Genetic diversity and population structure of Raffaelea quercus‐mongolicae,a fungus associated with oak mortality in South Korea

Raffaelea quercus‐mongolicae is a fungus associated with oak wilt and deemed to cause extensive oak mortality in South Korea. Since the discovery of this fungus on a dead Mongolian oak (Quercus mongolica) in 2004, the mortality continued to spread southwards in South Korea. Despite continued expansion of the disease and associated significant impacts on forest ecosystems, information is lacking about the origin and genetic diversity of R. quercus‐mongolicae. Restriction‐site‐associated DNA (RAD) sequencing was used to assess genetic diversity and population structure among five populations (provinces) of R. quercus‐mongolicae in South Korea. In total, 179 single nucleotide polymorphisms (SNPs) were identified among 2,639 RAD loci across the nuclear genome of the 54 R. quercus‐mongolicae isolates (0.0012 SNPs per bp), which displayed an overall low expected heterozygosity and no apparent population structure. The low genetic diversity and no apparent population structure among South Korean populations of this ambrosia beetle‐vectored fungus support the hypothesis that this fungus was introduced to South Korea.     

Identification of quantitative trait loci controlling soybean seed weight in recombinant inbred lines derived from PI 483463 (Glycine soja) × ‘Hutcheson’ (G. max)

The objective of this study was to identify quantitative trait loci (QTLs) controlling 100‐seed weight in soybean using 188 recombinant inbred lines (RIL) derived from a cross of PI 483463 and ‘Hutcheson’. The parents and RILs were grown for 4 years (2010–2013), and mature, dry seeds were used for 100‐seed weight measurement. The variance components of genotype (a), environment (e) and a × e interactions for seed weight were highly significant. The QTL analysis identified 14 QTLs explaining 3.83–12.23% of the total phenotypic variation. One of the QTLs, qSW17‐2, was found to be the stable QTL, being identified in all the environments with high phenotypic variation as compared to the other QTLs. Of the 14 QTLs, 10 QTLs showed colocalization with the seed weight QTLs identified in earlier reports, and four QTLs, qSW5‐1, qSW14‐1, qSW15‐1 and qSW15‐2, found to be the novel QTLs. A two‐dimensional genome scan revealed 11 pairs of epistatic QTLs across 11 chromosomes. The QTLs identified in this study may be useful in genetic improvement of soybean seed weight.     

Comparison of single and competitive metal adsorption by pepper stem biochar

Carbon-based sorbents have been proven to be cost-effective in removing pollutants from wastewater. Biochar from plant residue and agricultural waste is an emerging treatment technology. However, there is a limited number of studies on the effects of various biochar sources on metal adsorption. The aim of this study was using batch experiment to evaluate the adsorption of heavy metals in single- and multi-metal conditions onto pepper stem biochar. The maximum adsorption capacities (mg g^?1) of metals by pepper stem biochar were in the order of Pb (131) ? Cr (76) > Cd (67) > Cu (48) > Zn (31) in the single-metal adsorption isotherm and Pb (91) ? Cu (39) > Cr (29) > Zn (20) > Cd (13) in the multi-metal adsorption isotherm. Lead was the most retained cation, whereas Cr and Cd could be easily exchanged and substituted by other metals (Pb or Cu). For pepper stem biochar, the Langmuir model provided a slightly better fit than the Freundlich model. Results from the batch experiments show that competitive adsorption among metals increases the mobility of these metals. Particularly, Cd adsorption capacity in multi-metal conditions was significantly reduced. Overall, the results suggested that competitive adsorption studies are necessary for obtaining an accurate estimation of the metal retention capacity of pepper stem biochar in natural environments.     

Characterization of 12 Novel Microsatellite Markers of Sogatella furcifera (Hemiptera: Delphacidae) Identified From Next-Generation Sequence Data

The white-backed planthopper, Sogatella furcifera (Horváth) (Hemiptera: Delphacidae), is a major pest of rice and has long-range migratory behavior in Asia. Microsatellite markers (simple sequence repeats) have been widely used to determine the origins and genetic diversity of insect pests. We identified novel microsatellite loci for S. furcifera samples collected from Laos, Vietnam, and three localities in Bangladesh from next-generation Roche 454 pyrosequencing data. Size polymorphism at 12 microsatellite loci was verified for 40 adult individuals collected from Shinan, South Korea. The average number of alleles per locus was 7.92. The mean values of observed (H_o) and expected heterozygosities (H_E) were 0.615 and 0.757, respectively. These new microsatellite markers will be a resource for future ecological genetic studies of S. furcifera samples across more broad geographic regions in Asia and may assist in estimations of genetic differentiation and gene flow among populations for implementation of more effective management strategies to control this serious rice pest.     

