Development of an algorithm identifying maximally diverse core collections

The development of a core collection, one which represents the genetic diversity of a crop with minimal redundancy and increases utility of the collection as a whole, is especially important as the funding for germplasm collections decreases. With limited resources, it is difficult to manage large germplasm collections and disperse genetically diverse germplasm to plant breeders. An algorithm was developed to assist in selection of core collections based on estimates of genetic distance. The criteria for selection of the maximum genetically diverse set were based on rankings of genetic distance between an accession with respect to all other accessions. Depending on the size core which a user wished, a zone around each selected accession was determined and no other accession within these limits was selected. The premise for the algorithm was that the genetic variability represented in the core must be representative of the distribution of genetic distances within the population of interest. In the present study, the algorithm was used with RAPD-marker-based estimates of genetic distance for 270 Theobroma cacao L. accessions and 134 Capsicum accessions that chose a set representing 18.5% of the population and representing the breadth of RAPD-based variation.     

Statistical analysis of interactive cytotoxicity in human epidermal keratinocytes following exposure to a mixture of four metals

Exposure to mixtures of chemicals is an important and relevant environmental issue. Of particular interest is the detection and characterization of departure of biological effects from additivity. Methodology based on the assumption of additivity is used in fitting single-chemicaldata. Interactionsare determined and characterized by making comparisons between the observed and predicted responses at mixtures along a fixed ratio ray of the component substances. Two simultaneous tests are developed for testing for any departure from additivity. Multiple comparisons procedures are used to compare observed responses to that predicted under additivity. A simultaneous confidence band on the predicted responses along the mixture ray is also developed. The methods are illustrated with cytotoxicity data that arise when human epidermal keratinocytes are exposed to a mixture of arsenic, chromium, cadmium, and lead. Synergistic, antagonistic, and additive cytotoxicities were observed at different dose levels of the four-metal mixture.     

Feed or food responsible for the presence of low-level thiouracil in urine of livestock and humans?

In recent years, questions have been raised on the possible semi-endogenous status of the alleged xenobiotic thyreostatic drug thiouracil; thiouracil has been detected in the urine of various animals (livestock and domesticated) at concentrations between 1 and 10 μg L(-1) and also in human urine. Although several studies suggest Brassicaceae-derived feed as potential origin, no traces of thiouracil have been detected in feed so far. Therefore, the aim of this study was to elucidate the origin of thiouracil in the urine of livestock and humans. To this purpose various Brassicaceae feed and food sources (e.g., rapeseed, rapeseed coarse meal, cabbage, cauliflower, broccoli) were investigated for the presence of thiouracil. In addition, the impact of the Brassicaceae-related β-thioglucosidase enzyme was evaluated. This myrosinase enzyme appeared to be crucial, because without its catalyzed hydrolysis no thiouracil could be detected in the various Brassicaceae-derived samples. Therefore, a sample pretreatment with incorporated enzymatic hydrolysis was developed after ensuring the quality performance of the extracted myrosinase mixture with a single-point glucose assay. Upon enzymatic hydrolysis and LC-MS(2) analysis, thiouracil was successfully detected in samples of traditional rapeseed, rapeseed-'00' variety coarse meal (values of erucic acid <2% and glucosinolates <25 μmol g(-1)), and rapeseed cake at 1.5, 1.6, and 0.4 μg kg(-1), respectively. As for the food samples, broccoli and cauliflower displayed thiouracil concentrations of 6.0 and <1.0 μg kg(-1), respectively. To the best of the authors' knowledge this study is the first to report the presence of naturally occurring thiouracil in feed and food samples. Future research should investigate the pathway of thiouracil formation and identify its possible precursors.     

Nursery Crop Growth Response to Municipal Biosolids: Species Salt and Xeric Adaptation a Key Factor?

ABSTRACT

Growth responses of potted ornamental crops to municipal biosolids in the semiarid southwestern USA are not adequately known. In 10- to 11-wk greenhouse pot studies, we evaluated the effects of dried biosolids-amended growing media on four ornamental crop species: Garden chrysanthemum (Dendranthema Xgrandiflorum ‘Megan’), butterfly bush (Buddleia davidii ‘Nanho Blue’), Japanese honeysuckle (Lonicera japonica ‘Purpurea’), and blanket flower (Gaillardia Xgrandiflora ‘Goblin’). The biosolids were composted without bulking agents (100% sewage sludge) and incorporated into growing media at rates ranging from 0 to 593 kg m^?3, or 0 to 72% by volume. Biosolids increased substrate pH from 5.8 to 7.2 and electrical conductivity (EC) from 2.6 to 47.3 dS m^?1. Any addition of biosolids (≥30 kg m^?3) reduced total plant dry matter (DM) of chrysanthemum. Conversely, shoot DM of blanket flower and butterfly bush increased by four- to five-fold at biosolids rates of 59 to 148 kg m^?3 (7 to 18% by volume) with corresponding increases in shoot N and P concentrations. Biosolids rates higher than 148 kg m^?3 reduced top growth of the latter two species and of Japanese honeysuckle. For all species, growth reductions with excessive biosolids rates likely resulted from osmotic stress and specific NH₄ toxicity. However, based on the substantial growth stimulations at moderate biosolids rates, xeric and salt-adapted species, such as blanket flower and butterfly bush, may be ideally suited for expanding the use of highly saline biosolids at semiarid nursery production sites.     

