A preliminary genetic analysis of fibre traits and the use of new genomic SSRs for genetic diversity in jute

Jute is one of the most important fibre crops, which is second only to cotton in providing environment-friendly (biodegradable and renewable) ligno-cellulose fibre. In order to improve this largely neglected crop, we conducted a preliminary study involving the following: (i) analysis of nature and extent of the genetic variability for fibre yield and four other related traits in a set of 81 genotypes belonging to two commercially cultivated Corchorus species (45 genotypes of C. olitorius + 36 genotypes of C. capsularis), (ii) development and analysis of a set of simple sequence repeat (SSR) markers from C. olitorius, and (iii) use of a sub-set of SSRs for assessment of genetic diversity in the above set of 81 genotypes. The results suggested quantitative nature of fibre yield and other related traits, with a preponderance of dominance component in genetic variance. A sub-set of 45 SSRs derived from C. olitorius, when used for a study of DNA polymorphism and genetic diversity, showed high transferability of these C. olitorius SSRs to C. capsularis. The average number of alleles for individual SSRs was surprisingly low (3.04 for both species, 2.02 for C. capsularis and 2.51 for C. olitorius), and so was the average polymorphic information content (PIC; 0.23 and 0.24 in two species). In the dendrogram obtained using a similarity matrix, the 81 genotypes were grouped into three clusters, which largely corresponded to the two species, Cluster I belonging mainly to C. capsularis and the other two closely related clusters (clusters II and III) belonging to C. olitorius. It was also shown that a minimum of 15 SSRs could give the same information as 41 SSRs, thus making many SSRs redundant. The SSR markers developed during the present study and to be developed in future will prove useful not only for evaluation of genetic diversity, but also for molecular mapping/QTL analysis, and for comparative genome analysis of the two Corchorus species. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Effect of enzyme supplementation on the metabolisable energy content of solvent-extracted rapeseed and sunflower seed meals for chicken, guinea fowl and quail

(1) The nitrogen-corrected apparent metabolisable energy (AME(N)) content of solvent-extracted rapeseed and sunflower seed (un-decorticated) meals in relation to species (chicken, guinea fowl and quail) and dietary addition of feed enzymes (0 or 0.5 g/kg diet) was evaluated by a diet replacement method in a 3 x 2 factorial design. (2) The metabolism trial was conducted at two substitution levels (200 and 400 g/kg diet) of each meal with or without supplementation of commercial enzyme preparation in 6 individuals or 6 groups of cockerels, guinea fowls and quails. (3) The experimental diets were fed for a period of 12 d followed by a 3-d collection period during which total feed consumed and droppings output were quantitatively recorded. (4) The AME(N) values of rapeseed meal for cockerels, guinea fowls and quails were 8.4, 8.7 and 8.8 MJ/kg, respectively, while the corresponding values for sunflower seed meal were 6.1, 6.1 and 6.2 MJ/kg dry matter, without enzyme supplementation. (5) The AME(N) value of rapeseed meal did not improve with enzyme supplementation. However, AME(N) values of sunflower seed meal significantly increased with enzyme supplementation, from 6.1 to 6.5 MJ/kg dry matter. (6) Since AME(N) values of rapeseed meal and sunflower seed meal were similar in chicken, guinea fowl and quail, values reported for chicken could, therefore, be used for guinea fowl and Japanese quail.     

Influence of rice varieties,nitrogen management and planting methods on methane emission and water productivity

A field experiment was conducted during rainy seasons of 2009 and 2010 at New Delhi, India to study the influence of varieties and integrated nitrogen management (INM) on methane (CH₄) emission and water productivity under flooded transplanted (FT) and aerobic rice (AR) cultivation. The treatments included two rice (‘PB 1’ and ‘PB 1121’) varieties and eight INM practices including N control, recommended dose of N through urea, different combinations of urea with farmyard manure (FYM), green manure (GM), biofertilizer (BF) and vermicompost (VC). The results showed 91.6–92.5 % lower cumulative CH₄ emission in AR compared to FT rice. In aerobic conditions, highest cumulative CH₄ emission (6.9–7.0 kg ha^?1) was recorded with the application of 100 % N by organic sources (FYM+GM+BF+VC). Global warming potential (GWP) was significantly lower in aerobic rice (105.0–107.5 kg CO₂ ha^?1) compared to FT rice (1242.5–1447.5 kg CO₂ ha^?1). Significantly higher amount of water was used in FT rice than aerobic rice by both the rice varieties, and a water saving between 59.5 and 63 % were recorded. Under aerobic conditions, both rice varieties had a water productivity of 8.50–14.69 kg ha^?1, whereas in FT rice, it was 3.81–6.00 kg ha^?1. In FT rice, a quantity of 1529.2–1725.2 mm water and in aerobic rice 929.2–1225.2 mm water was used to produce one kg rice. Thus, there was a saving of 28.4–39.6 % total water in both the rice varieties under AR cultivation.     