Xyloketal B Suppresses Glioblastoma Cell Proliferation and Migration in Vitro through Inhibiting TRPM7-Regulated PI3K/Akt and MEK/ERK Signaling Pathways

Glioblastoma, the most common and aggressive type of brain tumors, has devastatingly proliferative and invasive characteristics. The need for finding a novel and specific drug target is urgent as the current approaches have limited therapeutic effects in treating glioblastoma. Xyloketal B is a marine compound obtained from mangrove fungus Xylaria sp. (No. 2508) from the South China Sea, and has displayed antioxidant activity and protective effects on endothelial and neuronal oxidative injuries. In this study, we used a glioblastoma U251 cell line to (1) explore the effects of xyloketal B on cell viability, proliferation, and migration; and (2) investigate the underlying molecular mechanisms and signaling pathways. MTT assay, colony formation, wound healing, western blot, and patch clamp techniques were employed. We found that xyloketal B reduced cell viability, proliferation, and migration of U251 cells. In addition, xyloketal B decreased p-Akt and p-ERK1/2 protein expressions. Furthermore, xyloketal B blocked TRPM7 currents in HEK-293 cells overexpressing TRPM7. These effects were confirmed by using a TRPM7 inhibitor, carvacrol, in a parallel experiment. Our findings indicate that TRPM7-regulated PI3K/Akt and MEK/ERK signaling is involved in anti-proliferation and migration effects of xyloketal B on U251 cells, providing in vitro evidence for the marine compound xyloketal B to be a potential drug for treating glioblastoma.     

Spatial abundance patterns and recruitment of a virus‐affected commercial mollusc fishery

Infectious pathogens figure prominently among those factors threatening marine wildlife. Mass mortality events caused by pathogens can fundamentally alter the structure of wild fish stocks and depress recruitment rates and yield. In the most severe instances, this can precipitate stock collapses resulting in dramatic economic losses to once valuable commercial fisheries. An outbreak of a herpes‐like virus among commercially fished abalone populations in the south‐west fishery of Victoria, Australia, during 2006–2007, has been associated with high mortality rates among all cohorts. Long‐term records from fishery‐independent surveys of blacklip abalone Haliotis rubra (Leach) enabled abundance from pre‐ and post‐viral periods to be analysed to estimate stock density and biomass. The spatial distribution of abundance in relation to physical habitat variables derived from high‐resolution bathymetric LiDAR data was investigated. Significant differences were observed in both measures between pre‐ and post‐viral periods. Although there was some limited evidence of gradual stock improvement in recent years, disease‐affected reefs have remained below productivity rates prior to the disease outbreak suggesting a reduction in larval availability or settlement success. This was corroborated by trends in sublegal sized blacklip abalone abundance that has yet to show substantial recovery post‐disease. Abundance data were modelled as a function of habitat variables using a generalised additive model (GAM) and indicated that high abundance was associated with complex reef structures of coastal waters (<15 m). This study highlights the importance of long‐term surveys to understand abalone recovery following mass mortality and the links between stock abundance and seafloor variability.     

Watermelon lycopene β-cyclase: promoter characterization leads to the development of a PCR marker for allelic selection

In the carotenoid biosynthetic pathway, lycopene β-cyclase (LCYB) catalyzes the cyclization that converts lycopene into β-carotene. Only a single copy of LCYB was identified and was suggested to encode a chromoplast-specific LCYB (CYCB type) in watermelon [Citrullus lanatus (Thunb.), Matsum & Nakai]. Splicing variants in the 5′-untranslated region were identified, but alternative splicing did not provide an explanation of the regulation of carotenoid accumulation in watermelon flesh. A quantitative assay using real time-PCR showed that differential expression was not detected between red- and canary yellow-fleshed watermelon cultivars. LCYB promoter regions were isolated and characterized, and a sequence difference was identified in the promoter region between red and canary yellow LCYB alleles. This polymorphism did not change the expression of LCYB, but does provide a reliable marker for discriminating LCYB alleles for red and canary yellow flesh. To develop a PCR-based marker to distinguish between the two LCYB alleles, we designed primers flanking the polymorphic region. The newly developed marker, designated Clcyb.600, co-segregated perfectly with flesh color phenotypes and single nucleotide polymorphism (SNP) markers developed in our previous study. Moreover, the Clcyb.600 marker offers easier discrimination of LCYB alleles than SNP or cleaved amplified polymorphic sequence markers, as it does not require restriction enzyme digestion for genotyping. Genotyping of LCYB promoter alleles in various commercial cultivars and plant introductions indicated that watermelon cultivars can be classified into two groups, those carrying a red LCYB allele or a canary yellow LCYB allele.     

