Twenty-five essential research questions to inform the protection and restoration of freshwater biodiversity

1. Freshwater biodiversity is declining at an unprecedented rate. Freshwater conservationists and environmental managers have enough evidence to demonstrate that action must not be delayed but have insufficient evidence to identify those actions that will be most effective in reversing the current trend.
2. Here, the focus is on identifying essential research topics that, if addressed, will contribute directly to restoring freshwater biodiversity through supporting ‘bending the curve’ actions (i.e. those actions leading to the recovery of freshwater biodiversity, not simply deceleration of the current downward trend).
3. The global freshwater research and management community was asked to identify unanswered research questions that could address knowledge gaps and barriers associated with ‘bending the curve’ actions. The resulting list was refined into six themes and 25 questions.
4. Although context-dependent and potentially limited in global reach, six overarching themes were identified: (i) learning from successes and failures; (ii) improving current practices; (iii) balancing resource needs; (iv) rethinking built environments; (v) reforming policy and investments; and (vi) enabling transformative change.
5. Bold, efficient, science-based actions are necessary to reverse biodiversity loss. We believe that conservation actions will be most effective when supported by sound evidence, and that research and action must complement one another. These questions are intended to guide global freshwater researchers and conservation practitioners, identify key projects and signal research needs to funders and governments. Our questions can act as springboards for multidisciplinary and multisectoral collaborations that will improve the management and restoration of freshwater biodiversity.

     

Freshwater turtle bycatch research supports science‐based fisheries management

1. Although it is sometimes difficult for researchers to ensure that their work is used by resource managers to make informed decisions, an example where this knowledge–action gap has been breached is in research published in Aquatic Conservation: Marine and Freshwater Ecosystems (AQC) – among other journals – that has assisted fisheries managers in identifying strategies for reducing freshwater turtle bycatch in commercial hoop net fisheries in Ontario, Canada.
2. Research published in AQC has provided evidence towards a simple and effective method for preventing turtle bycatch mortality in hoop nets, which could be adopted by the fishers. Other research published in AQC evaluated the effect of bycatch mortality on the probability of persistence of turtle populations with population viability analyses, and outlined the need to minimize bycatch mortality to prevent local extirpation. Nine other papers have been published on freshwater turtle bycatch in Ontario, furthering our knowledge on this issue including seasonality and temperature effects on catches, other net modifications, post‐release effects and assisted recovery, and the perspectives of fishers.
3. The research results were presented to local resource managers with further discussions involving industry and stakeholders to minimize turtle bycatch mortality. Over several years, researchers have provided information to resource managers; however, when an incident of high turtle mortality caught the public eye, the research was readily available and changes in regulations were quick to occur.
4. Reasonably good communication among researchers, resource managers, industry, stakeholders, and the broader public allowed the rapid implementation of regulations to mitigate freshwater turtle bycatch mortality and bridged the knowledge–action gap between researchers and resource managers.
5. Both articles published in AQC had practical conservation impacts and were influential in providing local resource managers with feasible solutions, and the impetus to change regulations. These impacts extended to other jurisdictions and their monitoring programmes, where methods to reduce turtle bycatch mortality were also implemented.

     

Sea lice infestation rates on wild and escaped farmed Atlantic salmon (Salmo salar L.) entering the Magaguadavic River, New Brunswick

A monitoring program for the prevalence and intensity of sea lice infestations of wild and escaped farmed salmon has been underway on the Magaguadavic River since 1992. Fish are screened in a fish ladder trap located in freshwater a short distance above the head of tide. No trends with time were evident in observed sea lice burdens, and in all years the majority of salmon, both wild and escapees, had no or low levels of infestation with sea lice. In the spring of 2002, 23 landlocked salmon moving to sea from the Magaguadavic River were acoustically tagged. Two fish returned to the river after a brief period of residence in Passamaquoddy Bay, with significant dermal damage from sea lice. These fish were tracked to areas close to commercial salmon farms.     

Molecular relationships between Australian annual wild rice,Oryza meridionalis,and two related perennial forms

Background

The perennial, Oryza rufipogon distributed from Asia to Australia and the annual O. meridionalis indigenous to Australia are AA genome species in the Oryza. However, recent research has demonstrated that the Australian AA genome perennial populations have maternal genomes more closely related to those of O. meridionalis than to those found in Asian populations of O. rufipogon suggesting that the Australian perennials may represent a new distinct gene pool for rice.

Results

Analysis of an Oryza core collection covering AA genome species from Asia to Oceania revealed that some Oceania perennials had organellar genomes closely related to that of O meridionalis (meridionalis-type). O. rufipogon accessions from New Guinea carried either the meridionalis-type or rufirpogon-type (like O. rufipogon) organellar genomes. Australian perennials carried only the meridionalis-type organellar genomes when accompanied by the rufipogon-type nuclear genome. New accessions were collected to better characterize the Australian perennials, and their life histories (annual or perennial) were confirmed by field observations. All of the material collected carried only meridionalis-type organellar genomes. However, there were two distinct perennial groups. One of them carried an rufipogon-type nuclear genome similar to the Australian O. rufipogon in the core collection and the other carried an meridionalis-type nuclear genome not represented in the existing collection. Morphologically the rufipogon-type shared similarity with Asian O. rufipogon. The meridionalis-type showed some similarities to O. meridionalis such as the short anthers usually characteristic of annual populations. However, the meridionalis-type perennial was readily distinguished from O. meridionalis by the presence of a larger lemma and higher number of spikelets.

Conclusion

Analysis of current accessions clearly indicated that there are two distinct types of Australian perennials. Both of them differed genetically from Asian O. rufipogon. One lineage is closely related to O. meridionalis and another to Asian O. rufipogon. The first was presumed to have evolved by divergence from O. meridionalis becoming differentiated as a perennial species in Australia indicating that it represents a new gene pool. The second, apparently derived from Asian O. rufipogon, possibly arrived in Australia later.     

