Effects of biochar on microbial community in bioflocs and gut of Oreochromis niloticus reared in a biofloc system

Aquaculture International - This study investigated the effects of biochar application on the bacterial community structure in bioflocs and intestines of Oreochromis niloticus cultured in a biofloc...     

Family by environment interactions in shell size of 43-day old silver-lip pearl oyster (Pinctada maxima), five families reared under different nursery conditions

To understand the influence the environment and associated genotype by environment interactions will exert on future silver-lip pearl oyster (Pinctada maxima) selective breeding programs, this study assessed the relative performance in four shell growth traits of spat from five full-sib families, when spat were communally reared at different salinities (29, 34 and 40 ppt), food availability (high, medium and low), food quality (high, medium and low), and in a hatchery vs. ocean environment for 43 days.Rearing environment was found to influence growth expression, with significant differences evident when oysters were grown at different salinities in the ocean instead of hatchery, or when fed algae of differing nutritional quality. As indicated by MANOVA, family comparative growth performances were also altered when the environment changed, with significant environment by family interactions apparent in the food quality, food availability and hatchery vs. ocean rearing treatments. Changes in salinity, however, did not affect relevant family performances.These results indicate that growth and relative family performance in P. maxima may change dependent on local environmental conditions and that genotype by environment effects may need to be considered in breeding programs for this species.     

Randomly primed,strand-switching,MinION-based sequencing for the detection and characterization of cultured RNA viruses

RNA viruses rapidly mutate, which can result in increased virulence, increased escape from vaccine protection, and false-negative detection results. Targeted detection methods have a limited ability to detect unknown viruses and often provide insufficient data to detect coinfections or identify antigenic variants. Random, deep sequencing is a method that can more fully detect and characterize RNA viruses and is often coupled with molecular techniques or culture methods for viral enrichment. We tested viral culture coupled with third-generation sequencing for the ability to detect and characterize RNA viruses. Cultures of bovine viral diarrhea virus, canine distemper virus (CDV), epizootic hemorrhagic disease virus, infectious bronchitis virus, 2 influenza A viruses, and porcine respiratory and reproductive syndrome virus were sequenced on the MinION platform using a random, reverse primer in a strand-switching reaction, coupled with PCR-based barcoding. Reads were taxonomically classified and used for reference-based sequence building using a stock personal computer. This method accurately detected and identified complete coding sequence genomes with a minimum of 20× coverage depth for all 7 viruses, including a sample containing 2 viruses. Each lineage-typing region had at least 26× coverage depth for all viruses. Furthermore, analyzing the CDV sample through a pipeline devoid of CDV reference sequences modeled the ability of this protocol to detect unknown viruses. Our results show the ability of this technique to detect and characterize dsRNA, negative- and positive-sense ssRNA, and nonsegmented and segmented RNA viruses.     

Sensitivity,specificity, and predictive values of reagent test strip estimations of blood urea nitrogen

Azostix-reagent-tests(R) strips (Ames, Miles, Inc., Diagnostic Division, Elkhart, IN) were used to measure blood urea nitrogen values in blood samples from 125 dogs and cats at the North Carolina State University, College of Veterinary Medicine. Results of the tests were compared with standard serum urea nitrogen results. Sensitivity, specificity, and negative predictive values were high (86.4, 90.3, and 96.5%, respectively). Positive predictive value was low, 65.5% of the dogs and cats with elevated blood urea nitrogen values were correctly classified as abnormal The test performs well when the prevalence of abnormal values is near 50%.     

Evidence for the Use of Low-Grade Weirs in Drainage Ditches to Improve Nutrient Reductions from Agriculture

Typical controlled drainage structures in drainage ditches provide drainage management strategies for isolated temporal periods. Innovative, low-grade weirs are anticipated to provide hydraulic control on an annual basis, as well as be installed at multiple sites within the drainage ditch for improved spatial biogeochemical transformations. This study provides evidence toward the capacity of low-grade weirs for nutrient reductions, when compared to the typical controlled drainage structure of a slotted riser treatment. Three ditches with weirs were compared against three ditches with slotted risers, and two control ditches for hydraulic residence time (HRT) and nutrient reductions. There were no differences in water volume or HRT between weired and riser systems. Nutrient concentrations significantly decreased from inflow to outflow in both controlled drainage strategies, but there were few statistical differences in N and P concentration reductions between controlled drainage treatments. Similarly, there were significant declines in N and P loads, but no statistical differences in median N and P outflow loads between weir (W) and riser (R) ditches for dissolved inorganic phosphate (W, 92%; R, 94%), total inorganic phosphate (W, 86%; R, 88%), nitrate-N (W, 98%; R, 96%), and ammonium (W, 67%; R, 85%) when nutrients were introduced as runoff events. These results indicate the importance of HRT in improving nutrient reductions. Low-grade weirs should operate as important drainage control structures in reducing nutrient loads to downstream receiving systems if the hydraulic residence time of the system is significantly increased with multiple weirs, as a result of ditch length and slope.