Investigation and genetic mapping of a Glomerella leaf spot resistance locus in apple

Apple Glomerella leaf spot (GLS) is a severe fungal disease that damages apple leaves during the summer in China. Breeding new apple varieties that are resistant to the disease is considered the best way of controlling GLS. Fine mapping and tightly linked marker are critically essential for the preselection of resistant seedlings. In this study, a population of 207 F₁ individuals derived from a cross between ‘Golden Delicious’ and ‘Fuji’ was used to construct a fine simple sequence repeat (SSR)‐based genetic linkage map. The position of R_gls, a locus responsible for resistance to GLS, was identified on apple linkage group (LG) 15 using SSR markers CH05g05 and CH01d08, which was adapted from a published set of 300 SSR markers that were developed using the bulked segregant analysis (BSA) method. These two SSR markers flanked the gene, and its recombination rate was 8.7% and 23.2%, respectively. A total of 276 newly developed SSR markers around the target region and designed from the genome apple assembly contig of LG15 were screened. Only nine of these were determined to be linked to the R_gls locus. Thus, a total of 11 SSR markers were in linkage with R_gls, and mapped at distances ranging from 0.5 to 33.8 cM. The closest marker to the R_gls locus was S0405127, which showed a genetic distance of approximately 0.5 cM. The first mapping of the gene R_gls was constructed, and the locations of the 11 effective primers in the ‘Golden Delicious’ apple genome sequence were anchored. This result facilitates better understanding of the molecular mechanisms underlying the trait of resistance to GLS and could be used in improving the breeding efficiency of GLS‐resistant apple varieties.     

Improved genetic parameter estimations in zoysiagrass by implementing post hoc blocking

Randomized complete block (RCB) design is the most widely used experimental design in biological sciences. As number of treatments increases, the block size become larger and it looses the capacity to control the variance within block, which is its original purpose. A method known as post hoc blocking could be used in these cases to improve the genetic parameter estimation and thus obtain an unbiased assessment of the performance of a given treatment. In trufgrass breeding, as other breeding program, this is a common challenge. The goal of this study was to test the capacity of different post hoc blocking designs to improve the genetic parameter estimation of zoysiagrass (Zoysia spp.). We evaluated two post hoc blocking designs; row–column (R–C) and incomplete block (IB) designs on five genotype trials located in Florida. The results showed that post hoc R–C design had superior model fitting than both the original RCB and the post hoc IB designs when studied at the single measurement level and at the site level. The narrow-sense heritability (0.24–0.40) and the genotype-by-measurement correlation (0.57–0.99) did not change significantly when R–C was compared to the original RCB design. The ranking of the top performing genotypes changed considerably when comparing RCB to R–C design, but the degree depended on the location analyzed. We conclude that the change in the ranking of the top (potentially select individuals) is coming from the better control of intra-block environmental variation, and this could potentially have a significant impact on the breeding selection process.     

Heterosis and combining ability of seven maize germplasm populations

Understanding the combining ability and heterosis of available germplasm is a prerequisite for successful maize improvement and breeding. The objectives of this study were to analyze the combining ability and heterosis of seven representative maize germplasm populations, and further, to evaluate their potential utility in germplasm improvement. A total of 21 crosses were made among these seven populations in a complete diallel without reciprocals. The parental populations and 21 crosses were evaluated for days to silking (DS), ear height (EH), and grain yield (GY) in the Northeast and Yellow and Huai River maize growing areas in China in 2012. Csyn5, Csyn7, Cpop.11, and Cpop.12 had desirable general combining ability (GCA) effects for DS and EH in both the Northeast China mega-environment (NCM) and the Yellow and Huai River Regions of China mega-environment (YHCM). Cpop.11 possessed a favorable GCA effect for GY in the NCM, as did Csyn5, Cpop.17, and Cpop.18 in the YHCM. Csyn6 and Csyn7 exhibited tremendous yield-enhancing potential in both mega-environments. Additionally, six combinations including Csyn7 × Csyn6, Csyn5 × Csyn6, Cpop.11 × Cpop.18, Cpop.12 × Cpop.17, Csyn7 × Cpop.17, and Csyn5 × Csyn7 exhibited better specific combining ability effects for GY, yield performance, and mid-parent heterosis in the appropriate mega-environment. These results indicated that the seven populations would be very useful for the improvement of related agronomic traits, and the six candidate combinations possessed great potential for further improvement and utilization.     

