have decreased and genetic deterioration effects may have increased in that population. These factors reduced seed production in the small population (female reproductive success = 0.3%) compared to the large population (2.6%). Our results suggest that seed production in the small population of M. stellata is strictly limited by elevated pollen shortage, selfing, and genetic deterioration in adults, which accelerate the risk of extinction.     

Improvement of cumulus-free oocyte maturation in vitro and its application to microinsemination with primary spermatocytes in mice

In micromanipulation experiments using immature oocytes, final ooplasmic maturation is often compromised because the oocytes are usually first freed from their nurturing cumulus cells. This study was undertaken to determine whether cumulus-free in vitro maturation (IVM) in mice could be improved by modifying IVM medium having defined components. Cumulus-free germinal vesicle (GV) stage oocytes were subjected to IVM in either alphaMEM medium, TYH medium, or a 1:1 mixture of the two (termed TaM). TYH medium produced a better maturation rate (181/196; 92.3%) than alphaMEM (184/257; 71.6%). However, alphaMEM supported better embryo development to the morula/blastocyst stage than TYH following in vitro fertilization (93.3% vs. 76.5%) or parthenogenetic activation (82.4% vs. 60.4%). Mitochondrial distribution in MII oocytes was diffuse following IVM in alphaMEM, but was aggregated with TYH. The maturation promoting factor (MPF) activity in MII oocytes was significantly higher in TYH than in alphaMEM (P<0.05). Oocytes cultured in TaM had intermediate characteristics and essentially resembled in vivo matured oocytes, with the mitochondrial distribution pattern being most typical of that condition. The highest rate of development from GV oocytes to full-term fetuses following in vitro fertilization and embryo transfer to foster mothers (23.8%) was obtained using TaM. When this IVM system was applied to MI oocytes injected with spermatocytes, offspring were first obtained without cytoplasmic replacement at MII. Thus, optimization of the culture medium can considerably improve the quality of cumulus-free oocyte IVM in mice.     

Genomic evaluation using SNP‐ and haplotype‐based genomic relationship matrices in a closed line of Duroc pigs

A simulation analysis and real phenotype analysis were performed to evaluate the impact of three different relationship matrices on heritability estimation and prediction accuracy in a closed‐line breeding of Duroc pigs. The numerator relationship matrix (NRM), single nucleotide polymorphism (SNP)‐based genomic relationship matrix (GRM) (G_S), and haplotype‐based GRM (G_H) were applied in this study. We used PorcineSNP60 genotype array data (38 114 SNPs) of 831 Duroc pigs with four selection traits. In both heritability estimation and prediction accuracy, the accuracy depended on the number of animals with records. For heritability estimation, a large difference in the results among three relationship matrices was not shown, but the trend of the estimated heritabilities between GRMs, that is G_S < G_H, was shown in this population. For the accuracy of prediction values in test animals, the accuracies of prediction values obtained by two GRMs were higher than that by the NRM in this population. The accuracies obtained by GRMs using animals with no records were lower than that by the NRM using animals with their performance records, but were close to that by the NRM using animals with full‐sib testing records.