Testing fertilizer, gypsum, planting season and varieties of wild leek (Allium tricoccum) in forest farming system

Wild leek (Allium tricoccum) is an edible spring ephemeral of the eastern deciduous forests of North America that takes advantage of the short period of high light conditions between snowmelt and canopy closure to accumulate the carbon required to complete its annual growth and seed production. In Québec (Canada), this slow-growing species has been subjected to great harvesting pressure, which forced the provincial government to ban commercial harvest and sales in 1995. An illegal market has since developed and the plant is still under threat. Conservation of existing natural populations might be possible through commercial production of wild leek. To investigate this possibility, we set up plots in four sugar maple forest stands where different organic fertilizer and gypsum (0 or 3,000 kg ha^?1) applications were tested, together with two wild leek varieties, and bulb planting season. The two varieties, tricoccum and burdickii, despite morphological differences, are both suitable for cultivation. Planting bulbs in the spring seems more advantageous than in autumn, but these results will need to be confirmed. Fertilized plants exhibited better growth the year following transplantation than did non-fertilized plants. Belowground:aboveground biomass ratios indicated that plants receiving more fertilizer produced larger bulbs, but leaf size did not differ statistically. According to leaf nutrient analysis, fertilizers would need to be applied each year, whereas gypsum (as a calcium source) can be applied less frequently. Our results indicated a high potential for wild leek as a forest crop, at least when the bulbs are planted.     

Larval performances and life cycle completion of the Siberian moth, <Emphasis Type="Italic">Dendrolimus sibiricus</Emphasis> (Lepidoptera: Lasiocampidae), on potential host plants in Europe: a laboratory study on potted trees

The Siberian moth, Dendrolimus sibiricus, Tschtv. is the most harmful defoliator of coniferous forests in North Asia. The pest has already spread over the Urals and continues moving westwards. Recently, it has been recommended for quarantine in member countries by European and Mediterranean Plant Protection Organization (EPPO). The performances of the pest on coniferous species planted in Europe were assessed on a range of potted trees corresponding to the spectrum of economically important conifers in the EU: European larch Larix decidua, Norway spruce Picea abies, Scots pine Pinus sylvestris, European black pine Pinus nigra, and the North American species: Douglas fir Pseudotsuga menziesii and grand fir Abies grandis. Larvae showed a potential to survive and complete the development on all these host tree species. Favorable hosts were grand fir, European larch, and Douglas fir that allowed higher survival, better larval development, and as a result, yielded heavier pupae and adult moths with higher longevity. Black pine was a poor host but, however, could still support larval and pupal development. Norway spruce and Scots pine had an intermediate behavior. If accidentally introduced to Europe, the Siberian moth may become especially damaging in forest stands predominated by European larch and by the North American firs. Norway spruce and especially the two-needle pines will be less prone to intensive defoliation by this species. The fact that the pest may damage the range of economically important coniferous species should be taken into account in the pest risk assessment for Europe and also for North America where the Siberian moth occurrence is considered likely.     

Medicinal understory herbaceous species cultivated under different light and soil conditions in maple forests in southern Québec,Canada

Many northern hardwood understory plants have medicinal properties but their cost of production under conventional cultivation practices is fairly high. Therefore wild harvesting continues putting the natural populations at risk. Their cultivation in a forest farming system seems a promising alternative. This study was aimed at assessing the impact of canopy opening and soil fertility on growth and active component production of four medicinal plants: black cohosh (Actaea racemosa), wild ginger (Asarum canadense), blue cohosh (Caulophyllum thalictroides) and bloodroot (Sanguinaria canadensis). Rhizome sections were planted in two sugar maple forests. Mortality and total leaf area were monitored during 3 years, while subplots were harvested at the end of the second year for biomass and active component analyses. Multiple regressions indicated that all species responded more to acidity related elements (pH, Al, Al + H, Fe, Zn) than to soil fertility (Ca, K, Mg, P, C/N, base saturation and cation exchange capacity). This suggests that adjusting the pH by liming could be appropriate. Growth increased with irradiance, except for blue cohosh, indicating that forest openings could also be part of an appropriate forest management plan for their cultivation. While active component concentrations of rhizomes and roots increased in conditions that negatively affected growth, such as low pH, soil fertility or light availability, their total active component content exhibited responses that were similar to those of the growth variables. Thus, it seems that soil and light conditions that favour the growth of these medicinal plants also favour their total yield in active components.     