Two reported cytotypes of the emergent orchid model species <Emphasis Type="Italic">Erycina pusilla</Emphasis> are two different species

Each species is characterized by a specific set of chromosomes, which is described as the chromosome portrait or karyotype. In general, such a karyotype is the same for all individuals in the population. An exception to that rule has recently been found in the orchid Erycina pusilla, which has been reported to have two cytotypes with chromosome numbers of 2n = 10 and 2n = 12. Here, we examined the karyotypes of the two cytotypes and found differences in arm ratios and heterochromatin patterns as well as in the presence of satellite chromosomes and in the number and location of rDNA and telomeric repeat sites. These differences are extensive and would have required multiple chromosome rearrangements to generate the differences between the two karyotypes. We also found that F1 hybrids between the parents with the two different chromosome numbers resulted in sterile offspring, in accordance with our previous findings. The combination of hybrid sterility and extensively rearranged chromosomes supports the hypothesis that these two reported cytotypes are, in fact, two different species.     

淮北地区氮肥群体最高生产力水稻钾素吸收利用特征

以淮北地区有代表性的34个中熟中粳品种为试材,设置7个氮肥水平(0、150.0、187.5、225.0、262.5、300.0、337.5 kg hm~(–2)),得出各品种的最高产量,将该最高产量定义为氮肥群体最高生产力。在此基础上,明确处于顶层水平(≥10.50 t hm~(–2))、高层水平(9.75~10.50 t hm~(–2))、中层水平(9.00~9.75 t hm~(–2))和底层水平(≤9.00 t hm~(–2))水稻品种的钾素积累、分配及转运特征。结果表明,4个生产力等级水稻品种地上部植株、茎鞘和叶片的含钾率在拔节期最高;抽穗期顶层水平品种的这3个参数高于其他3个等级的品种;穗部含钾率差异不显著。随着氮肥群体生产力等级的提高,钾素总积累量增多;拔节前底层水平钾素积累量最多,两年平均为120.56 kg hm~(–2),比例占50.56%,顶层水平为最少,两年平均为108.02 kg hm~(–2),比例占35.99%;拔节至抽穗期和抽穗至成熟期顶层水平钾素阶段积累量及比例显著高于其他3个等级。移栽至拔节期,钾素积累速率为中层底层高层顶层水平,拔节后则为顶层高层中层底层水平。叶片的钾素转运量及转运率明显高于茎鞘;顶层水平叶片的钾素转运量高于其他3个等级,高层水平叶片的转运率最高;穗部增加量随生产力等级的递增而变大;抽穗到成熟期,茎鞘、叶片对穗的钾素转运贡献率表现为底层最高,中层次之,顶层最低。4个等级水稻品种籽粒生产率和百千克籽粒吸钾量差异不显著;钾素偏生产力和钾收获指数均表现为顶层高层中层底层水平。总之,氮肥群体最高生产力越高,水稻中后期植株钾素积累量及器官对钾素的吸收利用效率越显著。抽穗后保持较高的钾素吸收利用及转运效率是高产水稻品种的重要特征。     

马铃薯品种遗传多样性分析

为解析一套(559份)从世界各国收集的马铃薯种质资源的遗传多样性,用16个表型性状和36个SSR标记进行了聚类和多样性参数分析。对454份表型数据完整材料的UPGMA聚类分析表明,在欧氏距离14.66处被聚成2个类群(A_1和A),其中A_1在欧氏距离12.74处被分为A_(11)和A_(12)亚群;454份材料在欧氏距离11.73处被划成9个类群,包括4个小类(A、B、C和H)和5个大类(D、E、F、G和I),其中类群I所包括的材料占总数的57.5%,该结果较好地揭示了马铃薯种质材料之间的形态差异,区分生态类型不同和遗传差异明显的亲本。36个SSR标记在559份材料中共检测出134个多态性位点,每对引物检测1~7个等位变异,平均3.72个,引物多态性信息量(PIC)为0.1545~0.7743,平均为0.5783,说明品种间有丰富的遗传多样性。NJ系统进化树分析表明,559份材料可分为3个大群。类群I为一个混合群,各地区品种均有分布,包括133份马铃薯材料,占总数的23.8%;类群II中欧洲、北美及中国东北和西北地区的材料所占比重较大,数量为187,占33.5%;类群III中北美、南美以及中国东北和西南地区马铃薯材料所占比重较大,包含239份材料,占42.8%。表型性状聚类与SSR分子标记聚类结果相似,均与地理位置有很大相关性,应结合共同用于评价马铃薯品种遗传多样性。     

水稻颖花持续开放突变体sostenuto floret opening(sfo1)的鉴定与基因定位

水稻颖花开放是其生殖发育一个关键生理过程,对受精和随后种子发育具有重要影响。本文报道了一个与水稻颖花开放相关的突变体,来源于籼稻保持系西农1B的EMS(ethyl methane sulfonate)诱变群体。该突变体表现为开颖后浆片失水萎缩过程缓慢,内外稃持续开裂不闭合,暂命名为水稻颖花持续开放sostenuto floret opening 1(sfo1)突变体。遗传分析表明sfo1性状受1对隐性单基因控制,利用群体分离分析法(bulked segregation analysis,BSA)将SFO1基因定位在第5染色体SSR标记RM1054和IN/DEL标记ZTQ51之间,物理距离113 kb,含注释基因15个。本研究结果为SFO1基因的图位克隆和功能研究奠定了基础。     