The consequences of interactions between dispersal distance and resolution of habitat clustering for dispersal success

Habitat clustering results from processes of habitat loss and fragmentation, which operate at different resolutions and with different intensities, e.g. forest clear-cutting or thinning. Individual movements also vary at different spatial scales according to landscape structure and species dispersal strategies. Disentangling the relative impact of habitat loss and fragmentation on the long-term survival of species requires understanding how clustering at one resolution interacts with the amount of habitat, dispersal distance and clustering at other resolutions, to affect dispersal success. We addressed this problem by quantifying the magnitude of these interactions and how they were affected by the intensity of habitat removal. Individual-based simulations were conducted on artificial fractal landscapes where the intensity of habitat removal and the amount of clustering were varied independently at two nested resolutions, while the total amount of habitat in the landscape was controlled for. We show that the way the amount of habitat, the dispersal distance and the amount of clustering affect dispersal success depends on the resolution at which habitat clustering occurs, the intensity at which habitat is removed, and the strength of habitat selection. Our findings highlight: (a) the importance of explicitly considering scale-dependent biological responses to landscape change; and (b) the need to identify the appropriate scale at which to manage fragmentation, thus avoiding mismatches between the scale of ecological processes and the scale of management.     

How landscape ecology can promote the development of sustainable landscapes in Europe: the role of the European Association for Landscape Ecology (IALE-Europe) in the twenty-first century

In Europe, landscape research has a long tradition of drawing on several disciplines. ‘National schools’ of landscape research developed, which were related to the characteristic landscapes found in the different countries and to specific linguistic meanings and legal traditions when using landscape related concepts. International co-operation demands a certain harmonization of these concepts for better mutual understanding. The 2000 European Landscape Convention provided an important momentum to rethink research, policy and management of landscapes from the perspective of sustainable development and participatory planning. Landscape ecology as a transdisciplinary science with a dynamic and holistic perspective on landscape offers a great potential for an integrative approach. The specificity of the European landscape research rests on its long history and on integration based on the great diversity of the landscapes, characterised by an intimate relationship between the varied natural environment and the different cultural traditions which define the identity of countries, regions and people. Within a unified Europe, with increasing international and trans-border co-operation and increasing common environmental problems, the creation of a specific European Association for Landscape Ecology (IALE-Europe), in addition to the existing international association and its national chapters, became justified by the need for a collaborative endeavour to address the specific problems of landscapes in Europe and to stimulate co-operation between landscape ecologists in research, education and practice.     

Botulism in foals less than 6 months of age: 30 cases (1989-2002)

Botulism has been recognized as a clinical entity in foals since the 1960s. Also known as "Shaker foal" disease, the toxicoinfectious form of botulism affects foals, with the highest incidence in the United States seen in Kentucky and the mid-Atlantic region. The disease is characterized by progressive muscular weakness caused by the action of botulism neurotoxin at cholinergic neuromuscular junctions. Increased number of episodes and duration of recumbency, muscular trembling, and dysphagia are seen in affected foals. Left untreated, the disease can be rapidly fatal, with death occuring secondary to respiratory muscle paralysis within 24 to 72 hours of the onset of clinical signs. Very mildly affected foals can survive with minimal treatment Despite advances made in treatment of these foals, including administration of botulism antitoxin early in the course of the disease, there is still an impression that the disease carries a high mortality rate. The purpose of this study was to evaluate outcome in 30 foals <6 months of age diagnosed with botulism between 1989 and 2002 at the George D. Widener Large Animal Hospital, New Bolton Center. Two foals were euthanized for economic reasons early in the disease course, and I died while being treated. Survival of treated cases was greater than 96%. Approximately 50% of the cases required oxygen therapy, whereas 30% required mechanical ventilation. All foals, excepting 1 mildly affected foal, received botulism antitoxin. Mean duration of hospitalization was 14 days. With appropriate treatment, foals with botulism have a high survival rate.     

Seasonal changes in plasma concentrations of cecum-derived amines in clinically normal ponies and ponies predisposed to laminitis

OBJECTIVE: To measure concentrations of amines formed in the cecum of clinically normal ponies, determine amine concentrations in plasma samples collected in spring and winter, and compare concentrations of amines and serotonin in plasma samples obtained from clinically normal ponies and ponies predisposed to laminitis. SAMPLE POPULATION: Cecal contents obtained from 10 ponies euthanatized at an abattoir and blood samples obtained from 42 adult ponies. PROCEDURE: Cecal contents were assayed for amines by high-performance liquid chromatography (HPLC). Blood samples were collected at various times of the year from 20 ponies predisposed to acute laminitis and 22 clinically normal ponies. Plasma serotonin concentration was measured by HPLC, and tryptamine (TRP), tyramine (TYR), phenylethylamine (PEA), and isoamylamine (IAA) were measured by liquid chromatography-mass spectrometry. RESULTS: 15 amines were identified in cecal contents. Plasma TRP, TYR, PEA, and IAA concentrations ranged from 10pM to 100nM in both groups of ponies. Plasma concentrations of serotonin or other amines did not differ between clinically normal ponies and those predisposed to laminitis; however, significantly higher concentrations of TRP, PEA, and IAA were found in samples obtained in the spring, compared with winter samples. CONCLUSIONS AND CLINICAL RELEVANCE: Various amines are found in the cecum of ponies, several of which can be detected in the plasma. Concentrations increase significantly in the spring and may reach concentrations close to the threshold for causing vasoconstriction. Release of amines from the cecum into the systemic circulation may contribute to hemodynamic disturbances in horses and ponies with acute laminitis.