Mycoparasitic Trichoderma viride as a biocontrol agent against Fusarium oxysporum f. sp. adzuki and Pythium arrhenomanes and as a growth promoter of soybean

Trichoderma viride was proved as an effective biocontrol agent against two fungal pathogens, Fusarium oxysporum f. sp. adzuki and Pythium arrhenomanes, infecting soybean. During an in vitro biocontrol test, Trichoderma showed mycoparasitism and destructive control against the tested fungal pathogens. Both the pathogens significantly influence the germination and P. arrhenomanes had a severe effect (only 5% germination). The root system of the soybean plant was poorly developed due to the infection and it exerted a negative influence on the nodulation and further growth phases of the plant. During pot assay along with biocontrol activity, Trichoderma showed growth promoting action on the soybean plant. Trichoderma enhanced growth of shoot and root systems and fruit yield after 12 weeks of growth. Pythium and Fusarium infected plants treated with Trichoderma had ∼194% and 141% more height than pathogens alone. The fruit yield treated with Trichoderma was ∼66 per plant whereas the yield was only 41 for a control plant. The plants infected with Pythium and Fusarium and treated with Trichoderma had fruit yields of 43 and 53 respectively and those were 5 and 1.6 times higher than plants infected with pathogens.     

The influence of soil and other physical factors on the antifungal activity of carbendazim against Rhizoctonia solani

The inhibition of the growth of Rhizoctohia solani in vitro by carbendazim was maximal at 20°C and at pH 8. In pot tests using mung bean, maximum protection against ‘damping-off’, caused by R. solani, was obtained when seeds were treated with carbendazim. at 1 g a. i. kg^?1 (as a wettable powder) and sown in river sands of pH 7 and 8, kept at a 20°C. Better disease control was obtained in soils kept moist by frequent watering than in soils under water stress. Disease control was best in sandy soil and least in clay loam. The implications of these results, for the antifungal efficacy of carbendazim under diverse soil conditions, are discussed.     

Development of a RAPD marker-based classification criterion for quality semen production in Holstein crossbred bulls

In cattle production systems, an intense selection pressure for production traits has resulted in the decline of fertility traits. To optimize an efficient reproduction system, the inclusion of both male and female fertility traits in the selection process is very much essential. RAPD (Random Amplified Polymorphic DNA) was developed as a molecular biology tool and has been extensively used, to study intra- and interspecific genetic diversity. The present study was undertaken to utilize RAPD primers to investigate the association between DNA markers and semen quality traits viz. Sperm concentration, total sperm count ejaculate and initial sperm motility and thereby to identify good/poor semen producers. DNA isolated from the blood samples of healthy bulls was subjected to RAPD-PCR. The multiple regression analysis followed by independent t test was carried out to identify suitable markers. Based on the results, only 12 bands were identified as marker suitable for any of the quality trait. This includes, OPA2 ~ 760, OPA2 ~ 700, OPA6 ~ 1,200, OPA9 ~ 400, OPA9 ~ 380, OPA12 ~ 970, OPA14 ~ 715, OPA14 ~ 605, OPA16 ~ 485, OPA17 ~ 860 and OPA18 ~ 480. Multiple regression analysis selected, OPA2 ~ 760 and OPA2 ~ 1,750 for sperm concentration and OPA2 ~ 760, OPA2 ~ 700, OPA9 ~ 620, OPA4 ~ 670 and OPA18 ~ 1,015 for total sperm count/ejaculate. But the t test revealed a significant association between OPA2 ~ 760 and total sperm count. Further, discriminant function analysis also identified this marker in the first step itself. The results of the present study can be exploited as a low-cost alternative strategy for identification of good /poor semen producers in crossbred bulls at an early age.     

Comparative apparent metabolisable energy values of high, medium and low tannin varieties of sorghum in cockerel, guinea fowl and quail

1. Nitrogen-corrected apparent metabolisable energy values (AMEN) of three varieties of sorghum (white-low tannin, brown-medium tannin and red-high tannin) were measured in three species of poultry (cockerel, guinea fowl and Japanese quail) by a practical diet replacement (total collection) method. 2. Each variety of sorghum was tested at two concentrations (200 and 400 g/kg of reference diet) in 6 replications with one cockerel or guinea fowl or two quails per replication. The duration of the trial included a 10 d preliminary feeding period (on conventional grower diet) followed by a 12 d adaptation period (on reference and test diets) and a 3 d balance period (with recording of feed intake and excreta output). 3. The calculated AMEN values of different sorghum varieties were: white--12.9, 12.8 and 12.7; brown--12.7, 12.3 and 12.6; and red--11.4, 11.1 and 11.6 MJ/kg for cockerels, guinea fowls and quails, respectively. The mean AMEN value of red sorghum (11.3 MJ/kg) was significantly lower than those of brown (12.5 MJ/kg) or white sorghum (12.8 MJ/kg). A negative correlation was observed between tannin concentration and AMEN. 4. There was no significant difference in the AMEN values of white, brown and red sorghum varieties to the different poultry species. AMEN values of sorghum for the cockerel could, therefore, be used in practical feed formulation for guinea fowl and quail.