Genotypic difference in spikelet sterility response to air temperature during the reproductive stage of rice

This experiment was conducted to evaluate the varietal differences of spikelet sterility response to air temperature during the reproductive stage. Six rice varieties differing in maturity group (early-maturing; Unkwangbyeo, Odaebyeo, medium-maturing; Andabyeo, Hwasungbyeo, and mid-late maturing; Donganbyeo, Chuchungbyeo) were grown under ambient temperature (AT) conditions before being transferred to the temperature-controlled plastic houses. For the synchronization of the growth stage, 15 rice seedlings (2011) and 10 rice seedlings (2012) per pot were transplanted in a circle and only main stems were grown by removing tillers at early stage of their emergence. At the initial heading stage, pots for each variety were transferred to the four plastic houses that were controlled to AT, AT + 1.5°C, AT + 3.0°C, and AT + 5.0°C, respectively. Spikelet fertility was significantly decreased due to high temperature-induced spikelet sterility at AT + 3.0 and/or AT + 5.0°C treatment during flowering time in 2011. Spikelet fertility in 2012 was much lower than in 2011 even at the AT treatment because of high temperature-induced spikelet sterility at the micosporogenesis stage. Critical temperature (Tc) that induces 50% spikelet sterility at flowering time was estimated by fitting the temperature response of spikelet fertility to a logistic function. Tc ranged from 34.6°C (Odaebyeo) to 39.7°C (Hwasungbyeo), Odaebyeo being significantly more sensitive to high temperature-induced spikelet sterility than the other varieties. This result has shown that response of spikelet sterility to higher temperature is different according to rice varieties. However, further study should be done to arrive at a concrete conclusion.     

Effect of Phlorofucofuroeckol A and Dieckol Extracted from Ecklonia cava on Noise-induced Hearing Loss in a Mouse Model

One of the well-known causes of hearing loss is noise. Approximately 31.1% of Americans between the ages of 20 and 69 years (61.1 million people) have high-frequency hearing loss associated with noise exposure. In addition, recurrent noise exposure can accelerate age-related hearing loss. Phlorofucofuroeckol A (PFF-A) and dieckol, polyphenols extracted from the brown alga Ecklonia cava, are potent antioxidant agents. In this study, we investigated the effect of PFF-A and dieckol on the consequences of noise exposure in mice. In 1,1-diphenyl-2-picrylhydrazyl assay, dieckol and PFF-A both showed significant radical-scavenging activity. The mice were exposed to 115 dB SPL of noise one single time for 2 h. Auditory brainstem response(ABR) threshold shifts 4 h after 4 kHz noise exposure in mice that received dieckol were significantly lower than those in the saline with noise group. The high-PFF-A group showed a lower threshold shift at click and 16 kHz 1 day after noise exposure than the control group. The high-PFF-A group also showed higher hair cell survival than in the control at 3 days after exposure in the apical turn. These results suggest that noise-induced hair cell damage in cochlear and the ABR threshold shift can be alleviated by dieckol and PFF-A in the mouse. Derivatives of these compounds may be applied to individuals who are inevitably exposed to noise, contributing to the prevention of noise-induced hearing loss with a low probability of adverse effects.     

Animal breeding systems and big game hunting: Models and application

We apply an age- and stage-structured model incorporating varying harem sizes, paternal care and infanticide to examine the effect of hunting on sustainability of populations. Compared to standard carnivore and herbivore models, these models produce different outcomes for sustainable offtake when either adults, or adult males are harvested. Larger harem size increases sustainable offtake whereas paternal care and infanticide lowers it. Where males are monogamous, populations are vulnerable to male offtake, regardless of paternal care. Surprisingly, an incidental take of 10% of other age-sex-classes has very little effect on these findings. Indiscriminate (subsistence) hunting of all age-sex classes has a dramatic effect on certain populations. Applying these behavior-sensitive models to tourist hunting in the Selous Game Reserve, Tanzania, we find that across the Reserve hunting quotas were generally set at sustainable rates except for leopard (Panthera pardus). In certain hunting blocks within the Reserve, however, quotas for eland (Taurotragus oryx), hartebeest (Alcelaphus buselaphus), lion (Panthera leo), reedbuck (Redunca arundinum), sable antelope (Hippotragus niger), warthog (Phacochoerus aethiopicus) and waterbuck (Kobus ellipsiprymnus) are set at unsustainably high rates. Moreover, particular blocks are consistently awarded high quotas. Behaviorally sensitive models refine predictions for population viability, specify data required to make predictions robust, and demonstrate the necessity of incorporating behavioral ecological knowledge in conservation and management.