Does the matrix matter? A forest primate in a complex agricultural landscape

Many threatened primates now exist in fragmented forest habitats. The survival of these populations may depend on their ability to utilise agricultural or other matrix habitats between forest fragments, but this is poorly known. Here, we systematically investigate an arboreal primate’s use of a heterogeneous matrix in a fragmented forest landscape: the Angola black-and-white colobus (Colobus angolensis palliatus) in southern Kenya. We used a novel technique, based on semi-structured interviews with local informants, to address the difficulty of sampling relatively rare but important events, such as dispersal between fragments. We found that colobus frequently travelled and foraged in indigenous matrix vegetation (such as mangrove, wooded shrubland and shrubland) up to 4 km from the nearest forest fragments. Agricultural habitats, such as perennial plantation (coconut, mango and cashew nut) were also used by colobus for travelling and foraging (in remnant indigenous trees). The probability of sighting colobus in the matrix increased with the proportion of both tall (>6 m) vegetation cover and food tree cover, but declined with distance from forest habitat. Our findings suggest that certain matrix habitats are important for C. a. palliatus, and that future primate conservation initiatives might benefit from adopting a ‘landscape-level’ approach to habitat management, particularly in fragmented forest systems.     

Effect of nitrogen fertilization on nitrogen dynamics in oilseed rape using 15N‐labeling field experiment

In order to optimize nitrogen (N) fertilization and to reduce the environmental impact of oilseed rape without decreasing yield, a clearer understanding of N dynamics inside the plant is crucial. The present investigation therefore aimed to study the effects of different N‐application rates on the dynamics of N uptake, partitioning, and remobilization. The experiment was conducted on winter oilseed rape (Brassica napus L. cv. Capitol) under three levels of N input (0, 100, and 200 kg N ha^–1) from stem elongation to maturity using ¹⁵N‐labeling technique to distinguish between N uptake and N retranslocation in the plant. Nitrogen fertilization affected the time‐course of N uptake and also the allocation of N taken up from flowering to maturity. Most pod N came from N remobilization, and leaves accounted for the largest source of remobilized N regardless the N‐application rate. However, the contribution of leaves to the remobilized N pool increased with the N dose whereas the one of taproot decreased. Stems were the main sink for remobilized N from stem elongation to flowering. Leaves remained longer on N200 than on N0 and N100 plants, and N concentration in fallen leaves increased with the N treatment and in N100 plants along an axial gradient from the basal to the upper leaves. Overall, these results show that the timing of N supply is more crucial than the N amount to attain a high N efficiency.     

Effects of long-term contrasting lime and phosphorus applications on barley grain yield,root growth and abundance of mycorrhiza

Lime and phosphorus (P) applications are common agricultural management practices. Our aim was to quantify the effects of long-term application practices on root growth and abundance of arbuscular mycorrhizal fungi (AMF) under field conditions. We assessed the effects of lime and P fertilizer applications on barley yield, root growth and AMF abundance in 2016. Treatments were no, low, medium and high liming rate corresponding to application of 0, 4, 8 and 12 Mg lime ha⁻¹ every 5–9 years since 1942 combined with no or yearly application of 15.6 kg P ha⁻¹ since 1944. At harvest, grain yield, root intensity (core-break) and AMF abundance at different soil depths were estimated. Root development was monitored during early growth with minirhizotrons in treatments receiving low, medium and high liming rates and P fertilization. A quadratic model relating grain yield to liming rate estimated yields to peak at 6.4 Mg lime ha⁻¹ with yields of 4.2 and 3.2 Mg grain ha⁻¹ with and without P fertilization, respectively. Low and medium liming rates resulted in greater AMF abundance, especially in the no P treatments. During early growth in P-fertilized treatments, 77% and 65% more roots developed in the soil profile when treated with medium and high liming rate, respectively, compared to low liming rate. We conclude that long-term application of lime in soils receiving yearly P fertilization improved conditions for root growth in soil layers below 30 cm, but at the high liming rate, this did not translate into higher yield.