Effect of exogenous hydrogen sulfide on lipophagy in mouse primary hepatocytes

AIM: To evaluate the effect of exogenous hydrogen sulfide (H₂S) from GYY4137 on lipophagy in mouse primary hepatocytes. METHODS: The C57BL/6 mouse primary hepatocytes isolated and cultured by 2-step in situ perfusion method were divided into 4 groups: the cells in control group were incubated with normal medium; the cells in model group were incubated with 1.2 mmol/L oleic acid (OA) for 48 h; the cells in H₂S group or propargylglycine (PAG) group were incubated with 1.2 mmol/L OA for 48 h followed by serum-free phenol red-free RPMI-1640 medium which contained 1 mmol/L GYY4137 or 200 μmol/L PAG for 6 h. The cells were collected to conduct immunofluorescence staining of LC3 and photography under fluorescence microscope, phase-contrast microscope or transmission electron microscope. The protein expression of LC3-Ⅰ/Ⅱ in the hepatocytes was determined by Western blot. RESULTS: In contrast with the model group, the fluorescent particles of LC3, the protein expression of LC3, the number of autophagic lysosome and vacuoles in hepatocytes in H₂S group increased. CONCLUSION: In steatosis hepatocytes, exogenous H₂S promotes the lipophagy.     

菜用甘薯新品种薯绿1号的选育

薯绿1号(原名徐菜薯1号)是以台农71为母本,以广薯菜2号为父本,通过定向有性杂交选育而成的菜用甘薯专用新品种。株型半直立,分枝多,叶片心形,顶叶黄绿色,叶基色和茎色均为绿色。薯块纺锤形,白皮白肉。茎尖无茸毛,烫后颜色翠绿至绿色,无苦涩味,微甜,有滑腻感,食味好。高抗茎线虫病,抗蔓割病。在国家区域试验3个月时间内每667m2产量1800kg左右,如在保护地条件下可周年生产,每667m2产量在5000kg以上。适合江苏、山东、河南、浙江、四川、广东、福建、海南等适宜地区作叶菜种植。     

Effect of tetrandrine on radiosensitivity of nasopharyngeal carcinoma cells

AIM: To investigate the mechanism of the radiosensitizing effect of maximum non-cytotoxic doses of tetrandrine (Tet) on nasopharyngeal carcinoma cell lines CNE1 and CNE2.METHODS: The cells were treated with ma-ximum non-cytotoxic doses of Tet (for CNE1 cells at 1.5 μmol/L and for CNE2 cells at 1.8 μmol/L), irradiation at 4 Gy, or combination of irradiation and maximum non-cytotoxic doses of Tet. The cell cycle distribution was analyzed by flow cytometry. The protein levels of γ-H2AX, cleaved caspase-3, p-CDC25C, CDK1, p-CDK1, cyclin B1, ERK and p-ERK were determined by Western blot.RESULTS: The expression of γ-H2AX was increased in CNE1 cells and CNE2 cells after combined treatment with irradiation and maximum non-cytotoxic doses of Tet. The percentages of CNE1 cells and CNE2 cells at G₂/M phase in irradiation group were (18.09±0.42)% and (18.48±1.32)%, respectively, which were decreased to (15.88±1.04)% and (13.80±0.82)% in combined treatment group, respectively (P<0.05). Combined treatment enhanced the increase in the protein level of cleaved caspase-3 caused by irradiation. The protein levels of p-CDC25C and p-CDK1 were increased in a dose-dependent manner by Tet treatment (P<0.05), while the expression of CDK1 showed no difference among different doses of Tet treatments. The protein levels of p-CDC25C, p-CDK1 and CDK1 showed no difference after the treatment with maximum non-cytotoxic doses of Tet. The combined treatment with irradiation and the maximum non-cytotoxic doses of Tet decreased the protein levels of p-CDC25C and p-CDK1 (P<0.05), increased the expression of cyclin B1, and had no influence on the expression of CDK1 (P<0.05). The combined treatment resulted in an increase in the protein level of p-ERK1 (P<0.05).CONCLUSION: The maximum non-cytotoxic doses of Tet enhance the DNA damage and apoptosis in CNE1 cells and CNE2 cells caused by irradiation, and the mechanism might be associated with ending of G₂/M arrest via activation of ERK/CDC25C/CDK1/cyclin B1 pathways.